assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900155405.1_PRJEB18760	NZ_LT700188	Negativicoccus massiliensis strain Marseille-P2082 genome assembly, chromosome: contig00001	1	164487-165117	1,1,1,2	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas9,cas1,cas2,csn2	DEDDh,cas9,cas1,cas2,csn2,csa3,WYL,cas3	Type II-C,Type II-A,Type II-B	AGTTTGAGAGTAGTGTCATATCCAATCCATCTCAAACCT,AGTTTGAGAGTAGTGTCATATCCAATCCATCTCAAAC,GTTTGAGAGTAGTGTCATATCCAATCCATCTCAAAC,GTTTGAGAGTAGTGTCATATCCAATCCATCTCAAAC	39,37,36,36	0	0	NA	NA	NA:NA:NA:NA	6,9,9,6	9	TypeII-C,TypeII-A,TypeII-B	DEDDh,cas9,cas1,cas2,csn2,csa3,WYL,cas3	NA,NA|210aa|down_1|NZ_LT700188.1_166595_167225_-	NA|191aa|up_9|NZ_LT700188.1_152025_152598_+	pfam09936, Methyltrn_RNA_4, SAM-dependent RNA methyltransferase	NA|247aa|up_8|NZ_LT700188.1_152610_153351_+	PRK00110, PRK00110, YebC/PmpR family DNA-binding transcriptional regulator	NA|306aa|up_7|NZ_LT700188.1_154057_154975_+	cd01016, TroA, Metal binding protein TroA	NA|255aa|up_6|NZ_LT700188.1_155041_155806_+	COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]	NA|302aa|up_5|NZ_LT700188.1_155789_156695_+	pfam00950, ABC-3, ABC 3 transport family	NA|374aa|up_4|NZ_LT700188.1_156678_157800_+	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]	cas9|1398aa|up_3|NZ_LT700188.1_158416_162610_+	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	cas1|295aa|up_2|NZ_LT700188.1_162606_163491_+	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas2|107aa|up_1|NZ_LT700188.1_163480_163801_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|222aa|up_0|NZ_LT700188.1_163797_164463_+	cd09644, Csn2, CRISPR/Cas system-associated protein Csn2	NA|365aa|down_0|NZ_LT700188.1_165470_166565_+	cd17507, GT28_Beta-DGS-like, beta-diglucosyldiacylglycerol synthase and similar proteins	NA|210aa|down_1|NZ_LT700188.1_166595_167225_-	NA	NA|160aa|down_2|NZ_LT700188.1_167554_168034_+	pfam04074, DUF386, Domain of unknown function (DUF386)	NA|186aa|down_3|NZ_LT700188.1_168155_168713_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|396aa|down_4|NZ_LT700188.1_168721_169909_+	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|1041aa|down_5|NZ_LT700188.1_169919_173042_+	TIGR00915, Probable_aminoglycoside_efflux_pump, The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family	NA|308aa|down_6|NZ_LT700188.1_173145_174069_+	PRK05427, PRK05427, putative manganese-dependent inorganic pyrophosphatase; Provisional	NA|734aa|down_7|NZ_LT700188.1_174108_176310_+	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|671aa|down_8|NZ_LT700188.1_176313_178326_+	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated	NA|95aa|down_9|NZ_LT700188.1_178387_178672_+	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC
GCF_900155405.1_PRJEB18760	NZ_LT700188	Negativicoccus massiliensis strain Marseille-P2082 genome assembly, chromosome: contig00001	2	519252-519331	2	CRISPRCasFinder	no		DEDDh,cas9,cas1,cas2,csn2,csa3,WYL,cas3	Orphan	TCGCGGTACCACCCTAATTATCA	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas9,cas1,cas2,csn2,csa3,WYL,cas3	NA,NA|207aa|down_5|NZ_LT700188.1_523692_524313_-	NA|240aa|up_9|NZ_LT700188.1_504659_505379_-	pfam10670, DUF4198, Domain of unknown function (DUF4198)	NA|223aa|up_8|NZ_LT700188.1_505777_506446_-	pfam07796, DUF1638, Protein of unknown function (DUF1638)	NA|406aa|up_7|NZ_LT700188.1_512015_513233_-	cd01116, P_permease, Permease P (pink-eyed dilution)	NA|291aa|up_6|NZ_LT700188.1_513770_514643_-	PRK00811, PRK00811, polyamine aminopropyltransferase	NA|204aa|up_5|NZ_LT700188.1_514644_515256_-	pfam05103, DivIVA, DivIVA protein	NA|262aa|up_4|NZ_LT700188.1_515270_516056_-	COG2302, COG2302, Uncharacterized conserved protein, contains S4-like domain [Function unknown]	NA|268aa|up_3|NZ_LT700188.1_516048_516852_-	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|154aa|up_2|NZ_LT700188.1_516848_517310_-	pfam04472, SepF, Cell