assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900174625.1_WI1-reUpload	NZ_LT838196	Escherichia coli isolate WI1 isolate chromosome WI1	1	1010179-1010818	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	Orphan	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCGN	29,29,30	0	0	NA	NA	I-E:I-E:I-E	9,9,10	10	Orphan	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	NA|47aa|up_1|NZ_LT838196.1_1008889_1009030_-,NA	NA|434aa|up_9|NZ_LT838196.1_999586_1000888_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NZ_LT838196.1_1000935_1003170_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|NZ_LT838196.1_1003247_1003496_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|NZ_LT838196.1_1003495_1003831_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|NZ_LT838196.1_1003901_1004693_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NZ_LT838196.1_1004920_1006558_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NZ_LT838196.1_1006645_1007944_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|NZ_LT838196.1_1008003_1008876_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|NZ_LT838196.1_1008889_1009030_-	NA	NA|224aa|up_0|NZ_LT838196.1_1009168_1009840_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|371aa|down_0|NZ_LT838196.1_1010967_1012080_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|493aa|down_1|NZ_LT838196.1_1012867_1014346_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|262aa|down_2|NZ_LT838196.1_1015969_1016755_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_LT838196.1_1016824_1018279_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_4|NZ_LT838196.1_1018300_1019710_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_LT838196.1_1019687_1020467_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_LT838196.1_1020463_1021324_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_LT838196.1_1021472_1022048_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_LT838196.1_1022064_1022325_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_LT838196.1_1022315_1023587_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_900174625.1_WI1-reUpload	NZ_LT838196	Escherichia coli isolate WI1 isolate chromosome WI1	2	1012140-1012229	2	CRISPRCasFinder	no	cas3	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	Unclear	GAGTTCCCCGCGCCAGCGGGGATAAACCG	29	0	0	NA	NA	I-E	1	1	Unclear	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	NA|47aa|up_2|NZ_LT838196.1_1008889_1009030_-,NA	NA|745aa|up_9|NZ_LT838196.1_1000935_1003170_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_8|NZ_LT838196.1_1003247_1003496_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_7|NZ_LT838196.1_1003495_1003831_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_6|NZ_LT838196.1_1003901_1004693_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_5|NZ_LT838196.1_1004920_1006558_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_4|NZ_LT838196.1_1006645_1007944_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_3|NZ_LT838196.1_1008003_1008876_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_2|NZ_LT838196.1_1008889_1009030_-	NA	NA|224aa|up_1|NZ_LT838196.1_1009168_1009840_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|371aa|up_0|NZ_LT838196.1_1010967_1012080_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|493aa|down_0|NZ_LT838196.1_1012867_1014346_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|262aa|down_1|NZ_LT838196.1_1015969_1016755_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_2|NZ_LT838196.1_1016824_1018279_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_3|NZ_LT838196.1_1018300_1019710_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_4|NZ_LT838196.1_1019687_1020467_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_5|NZ_LT838196.1_1020463_1021324_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_6|NZ_LT838196.1_1021472_1022048_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_7|NZ_LT838196.1_1022064_1022325_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_8|NZ_LT838196.1_1022315_1023587_-	PRK10015, PRK10015, oxidoreductase; Provisional	NA|121aa|down_9|NZ_LT838196.1_1023664_1024027_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)
GCF_900174625.1_WI1-reUpload	NZ_LT838196	Escherichia coli isolate WI1 isolate chromosome WI1	3	1037780-1038540	3,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	Type I-E	GAGTTCCCCGCGTCAGCGGGGATAAACCG,GNGTTCCCCGCGNCAGCGGGGATAAACCG,GTTCCCCGCGTCAGCGGGGATAAACCG	29,29,27	0	0	NA	NA	I-E:I-E:I-E	12,12,12	12	TypeI-E	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	NA,NA	NA|571aa|up_9|NZ_LT838196.1_1026144_1027857_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_8|NZ_LT838196.1_1027930_1028665_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	cas3|889aa|up_7|NZ_LT838196.1_1029023_1031690_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|503aa|up_6|NZ_LT838196.1_1032104_1033613_+	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cse2gr11|161aa|up_5|NZ_LT838196.1_1033605_1034088_+	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|364aa|up_4|NZ_LT838196.1_1034100_1035192_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|225aa|up_3|NZ_LT838196.1_1035194_1035869_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas6e|200aa|up_2|NZ_LT838196.1_1035855_1036455_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|306aa|up_1|NZ_LT838196.1_1036470_1037388_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|95aa|up_0|NZ_LT838196.1_1037389_1037674_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_LT838196.1_1038621_1039659_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_LT838196.1_1039910_1040819_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_LT838196.1_1040820_1042248_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_LT838196.1_1042247_1042853_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_LT838196.1_1042902_1043226_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_LT838196.1_1043419_1043731_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_LT838196.1_1043749_1044460_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_LT838196.1_1044459_1044939_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_LT838196.1_1044935_1045985_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_LT838196.1_1045965_1046727_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_900174625.1_WI1-reUpload	