assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900097245.1_PFRJS25	NZ_LT618783	Propionibacterium freudenreichii isolate PFRJS25 chromosome I	1	218415-218579	1	CRISPRCasFinder	no		csa3,cas3,WYL,DinG,DEDDh,csb1gr7,csb2gr5,csb3,cas1,cas2	Orphan	GCCAAGAAGCCGGCAGCGAAGAAG	24	0	0	NA	NA	NA	3	3	Orphan	csa3,cas3,WYL,DinG,DEDDh,csb1gr7,csb2gr5,csb3,cas1,cas2	NA|81aa|up_8|NZ_LT618783.1_202693_202936_-,NA|482aa|down_0|NZ_LT618783.1_218646_220092_+	NA|111aa|up_9|NZ_LT618783.1_202265_202598_+	TIGR03816, tadE_like_DECH, helicase/secretion neighborhood TadE-like protein	NA|81aa|up_8|NZ_LT618783.1_202693_202936_-	NA	NA|289aa|up_7|NZ_LT618783.1_203047_203914_+	pfam02613, Nitrate_red_del, Nitrate reductase delta subunit	NA|404aa|up_6|NZ_LT618783.1_204129_205341_+	COG1145, NapF, Ferredoxin [Energy production and conversion]	NA|557aa|up_5|NZ_LT618783.1_205402_207073_+	cd02770, MopB_DmsA-EC, This CD (MopB_DmsA-EC) includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes	NA|436aa|up_4|NZ_LT618783.1_207055_208363_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|215aa|up_3|NZ_LT618783.1_209534_210179_+	TIGR02951, anaerobic_dimethyl_sulfoxide_reductase_subunit_B, DMSO reductase, iron-sulfur subunit	NA|335aa|up_2|NZ_LT618783.1_210178_211183_+	COG3302, DmsC, DMSO reductase anchor subunit [General function prediction only]	NA|821aa|up_1|NZ_LT618783.1_211179_213642_-	TIGR03817, DECH_helic, helicase/secretion neighborhood putative DEAH-box helicase	NA|506aa|up_0|NZ_LT618783.1_213891_215409_+	pfam05175, MTS, Methyltransferase small domain	NA|482aa|down_0|NZ_LT618783.1_218646_220092_+	NA	NA|213aa|down_1|NZ_LT618783.1_220088_220727_+	PRK00698, tmk, thymidylate kinase; Validated	NA|438aa|down_2|NZ_LT618783.1_221053_222367_+	PRK07940, PRK07940, DNA polymerase III subunit delta'; Validated	NA|560aa|down_3|NZ_LT618783.1_222514_224194_+	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|350aa|down_4|NZ_LT618783.1_224323_225373_+	COG1774, COG1774, Uncharacterized homolog of PSP1 [Function unknown]	NA|281aa|down_5|NZ_LT618783.1_225680_226523_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|505aa|down_6|NZ_LT618783.1_226522_228037_-	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]	NA|484aa|down_7|NZ_LT618783.1_228301_229753_+	PRK11049, PRK11049, D-alanine/D-serine/glycine permease; Provisional	NA|446aa|down_8|NZ_LT618783.1_229946_231284_+	pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase	NA|113aa|down_9|NZ_LT618783.1_232093_232432_-	COG0347, GlnK, Nitrogen regulatory protein PII [Amino acid transport and metabolism]
GCF_900097245.1_PFRJS25	NZ_LT618783	Propionibacterium freudenreichii isolate PFRJS25 chromosome I	2	2042081-2045018	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	csb1gr7,csb2gr5,cas3,csb3,cas1,cas2	csa3,cas3,WYL,DinG,DEDDh,csb1gr7,csb2gr5,csb3,cas1,cas2	Unclear	ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC,ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC,ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC	36,36,36	2	2	2042479-2042515|2042552-2042589	NZ_LT618784.1_19597-19561|NZ_LT618784.1_8924-8961	NA:NA:NA	40,40,40	40	Unclear	csa3,cas3,WYL,DinG,DEDDh,csb1gr7,csb2gr5,csb3,cas1,cas2	NA,NA|169aa|down_2|NZ_LT618783.1_2052120_2052627_+,NA|172aa|down_3|NZ_LT618783.1_2052661_2053177_-,NA|80aa|down_5|NZ_LT618783.1_2055757_2055997_-,NA|92aa|down_7|NZ_LT618783.1_2057296_2057572_+	