division protein SepF	NA|229aa|up_1|NZ_LT700188.1_517324_518011_-	cd00635, PLPDE_III_YBL036c_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins	NA|330aa|up_0|NZ_LT700188.1_518200_519190_-	cd06325, PBP1_ABC_unchar_transporter, type 1 periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions	NA|147aa|down_0|NZ_LT700188.1_519531_519972_-	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|146aa|down_1|NZ_LT700188.1_519968_520406_-	cd02222, cupin_TM1459-like, Thermotoga maritima TM1459 and related proteins, cupin domain	NA|255aa|down_2|NZ_LT700188.1_520494_521259_+	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|457aa|down_3|NZ_LT700188.1_521292_522663_+	PRK02256, PRK02256, putative aminopeptidase 1; Provisional	NA|313aa|down_4|NZ_LT700188.1_522708_523647_-	TIGR01136, Cysteine_synthase, cysteine synthase	NA|207aa|down_5|NZ_LT700188.1_523692_524313_-	NA	NA|144aa|down_6|NZ_LT700188.1_524325_524757_-	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]	NA|238aa|down_7|NZ_LT700188.1_524753_525467_-	cd00755, YgdL_like, Family of activating enzymes (E1) of ubiquitin-like proteins related to the E	NA|124aa|down_8|NZ_LT700188.1_525466_525838_-	cd07233, GlxI_Zn, Glyoxalase I that uses Zn(++) as cofactor	NA|1023aa|down_9|NZ_LT700188.1_525917_528986_-	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]
GCF_900155405.1_PRJEB18760	NZ_LT700188	Negativicoccus massiliensis strain Marseille-P2082 genome assembly, chromosome: contig00001	3	994889-995040	3	CRISPRCasFinder	no	WYL	DEDDh,cas9,cas1,cas2,csn2,csa3,WYL,cas3	Unclear	AGCCAAAGCTACAAACGAAAAGGACGGGGGGCTGCCCGTCCTTTTCCCTT	50	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas9,cas1,cas2,csn2,csa3,WYL,cas3	NA|129aa|up_5|NZ_LT700188.1_989105_989492_-,NA|95aa|up_2|NZ_LT700188.1_993394_993679_-,NA|199aa|up_1|NZ_LT700188.1_994063_994660_+,NA|139aa|down_0|NZ_LT700188.1_995340_995757_-,NA|63aa|down_5|NZ_LT700188.1_998357_998546_-	NA|137aa|up_9|NZ_LT700188.1_985974_986385_+	pfam03938, OmpH, Outer membrane protein (OmpH-like)	NA|131aa|up_8|NZ_LT700188.1_986785_987178_+	pfam02261, Asp_decarbox, Aspartate decarboxylase	NA|284aa|up_7|NZ_LT700188.1_987232_988084_+	pfam02569, Pantoate_ligase, Pantoate-beta-alanine ligase	NA|326aa|up_6|NZ_LT700188.1_988080_989058_+	COG0385, COG0385, Predicted Na+-dependent transporter [General function prediction only]	NA|129aa|up_5|NZ_LT700188.1_989105_989492_-	NA	NA|386aa|up_4|NZ_LT700188.1_989512_990670_-	cd17339, MFS_NIMT_CynX_like, 2-nitroimidazole and cyanate transporters and similar proteins of the Major Facilitator Superfamily of transporters	NA|817aa|up_3|NZ_LT700188.1_990895_993346_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|95aa|up_2|NZ_LT700188.1_993394_993679_-	NA	NA|199aa|up_1|NZ_LT700188.1_994063_994660_+	NA	NA|83aa|up_0|NZ_LT700188.1_994589_994838_+	pfam13475, DUF4116, Domain of unknown function (DUF4116)	NA|139aa|down_0|NZ_LT700188.1_995340_995757_-	NA	NA|325aa|down_1|NZ_LT700188.1_996073_997048_-	cd12827, EcCorA_ZntB-like_u2, uncharacterized bacterial subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB family	NA|97aa|down_2|NZ_LT700188.1_997260_997551_+	cd00473, bS6, Bacterial ribosomal protein S6	NA|155aa|down_3|NZ_LT700188.1_997566_998031_+	pfam00436, SSB, Single-strand binding protein family	NA|77aa|down_4|NZ_LT700188.1_998056_998287_+	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed	NA|63aa|down_5|NZ_LT700188.1_998357_998546_-	NA	NA|355aa|down_6|NZ_LT700188.1_999017_1000082_+	pfam03895, YadA_anchor, YadA-like membrane anchor domain	NA|190aa|down_7|NZ_LT700188.1_1000253_1000823_-	pfam14278, TetR_C_8, Transcriptional regulator C-terminal region	NA|640aa|down_8|NZ_LT700188.1_1001035_1002955_+	COG2217, ZntA, Cation transport ATPase [Inorganic ion transport and metabolism]	NA|86aa|down_9|NZ_LT700188.1_1003036_1003294_-	pfam06107, DUF951, Bacterial protein of unknown function (DUF951)