NZ_LT838196	Escherichia coli isolate WI1 isolate chromosome WI1	4	1574109-1574226	4	CRISPRCasFinder	no		cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	NA,NA	NA|62aa|up_9|NZ_LT838196.1_1563394_1563580_-	PRK09956, PRK09956, ISNCY family transposase	NA|300aa|up_8|NZ_LT838196.1_1563592_1564492_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_7|NZ_LT838196.1_1564684_1565875_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_6|NZ_LT838196.1_1565871_1567131_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_5|NZ_LT838196.1_1567120_1568749_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_4|NZ_LT838196.1_1569021_1570380_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_3|NZ_LT838196.1_1570384_1571461_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|217aa|up_2|NZ_LT838196.1_1571923_1572574_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_LT838196.1_1572627_1572882_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_LT838196.1_1572881_1574012_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_LT838196.1_1574245_1576531_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1218aa|down_1|NZ_LT838196.1_1577226_1580880_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_LT838196.1_1581007_1581730_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_LT838196.1_1581876_1584504_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NZ_LT838196.1_1584652_1586341_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_LT838196.1_1586337_1586961_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1465aa|down_6|NZ_LT838196.1_1587104_1591499_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_7|NZ_LT838196.1_1591499_1593149_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_8|NZ_LT838196.1_1593153_1593930_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_9|NZ_LT838196.1_1594003_1595188_-	PRK05790, PRK05790, putative acyltransferase; Provisional
GCF_900174625.1_WI1-reUpload	NZ_LT838196	Escherichia coli isolate WI1 isolate chromosome WI1	5	2185967-2186090	5	CRISPRCasFinder	no	DEDDh	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	NA,NA|30aa|down_7|NZ_LT838196.1_2194986_2195076_+	NA|471aa|up_9|NZ_LT838196.1_2175421_2176834_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_LT838196.1_2177390_2177600_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_LT838196.1_2178054_2178681_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_LT838196.1_2178701_2180804_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_LT838196.1_2180816_2181455_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_LT838196.1_2181518_2182187_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_LT838196.1_2182183_2182969_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_LT838196.1_2182972_2183785_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_LT838196.1_2183796_2185401_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_LT838196.1_2185526_2185832_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_LT838196.1_2186404_2187661_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_LT838196.1_2187701_2189075_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_LT838196.1_2189289_2189931_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_LT838196.1_2189970_2191119_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_LT838196.1_2191409_2192621_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_LT838196.1_2192733_2193666_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_LT838196.1_2193662_2194688_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_LT838196.1_2194986_2195076_+	NA	NA|390aa|down_8|NZ_LT838196.1_2195241_2196411_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_LT838196.1_2196645_2197227_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_900174625.1_WI1-reUpload	NZ_LT838196	Escherichia coli isolate WI1 isolate chromosome WI1	6	2923188-2923279	6	CRISPRCasFinder	no		cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	NA|70aa|up_9|NZ_LT838196.1_2912264_2912474_-,NA	NA|70aa|up_9|NZ_LT838196.1_2912264_2912474_-	NA	NA|1321aa|up_8|NZ_LT838196.1_2912528_2916491_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_LT838196.1_2916530_2917169_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_LT838196.1_2917456_2918548_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_LT838196.1_2918547_2919240_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_LT838196.1_2919251_2919638_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_LT838196.1_2919645_2920446_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_LT838196.1_2920455_2921046_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_LT838196.1_2921056_2921551_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_LT838196.1_2921571_2922900_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_LT838196.1_2923702_2924299_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_LT838196.1_2924319_2924547_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_LT838196.1_2924584_2925826_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|419aa|down_3|NZ_LT838196.1_2926118_2927375_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_LT838196.1_2927635_2928556_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_LT838196.1_2928555_2928861_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_LT838196.1_2929012_2929612_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_LT838196.1_2929608_2932155_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_LT838196.1_2932154_2933327_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_LT838196.1_2933456_2934149_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_900174625.1_WI1-reUpload	NZ_LT838196	Escherichia coli isolate WI1 isolate chromosome