assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900086895.1_PFRJS18	NZ_LT576034	Propionibacterium freudenreichii isolate PFRJS18 chromosome I	1	1192272-1192369	1	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	GTGGGTCAGCCTGTTGGGCTGACC	24	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA,NA	NA|346aa|up_9|NZ_LT576034.1_1179338_1180376_+	cd01574, PBP1_LacI, ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators	NA|327aa|up_8|NZ_LT576034.1_1180619_1181600_+	cd06309, PBP1_galactofuranose_YtfQ-like, periplasmic binding domain of ABC-type galactofuranose YtfQ-like transport systems	NA|353aa|up_7|NZ_LT576034.1_1183266_1184325_+	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|343aa|up_6|NZ_LT576034.1_1184321_1185350_+	PRK11618, PRK11618, inner membrane ABC transporter permease protein YjfF; Provisional	NA|518aa|up_5|NZ_LT576034.1_1185644_1187198_+	PRK00074, guaA, GMP synthase; Reviewed	NA|296aa|up_4|NZ_LT576034.1_1187402_1188290_+	pfam09234, DUF1963, Domain of unknown function (DUF1963)	NA|314aa|up_3|NZ_LT576034.1_1188340_1189282_-	cd08243, quinone_oxidoreductase_like_1, Quinone oxidoreductase (QOR)	NA|112aa|up_2|NZ_LT576034.1_1189581_1189917_-	pfam04024, PspC, PspC domain	NA|398aa|up_1|NZ_LT576034.1_1190263_1191457_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|233aa|up_0|NZ_LT576034.1_1191453_1192152_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|84aa|down_0|NZ_LT576034.1_1192388_1192640_-	PRK10457, PRK10457, hypothetical protein; Provisional	NA|339aa|down_1|NZ_LT576034.1_1192928_1193945_+	COG4607, CeuA, ABC-type enterochelin transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|319aa|down_2|NZ_LT576034.1_1194016_1194973_+	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|347aa|down_3|NZ_LT576034.1_1195043_1196084_+	COG4605, CeuC, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|252aa|down_4|NZ_LT576034.1_1196080_1196836_+	COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]	NA|418aa|down_5|NZ_LT576034.1_1196908_1198162_-	COG1502, Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]	NA|830aa|down_6|NZ_LT576034.1_1198298_1200788_+	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|283aa|down_7|NZ_LT576034.1_1202133_1202982_+	PRK05647, purN, phosphoribosylglycinamide formyltransferase; Reviewed	NA|518aa|down_8|NZ_LT576034.1_1203103_1204657_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|287aa|down_9|NZ_LT576034.1_1204730_1205591_+	PRK14193, PRK14193, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
GCF_900086895.1_PFRJS18	NZ_LT576034	Propionibacterium freudenreichii isolate PFRJS18 chromosome I	2	2287465-2287571	2	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	GGCGCGGTCGATTTTCTGCCGGGTGATCTGCGGCGG	36	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|108aa|up_7|NZ_LT576034.1_2276174_2276498_+,NA|395aa|up_0|NZ_LT576034.1_2286168_2287353_-,NA|50aa|down_0|NZ_LT576034.1_2289909_2290059_-,NA|234aa|down_2|NZ_LT576034.1_2292123_2292825_+,NA|247aa|down_9|NZ_LT576034.1_2304698_2305439_-	NA|78aa|up_9|NZ_LT576034.1_2273216_2273450_+	cd00371, HMA, Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones	NA|656aa|up_8|NZ_LT576034.1_2273536_2275504_+	cd02079, P-type_ATPase_HM, P-type heavy metal-transporting ATPase	