NA|337aa|up_9|NZ_LT618783.1_2028982_2029993_-	COG2345, COG2345, Predicted transcriptional regulator [Transcription]	NA|96aa|up_8|NZ_LT618783.1_2029998_2030286_-	pfam10006, DUF2249, Uncharacterized conserved protein (DUF2249)	NA|334aa|up_7|NZ_LT618783.1_2030759_2031761_-	pfam13683, rve_3, Integrase core domain	NA|425aa|up_6|NZ_LT618783.1_2031858_2033133_-	PRK08639, PRK08639, threonine dehydratase; Validated	csb1gr7|400aa|up_5|NZ_LT618783.1_2033665_2034865_+	pfam09617, Cas_GSU0053, CRISPR-associated protein GSU0053 (Cas_GSU0053)	csb2gr5|514aa|up_4|NZ_LT618783.1_2034866_2036408_+	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system	cas3|871aa|up_3|NZ_LT618783.1_2036404_2039017_+	TIGR02621, CRISPR-associated_helicase_Cas3, CRISPR-associated helicase Cas3, subtype Dpsyc	csb3|333aa|up_2|NZ_LT618783.1_2039013_2040012_+	cd09764, Csb3_I-U, CRISPR/Cas system-associated RAMP superfamily protein Csb3	cas1|534aa|up_1|NZ_LT618783.1_2040001_2041603_+	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	cas2|101aa|up_0|NZ_LT618783.1_2041599_2041902_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|434aa|down_0|NZ_LT618783.1_2045045_2046347_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|436aa|down_1|NZ_LT618783.1_2049469_2050777_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|169aa|down_2|NZ_LT618783.1_2052120_2052627_+	NA	NA|172aa|down_3|NZ_LT618783.1_2052661_2053177_-	NA	NA|409aa|down_4|NZ_LT618783.1_2053347_2054574_-	PRK06849, PRK06849, hypothetical protein; Provisional	NA|80aa|down_5|NZ_LT618783.1_2055757_2055997_-	NA	NA|250aa|down_6|NZ_LT618783.1_2056089_2056839_-	pfam07510, DUF1524, Protein of unknown function (DUF1524)	NA|92aa|down_7|NZ_LT618783.1_2057296_2057572_+	NA	NA|439aa|down_8|NZ_LT618783.1_2057968_2059285_+	PRK12489, PRK12489, anaerobic C4-dicarboxylate transporter; Reviewed	NA|960aa|down_9|NZ_LT618783.1_2059805_2062685_+	cd09203, PLDc_N_DEXD_b1, N-terminal putative catalytic domain of uncharacterized prokaryotic and archeal HKD family nucleases fused to a DEAD/DEAH box helicase domain
GCF_900097245.1_PFRJS25	NZ_LT618783	Propionibacterium freudenreichii isolate PFRJS25 chromosome I	3	2046491-2046954	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	csb1gr7,csb2gr5,cas3,csb3,cas1,cas2	csa3,cas3,WYL,DinG,DEDDh,csb1gr7,csb2gr5,csb3,cas1,cas2	Unclear	ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC,ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC,ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC	36,36,36	0	0	NA	NA	NA:NA:NA	4,6,6	6	Unclear	csa3,cas3,WYL,DinG,DEDDh,csb1gr7,csb2gr5,csb3,cas1,cas2	NA,NA|169aa|down_1|NZ_LT618783.1_2052120_2052627_+,NA|172aa|down_2|NZ_LT618783.1_2052661_2053177_-,NA|80aa|down_4|NZ_LT618783.1_2055757_2055997_-,NA|92aa|down_6|NZ_LT618783.1_2057296_2057572_+,NA|100aa|down_9|NZ_LT618783.1_2062685_2062985_-	NA|96aa|up_9|NZ_LT618783.1_2029998_2030286_-	pfam10006, DUF2249, Uncharacterized conserved protein (DUF2249)	NA|334aa|up_8|NZ_LT618783.1_2030759_2031761_-	pfam13683, rve_3, Integrase core domain	NA|425aa|up_7|NZ_LT618783.1_2031858_2033133_-	PRK08639, PRK08639, threonine dehydratase; Validated	csb1gr7|400aa|up_6|NZ_LT618783.1_2033665_2034865_+	pfam09617, Cas_GSU0053, CRISPR-associated protein GSU0053 (Cas_GSU0053)	csb2gr5|514aa|up_5|NZ_LT618783.1_2034866_2036408_+	