WI1	7	3234544-3234688	7	CRISPRCasFinder	no		cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	NA|94aa|up_7|NZ_LT838196.1_3229878_3230160_+,NA|94aa|up_4|NZ_LT838196.1_3231216_3231498_+,NA|56aa|up_3|NZ_LT838196.1_3231586_3231754_+,NA	NA|61aa|up_9|NZ_LT838196.1_3229521_3229704_+	pfam07026, DUF1317, Protein of unknown function (DUF1317)	NA|64aa|up_8|NZ_LT838196.1_3229676_3229868_+	pfam07131, DUF1382, Protein of unknown function (DUF1382)	NA|94aa|up_7|NZ_LT838196.1_3229878_3230160_+	NA	NA|74aa|up_6|NZ_LT838196.1_3230258_3230480_+	PHA00080, PHA00080, DksA-like zinc finger domain containing protein	NA|183aa|up_5|NZ_LT838196.1_3230476_3231025_+	pfam13935, Ead_Ea22, Ead/Ea22-like protein	NA|94aa|up_4|NZ_LT838196.1_3231216_3231498_+	NA	NA|56aa|up_3|NZ_LT838196.1_3231586_3231754_+	NA	NA|73aa|up_2|NZ_LT838196.1_3231793_3232012_+	pfam07825, Exc, Excisionase-like protein	NA|357aa|up_1|NZ_LT838196.1_3231989_3233060_+	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase	NA|428aa|up_0|NZ_LT838196.1_3233194_3234478_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_LT838196.1_3234711_3236973_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_LT838196.1_3237155_3238589_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_LT838196.1_3238664_3239717_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_LT838196.1_3239900_3240854_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_LT838196.1_3240894_3241890_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_LT838196.1_3242044_3242863_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_LT838196.1_3242863_3243922_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_LT838196.1_3243924_3244614_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_LT838196.1_3244613_3245387_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NZ_LT838196.1_3245553_3245703_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_900174625.1_WI1-reUpload	NZ_LT838196	Escherichia coli isolate WI1 isolate chromosome WI1	8	3468870-3468966	8	CRISPRCasFinder	no		cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	NA,NA	NA|231aa|up_9|NZ_LT838196.1_3460665_3461358_-	PRK15195, PRK15195, molecular chaperone FimC	NA|181aa|up_8|NZ_LT838196.1_3461577_3462120_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|289aa|up_7|NZ_LT838196.1_3462590_3463457_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|NZ_LT838196.1_3463458_3463671_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|NZ_LT838196.1_3463778_3464300_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|NZ_LT838196.1_3464335_3465721_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|NZ_LT838196.1_3465894_3466389_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|NZ_LT838196.1_3466391_3467114_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|NZ_LT838196.1_3467231_3467741_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|NZ_LT838196.1_3467737_3468805_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|NZ_LT838196.1_3468999_3469893_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|NZ_LT838196.1_3469889_3470705_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|NZ_LT838196.1_3470715_3471975_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|NZ_LT838196.1_3471984_3473652_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|NZ_LT838196.1_3473968_3475018_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|412aa|down_5|NZ_LT838196.1_3475039_3476275_+	TIGR03176, AllC, allantoate amidohydrolase	NA|262aa|down_6|NZ_LT838196.1_3476285_3477071_+	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|382aa|down_7|NZ_LT838196.1_3477298_3478444_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_8|NZ_LT838196.1_3478465_3479767_-	PRK11412, PRK11412, uracil/xanthine transporter	NA|454aa|down_9|NZ_LT838196.1_3479823_3481185_-	PRK08044, PRK08044, allantoinase AllB
GCF_900174625.1_WI1-reUpload	NZ_LT838196	Escherichia coli isolate WI1 isolate chromosome WI1	9	3609011-3609155	9	CRISPRCasFinder	no		cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	Orphan	TTTTGCAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	NA,NA|28aa|down_2|NZ_LT838196.1_3611200_3611284_-	NA|357aa|up_9|NZ_LT838196.1_3594149_3595220_-	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|194aa|up_8|NZ_LT838196.1_3595312_3595894_+	PRK10045, PRK10045, ACP phosphodiesterase	NA|606aa|up_7|NZ_LT838196.1_3595898_3597716_-	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|458aa|up_6|NZ_LT838196.1_3597871_3599245_-	PRK10580, proY, putative proline-specific permease; Provisional	NA|440aa|up_5|NZ_LT838196.1_3599320_3600640_-	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|432aa|up_4|NZ_LT838196.1_3601046_3602342_-	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|230aa|up_3|NZ_LT838196.1_3602399_3603089_-	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|401aa|up_2|NZ_LT838196.1_3603278_3604481_+	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|1049aa|up_1|NZ_LT838196.1_3604477_3607624_+	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|395aa|up_0|NZ_LT838196.1_3607749_3608934_+	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|303aa|down_0|NZ_LT838196.1_3609178_3610087_-	PRK09557, PRK09557, fructokinase; Reviewed	NA|304aa|down_1|NZ_LT838196.1_3610211_3611123_+	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|28aa|down_2|NZ_LT838196.1_3611200_3611284_-	NA	NA|95aa|down_3|NZ_LT838196.1_3611769_3612054_-	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|226aa|down_4|NZ_LT838196.1_3612125_3612803_-	PRK10481, PRK10481, hypothetical protein; Provisional	NA|64aa|down_5|NZ_LT838196.1_3613060_3613252_-	PRK10380, PRK10380, hypothetical protein; Provisional	NA|175aa|down_6|NZ_LT838196.1_3613301_3613826_-	PRK03731, aroL, shikimate kinase AroL	NA|153aa|down_7|NZ_LT838196.1_3614008_3614467_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|270aa|down_8|NZ_LT838196.1_3614586_3615396_+	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|372aa|down_9|NZ_LT838196.1_3615412_3616528_-	PRK10245, adrA, diguanylate cyclase AdrA; Provisional
