assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900094135.1_ASM90009413v1	NZ_LT604076	Streptococcus thermophilus strain ACA-DC 2 chromosome I	1	760733-760839	1	CRISPRCasFinder	no		cas3,DEDDh,cas9,cas1,cas2,csn2,DinG,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7	Orphan	CATATCATGCATATTGTCCATAT	23	1	1	760795-760816	NZ_LT604076.1_760840-760861	NA	2	2	Orphan	cas3,DEDDh,cas9,cas1,cas2,csn2,DinG,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7	NA,NA|133aa|down_6|NZ_LT604076.1_775554_775953_+	NA|257aa|up_9|NZ_LT604076.1_751687_752458_+	pfam06210, DUF1003, Protein of unknown function (DUF1003)	NA|297aa|up_8|NZ_LT604076.1_752438_753329_+	PRK05416, PRK05416, RNase adapter RapZ	NA|325aa|up_7|NZ_LT604076.1_753325_754300_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|304aa|up_6|NZ_LT604076.1_754296_755208_+	COG1481, COG1481, Uncharacterized protein conserved in bacteria [Function unknown]	NA|49aa|up_5|NZ_LT604076.1_755225_755372_+	pfam03577, Peptidase_C69, Peptidase family C69	NA|194aa|up_4|NZ_LT604076.1_755394_755976_+	pfam03577, Peptidase_C69, Peptidase family C69	NA|79aa|up_3|NZ_LT604076.1_755982_756219_+	pfam03577, Peptidase_C69, Peptidase family C69	NA|69aa|up_2|NZ_LT604076.1_756518_756725_+	pfam00313, CSD, 'Cold-shock' DNA-binding domain	NA|67aa|up_1|NZ_LT604076.1_757004_757205_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|392aa|up_0|NZ_LT604076.1_757537_758713_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|392aa|down_0|NZ_LT604076.1_761160_762336_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|304aa|down_1|NZ_LT604076.1_764182_765094_+	cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase	NA|395aa|down_2|NZ_LT604076.1_765115_766300_+	PRK07671, PRK07671, bifunctional cystathionine gamma-lyase/homocysteine desulfhydrase	NA|211aa|down_3|NZ_LT604076.1_769310_769943_-	pfam02384, N6_Mtase, N-6 DNA Methylase	NA|296aa|down_4|NZ_LT604076.1_770421_771309_+	COG4975, GlcU, Putative glucose uptake permease [Carbohydrate transport and metabolism]	NA|515aa|down_5|NZ_LT604076.1_773795_775340_+	cd01017, AdcA, Metal binding protein AdcA	NA|133aa|down_6|NZ_LT604076.1_775554_775953_+	NA	NA|336aa|down_7|NZ_LT604076.1_777897_778905_-	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|303aa|down_8|NZ_LT604076.1_780771_781680_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|603aa|down_9|NZ_LT604076.1_781887_783696_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase
GCF_900094135.1_ASM90009413v1	NZ_LT604076	Streptococcus thermophilus strain ACA-DC 2 chromosome I	2	849603-849704	2	CRISPRCasFinder	no	cas1,cas2,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7	cas3,DEDDh,cas9,cas1,cas2,csn2,DinG,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7	Type III-D,Type III-A,Type III-B,Type III-C	GATATAAACCTAATTACCTCGAGAGGGGAC	30	0	0	NA	NA	NA	1	1	TypeIII-D,TypeIII-A,TypeIII-B,TypeIII-C	cas3,DEDDh,cas9,cas1,cas2,csn2,DinG,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7	NA|124aa|up_9|NZ_LT604076.1_836242_836614_+,NA	NA|124aa|up_9|NZ_LT604076.1_836242_836614_+	NA	NA|255aa|up_8|NZ_LT604076.1_837040_837805_+	cd09007, NP-I_spr0068, uncharacterized subfamily of the nucleoside phosphorylase-I family	NA|212aa|up_7|NZ_LT604076.1_837866_838502_-	cd04302, HAD_5NT, haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to the Pseudomonas aeruginosa PA0065	NA|553aa|up_6|NZ_LT604076.1_841290_842949_-	pfam05833, FbpA, Fibronectin-binding protein A N-terminus (FbpA)	NA|392aa|up_5|NZ_LT604076.1_843260_844436_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|183aa|up_4|NZ_LT604076.1_845470_846019_+	cd03135, GATase1_DJ-1, Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1	NA|268aa|up_3|NZ_LT604076.1_846260_847064_+	PRK00054, PRK00054, dihydroorotate dehydrogenase electron transfer subunit; Reviewed	