NA|108aa|up_7|NZ_LT576034.1_2276174_2276498_+	NA	NA|264aa|up_6|NZ_LT576034.1_2276563_2277355_+	pfam13683, rve_3, Integrase core domain	NA|318aa|up_5|NZ_LT576034.1_2277316_2278270_-	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|1023aa|up_4|NZ_LT576034.1_2278618_2281687_+	PRK10340, ebgA, cryptic beta-D-galactosidase subunit alpha; Reviewed	NA|463aa|up_3|NZ_LT576034.1_2281709_2283098_+	COG2211, MelB, Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]	NA|332aa|up_2|NZ_LT576034.1_2283143_2284139_+	cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs	NA|436aa|up_1|NZ_LT576034.1_2284381_2285689_+	pfam01610, DDE_Tnp_ISL3, Transposase	NA|395aa|up_0|NZ_LT576034.1_2286168_2287353_-	NA	NA|50aa|down_0|NZ_LT576034.1_2289909_2290059_-	NA	NA|436aa|down_1|NZ_LT576034.1_2290644_2291952_+	pfam01610, DDE_Tnp_ISL3, Transposase	NA|234aa|down_2|NZ_LT576034.1_2292123_2292825_+	NA	NA|241aa|down_3|NZ_LT576034.1_2293464_2294187_-	cd01026, TOPRIM_OLD, TOPRIM_OLD: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in bacterial and archaeal nucleases of the OLD (overcome lysogenization defect) family	NA|625aa|down_4|NZ_LT576034.1_2294345_2296220_+	PRK05667, dnaG, DNA primase; Validated	NA|473aa|down_5|NZ_LT576034.1_2296378_2297797_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|452aa|down_6|NZ_LT576034.1_2297946_2299302_+	PRK07251, PRK07251, FAD-containing oxidoreductase	NA|456aa|down_7|NZ_LT576034.1_2301332_2302700_+	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|481aa|down_8|NZ_LT576034.1_2303252_2304695_+	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family	NA|247aa|down_9|NZ_LT576034.1_2304698_2305439_-	NA
GCF_900086895.1_PFRJS18	NZ_LT576034	Propionibacterium freudenreichii isolate PFRJS18 chromosome I	3	2372694-2372805	3	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	GTGGTCACCTGTGCGGCGTCATTGCCGCACAACTGCCCAC	40	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|94aa|up_1|NZ_LT576034.1_2368429_2368711_+,NA|146aa|down_0|NZ_LT576034.1_2372955_2373393_-,NA|216aa|down_6|NZ_LT576034.1_2380520_2381168_+	NA|313aa|up_9|NZ_LT576034.1_2359108_2360047_+	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|818aa|up_8|NZ_LT576034.1_2360046_2362500_+	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]	NA|281aa|up_7|NZ_LT576034.1_2362822_2363665_-	cd19071, AKR_AKR1-5-like, AKR1/2/3/4/5 family of aldo-keto reductase (AKR) and similar proteins	NA|350aa|up_6|NZ_LT576034.1_2363769_2364819_-	COG2706, COG2706, 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]	NA|273aa|up_5|NZ_LT576034.1_2364905_2365724_+	PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed	NA|246aa|up_4|NZ_LT576034.1_2365804_2366542_-	cd08563, GDPD_TtGDE_like, Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins	NA|228aa|up_3|NZ_LT576034.1_2366538_2367222_-	PRK08219, PRK08219, SDR family oxidoreductase	NA|383aa|up_2|NZ_LT576034.1_2367354_2368503_+	pfam04892, VanZ, VanZ like family	NA|94aa|up_1|NZ_LT576034.1_2368429_2368711_+	NA	NA|870aa|up_0|NZ_LT576034.1_2369897_2372507_+	COG1316, LytR, Transcriptional regulator [Transcription]	NA|146aa|down_0|NZ_LT576034.1_2372955_2373393_-	NA	NA|324aa|down_1|NZ_LT576034.1_2373642_2374614_+	cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase	NA|475aa|down_2|NZ_LT576034.1_2374787_2376212_+	