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system	cas3|871aa|up_4|NZ_LT618783.1_2036404_2039017_+	TIGR02621, CRISPR-associated_helicase_Cas3, CRISPR-associated helicase Cas3, subtype Dpsyc	csb3|333aa|up_3|NZ_LT618783.1_2039013_2040012_+	cd09764, Csb3_I-U, CRISPR/Cas system-associated RAMP superfamily protein Csb3	cas1|534aa|up_2|NZ_LT618783.1_2040001_2041603_+	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	cas2|101aa|up_1|NZ_LT618783.1_2041599_2041902_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|434aa|up_0|NZ_LT618783.1_2045045_2046347_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|436aa|down_0|NZ_LT618783.1_2049469_2050777_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|169aa|down_1|NZ_LT618783.1_2052120_2052627_+	NA	NA|172aa|down_2|NZ_LT618783.1_2052661_2053177_-	NA	NA|409aa|down_3|NZ_LT618783.1_2053347_2054574_-	PRK06849, PRK06849, hypothetical protein; Provisional	NA|80aa|down_4|NZ_LT618783.1_2055757_2055997_-	NA	NA|250aa|down_5|NZ_LT618783.1_2056089_2056839_-	pfam07510, DUF1524, Protein of unknown function (DUF1524)	NA|92aa|down_6|NZ_LT618783.1_2057296_2057572_+	NA	NA|439aa|down_7|NZ_LT618783.1_2057968_2059285_+	PRK12489, PRK12489, anaerobic C4-dicarboxylate transporter; Reviewed	NA|960aa|down_8|NZ_LT618783.1_2059805_2062685_+	cd09203, PLDc_N_DEXD_b1, N-terminal putative catalytic domain of uncharacterized prokaryotic and archeal HKD family nucleases fused to a DEAD/DEAH box helicase domain	NA|100aa|down_9|NZ_LT618783.1_2062685_2062985_-	NA
GCF_900097245.1_PFRJS25	NZ_LT618783	Propionibacterium freudenreichii isolate PFRJS25 chromosome I	4	2050901-2051519	3,4,3	PILER-CR,CRISPRCasFinder,CRT	no	csb1gr7,csb2gr5,cas3,csb3,cas1,cas2	csa3,cas3,WYL,DinG,DEDDh,csb1gr7,csb2gr5,csb3,cas1,cas2	Unclear	ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC,ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC,ATTGCCCCTCCTTCTGGGAGGGGCCCTTCATTGAGGC	36,36,37	0	0	NA	NA	NA:NA:NA	8,8,8	8	Unclear	csa3,cas3,WYL,DinG,DEDDh,csb1gr7,csb2gr5,csb3,cas1,cas2	NA,NA|169aa|down_0|NZ_LT618783.1_2052120_2052627_+,NA|172aa|down_1|NZ_LT618783.1_2052661_2053177_-,NA|80aa|down_3|NZ_LT618783.1_2055757_2055997_-,NA|92aa|down_5|NZ_LT618783.1_2057296_2057572_+,NA|100aa|down_8|NZ_LT618783.1_2062685_2062985_-	NA|334aa|up_9|NZ_LT618783.1_2030759_2031761_-	pfam13683, rve_3, Integrase core domain	NA|425aa|up_8|NZ_LT618783.1_2031858_2033133_-	PRK08639, PRK08639, threonine dehydratase; Validated	csb1gr7|400aa|up_7|NZ_LT618783.1_2033665_2034865_+	pfam09617, Cas_GSU0053, CRISPR-associated protein GSU0053 (Cas_GSU0053)	csb2gr5|514aa|up_6|NZ_LT618783.1_2034866_2036408_+	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system	cas3|871aa|up_5|NZ_LT618783.1_2036404_2039017_+	TIGR02621, CRISPR-associated_helicase_Cas3, CRISPR-associated helicase Cas3, subtype Dpsyc	csb3|333aa|up_4|NZ_LT618783.1_2039013_2040012_+	cd09764, Csb3_I-U, CRISPR/Cas system-associated RAMP superfamily protein Csb3	cas1|534aa|up_3|NZ_LT618783.1_2040001_2041603_+	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	cas2|101aa|up_2|NZ_LT618783.1_2041599_2041902_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|434aa|up_1|NZ_LT618783.1_2045045_2046347_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|436aa|up_0|NZ_LT618783.1_2049469_2050777_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|169aa|down_0|NZ_LT618783.1_2052120_2052627_+	