NA|316aa|up_2|NZ_LT604076.1_847082_848030_+	PRK07259, PRK07259, dihydroorotate dehydrogenase	cas1|335aa|up_1|NZ_LT604076.1_848168_849173_+	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	cas2|110aa|up_0|NZ_LT604076.1_849172_849502_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas6|244aa|down_0|NZ_LT604076.1_849842_850574_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas10|761aa|down_1|NZ_LT604076.1_850554_852837_+	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	csm2gr11|131aa|down_2|NZ_LT604076.1_852840_853233_+	pfam03750, Csm2_III-A, Csm2 Type III-A	csm3gr7|221aa|down_3|NZ_LT604076.1_853232_853895_+	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm4gr5|300aa|down_4|NZ_LT604076.1_853896_854796_+	pfam17953, Csm4_C, CRISPR Csm4 C-terminal domain	csm5gr7|358aa|down_5|NZ_LT604076.1_854798_855872_+	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	NA|232aa|down_6|NZ_LT604076.1_857399_858095_+	PRK00230, PRK00230, orotidine-5'-phosphate decarboxylase	NA|210aa|down_7|NZ_LT604076.1_858183_858813_+	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated	NA|484aa|down_8|NZ_LT604076.1_859509_860961_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|457aa|down_9|NZ_LT604076.1_866937_868308_-	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE
GCF_900094135.1_ASM90009413v1	NZ_LT604076	Streptococcus thermophilus strain ACA-DC 2 chromosome I	3	1486288-1486379	3	CRISPRCasFinder	no	cas3	cas3,DEDDh,cas9,cas1,cas2,csn2,DinG,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7	Unclear	CTTTTCTTTACGATATCAATTTTAACATCTTT	32	0	0	NA	NA	NA	1	1	Unclear	cas3,DEDDh,cas9,cas1,cas2,csn2,DinG,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7	NA|86aa|up_3|NZ_LT604076.1_1481906_1482164_-,NA|143aa|down_7|NZ_LT604076.1_1492281_1492710_-,NA|64aa|down_9|NZ_LT604076.1_1493892_1494084_-	cas3|673aa|up_9|NZ_LT604076.1_1473356_1475375_-	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|368aa|up_8|NZ_LT604076.1_1475503_1476607_-	PRK00053, alr, alanine racemase; Reviewed	NA|120aa|up_7|NZ_LT604076.1_1476627_1476987_-	PRK00070, acpS, 4'-phosphopantetheinyl transferase; Provisional	NA|344aa|up_6|NZ_LT604076.1_1476990_1478022_-	PRK09261, PRK09261, phospho-2-dehydro-3-deoxyheptonate aldolase; Validated	NA|344aa|up_5|NZ_LT604076.1_1478119_1479151_-	COG0722, AroG, 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]	NA|850aa|up_4|NZ_LT604076.1_1479174_1481724_-	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|86aa|up_3|NZ_LT604076.1_1481906_1482164_-	NA	NA|316aa|up_2|NZ_LT604076.1_1482250_1483198_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|298aa|up_1|NZ_LT604076.1_1483263_1484157_-	pfam00480, ROK, ROK family	NA|634aa|up_0|NZ_LT604076.1_1484341_1486243_-	TIGR01996, Includes:_Phosphotransferase_enzyme_IIB_component, PTS system, sucrose-specific IIBC component	NA|481aa|down_0|NZ_LT604076.1_1486491_1487934_+	TIGR01322, Sucrose-6-phosphate_hydrolase, sucrose-6-phosphate hydrolase	NA|322aa|down_1|NZ_LT604076.1_1487942_1488908_+	cd06291, PBP1_Qymf-like, ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs	NA|145aa|down_2|NZ_LT604076.1_1488997_1489432_-	PRK00202, nusB, transcription antitermination factor NusB	NA|130aa|down_3|NZ_LT604076.1_1489424_1489814_-	pfam03780, Asp23, Asp23 family, cell envelope-related function	NA|187aa|down_4|NZ_LT604076.1_1489884_1490445_-	PRK00529, PRK00529, elongation factor P; Validated	NA|152aa|down_5|NZ_LT604076.1_1490557_1491013_-	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|354aa|down_6|NZ_LT604076.1_1491031_1492093_-	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|143aa|down_7|NZ_LT604076.1_1492281_1492710_-	NA	NA|130aa|down_8|NZ_LT604076.1_1493315_1493705_-	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter	NA|64aa|down_9|NZ_LT604076.1_1493892_1494084_-	NA