PRK05370, PRK05370, argininosuccinate synthase; Validated	NA|509aa|down_3|NZ_LT576034.1_2376866_2378393_-	COG1316, LytR, Transcriptional regulator [Transcription]	NA|249aa|down_4|NZ_LT576034.1_2378776_2379523_+	PRK00481, PRK00481, NAD-dependent deacetylase; Provisional	NA|166aa|down_5|NZ_LT576034.1_2379690_2380188_-	PRK00522, tpx, thiol peroxidase	NA|216aa|down_6|NZ_LT576034.1_2380520_2381168_+	NA	NA|374aa|down_7|NZ_LT576034.1_2381229_2382351_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|226aa|down_8|NZ_LT576034.1_2382515_2383193_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|465aa|down_9|NZ_LT576034.1_2383231_2384626_-	COG1236, YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
GCF_900086895.1_PFRJS18	NZ_LT576034	Propionibacterium freudenreichii isolate PFRJS18 chromosome I	4	2605621-2605732	4	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	ACCGGCCCCGAAAACGGACGCGTCGGCTCATCCGAGGGCA	40	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|291aa|up_8|NZ_LT576034.1_2593846_2594719_+,NA|313aa|up_7|NZ_LT576034.1_2594705_2595644_+,NA|342aa|up_4|NZ_LT576034.1_2598942_2599968_-,NA|79aa|up_2|NZ_LT576034.1_2601966_2602203_+,NA|202aa|down_1|NZ_LT576034.1_2608056_2608662_-	NA|513aa|up_9|NZ_LT576034.1_2592311_2593850_+	cd01406, SIR2-like, Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation	NA|291aa|up_8|NZ_LT576034.1_2593846_2594719_+	NA	NA|313aa|up_7|NZ_LT576034.1_2594705_2595644_+	NA	NA|460aa|up_6|NZ_LT576034.1_2595798_2597178_+	pfam03050, DDE_Tnp_IS66, Transposase IS66 family	NA|345aa|up_5|NZ_LT576034.1_2597620_2598655_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|342aa|up_4|NZ_LT576034.1_2598942_2599968_-	NA	NA|283aa|up_3|NZ_LT576034.1_2600650_2601499_-	pfam06772, LtrA, Bacterial low temperature requirement A protein (LtrA)	NA|79aa|up_2|NZ_LT576034.1_2601966_2602203_+	NA	NA|405aa|up_1|NZ_LT576034.1_2602303_2603518_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|285aa|up_0|NZ_LT576034.1_2603850_2604705_-	cd19071, AKR_AKR1-5-like, AKR1/2/3/4/5 family of aldo-keto reductase (AKR) and similar proteins	NA|594aa|down_0|NZ_LT576034.1_2606210_2607992_-	cd11332, AmyAc_OligoGlu_TS, Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), trehalose synthase (also called maltose alpha-D-glucosyltransferase), and related proteins	NA|202aa|down_1|NZ_LT576034.1_2608056_2608662_-	NA	NA|649aa|down_2|NZ_LT576034.1_2609174_2611121_+	TIGR03173, pbuX, xanthine permease	NA|334aa|down_3|NZ_LT576034.1_2611220_2612222_-	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|556aa|down_4|NZ_LT576034.1_2612699_2614367_+	cd17631, FACL_FadD13-like, fatty acyl-CoA synthetase, including FadD13	NA|483aa|down_5|NZ_LT576034.1_2614507_2615956_-	pfam00199, Catalase, Catalase	NA|306aa|down_6|NZ_LT576034.1_2616060_2616978_-	TIGR01413, Probable_deferrochelatase/peroxidase_EfeN, Dyp-type peroxidase family	NA|651aa|down_7|NZ_LT576034.1_2617509_2619462_+	cd05121, ABC1_ADCK3-like, Activator of bc1 complex (ABC1) kinases (also called aarF domain containing kinase 3) and similar proteins	NA|252aa|down_8|NZ_LT576034.1_2619928_2620684_-	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|419aa|down_9|NZ_LT576034.1_2620767_2622024_-	cd01033, ClC_like, Putative ClC chloride channel