NA	NA|172aa|down_1|NZ_LT618783.1_2052661_2053177_-	NA	NA|409aa|down_2|NZ_LT618783.1_2053347_2054574_-	PRK06849, PRK06849, hypothetical protein; Provisional	NA|80aa|down_3|NZ_LT618783.1_2055757_2055997_-	NA	NA|250aa|down_4|NZ_LT618783.1_2056089_2056839_-	pfam07510, DUF1524, Protein of unknown function (DUF1524)	NA|92aa|down_5|NZ_LT618783.1_2057296_2057572_+	NA	NA|439aa|down_6|NZ_LT618783.1_2057968_2059285_+	PRK12489, PRK12489, anaerobic C4-dicarboxylate transporter; Reviewed	NA|960aa|down_7|NZ_LT618783.1_2059805_2062685_+	cd09203, PLDc_N_DEXD_b1, N-terminal putative catalytic domain of uncharacterized prokaryotic and archeal HKD family nucleases fused to a DEAD/DEAH box helicase domain	NA|100aa|down_8|NZ_LT618783.1_2062685_2062985_-	NA	NA|334aa|down_9|NZ_LT618783.1_2063266_2064268_+	pfam13683, rve_3, Integrase core domain
GCF_900097245.1_PFRJS25	NZ_LT618783	Propionibacterium freudenreichii isolate PFRJS25 chromosome I	5	2366901-2367008	5	CRISPRCasFinder	no		csa3,cas3,WYL,DinG,DEDDh,csb1gr7,csb2gr5,csb3,cas1,cas2	Orphan	ACCTCGTTCCCGTGCTGGTGCCGGCGCTGTTGGTGGC	37	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,DinG,DEDDh,csb1gr7,csb2gr5,csb3,cas1,cas2	NA,NA|52aa|down_8|NZ_LT618783.1_2381063_2381219_+	NA|231aa|up_9|NZ_LT618783.1_2353711_2354404_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|476aa|up_8|NZ_LT618783.1_2354400_2355828_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|416aa|up_7|NZ_LT618783.1_2355856_2357104_-	cd17393, MFS_MosC_like, Membrane protein MosC and similar proteins of the Major Facilitator Superfamily of transporters	NA|357aa|up_6|NZ_LT618783.1_2357103_2358174_-	COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]	NA|259aa|up_5|NZ_LT618783.1_2358816_2359593_-	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|351aa|up_4|NZ_LT618783.1_2359683_2360736_-	COG0240, GpsA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion]	NA|519aa|up_3|NZ_LT618783.1_2360788_2362345_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|477aa|up_2|NZ_LT618783.1_2362774_2364205_-	TIGR03942, sulfatase_rSAM, anaerobic sulfatase-maturating enzyme	NA|334aa|up_1|NZ_LT618783.1_2364828_2365830_+	COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism]	NA|336aa|up_0|NZ_LT618783.1_2365826_2366834_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|673aa|down_0|NZ_LT618783.1_2370247_2372266_+	COG2015, COG2015, Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]	NA|104aa|down_1|NZ_LT618783.1_2373053_2373365_+	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system	NA|451aa|down_2|NZ_LT618783.1_2373427_2374780_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|322aa|down_3|NZ_LT618783.1_2375126_2376092_-	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|318aa|down_4|NZ_LT618783.1_2376460_2377414_+	TIGR04379, myo-inositol_catabolism_protein, myo-inosose-2 dehydratase	NA|337aa|down_5|NZ_LT618783.1_2377467_2378478_+	TIGR04380, hypothetical_protein_HOLDEFILI_04020, inositol 2-dehydrogenase	NA|289aa|down_6|NZ_LT618783.1_2378697_2379564_+	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]	NA|345aa|down_7|NZ_LT618783.1_2379712_2380747_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|52aa|down_8|NZ_LT618783.1_2381063_2381219_+	NA	NA|313aa|down_9|NZ_LT618783.1_2381396_2382335_+	pfam12146, Hydrolase_4, Serine aminopeptidase, S33
