assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900174635.1_WI2	NZ_LT838200	Escherichia coli isolate WI2 isolate chromosome WI2	1	1010179-1010818	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	Orphan	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCGN	29,29,30	0	0	NA	NA	I-E:I-E:I-E	9,9,10	10	Orphan	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	NA|47aa|up_1|NZ_LT838200.1_1008889_1009030_-,NA	NA|434aa|up_9|NZ_LT838200.1_999586_1000888_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NZ_LT838200.1_1000935_1003170_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|NZ_LT838200.1_1003247_1003496_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|NZ_LT838200.1_1003495_1003831_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|NZ_LT838200.1_1003901_1004693_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NZ_LT838200.1_1004920_1006558_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NZ_LT838200.1_1006645_1007944_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|NZ_LT838200.1_1008003_1008876_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|NZ_LT838200.1_1008889_1009030_-	NA	NA|224aa|up_0|NZ_LT838200.1_1009168_1009840_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|371aa|down_0|NZ_LT838200.1_1010967_1012080_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|493aa|down_1|NZ_LT838200.1_1012867_1014346_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|262aa|down_2|NZ_LT838200.1_1015969_1016755_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_LT838200.1_1016824_1018279_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_4|NZ_LT838200.1_1018300_1019710_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_LT838200.1_1019687_1020467_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_LT838200.1_1020463_1021324_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_LT838200.1_1021472_1022048_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_LT838200.1_1022064_1022325_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_LT838200.1_1022315_1023587_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_900174635.1_WI2	NZ_LT838200	Escherichia coli isolate WI2 isolate chromosome WI2	2	1012140-1012229	2	CRISPRCasFinder	no	cas3	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	Unclear	GAGTTCCCCGCGCCAGCGGGGATAAACCG	29	0	0	NA	NA	I-E	1	1	Unclear	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	NA|47aa|up_2|NZ_LT838200.1_1008889_1009030_-,NA	NA|745aa|up_9|NZ_LT838200.1_1000935_1003170_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_8|NZ_LT838200.1_1003247_1003496_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_7|NZ_LT838200.1_1003495_1003831_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_6|NZ_LT838200.1_1003901_1004693_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_5|NZ_LT838200.1_1004920_1006558_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_4|NZ_LT838200.1_1006645_1007944_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_3|NZ_LT838200.1_1008003_1008876_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_2|NZ_LT838200.1_1008889_1009030_-	NA	NA|224aa|up_1|NZ_LT838200.1_1009168_1009840_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|371aa|up_0|NZ_LT838200.1_1010967_1012080_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|493aa|down_0|NZ_LT838200.1_1012867_1014346_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|262aa|down_1|NZ_LT838200.1_1015969_1016755_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_2|NZ_LT838200.1_1016824_1018279_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_3|NZ_LT838200.1_1018300_1019710_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_4|NZ_LT838200.1_1019687_1020467_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_5|NZ_LT838200.1_1020463_1021324_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_6|NZ_LT838200.1_1021472_1022048_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_7|NZ_LT838200.1_1022064_1022325_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_8|NZ_LT838200.1_1022315_1023587_-	PRK10015, PRK10015, oxidoreductase; Provisional	NA|121aa|down_9|NZ_LT838200.1_1023664_1024027_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)
GCF_900174635.1_WI2	NZ_LT838200	Escherichia coli isolate WI2 isolate chromosome WI2	3	1037780-1038540	3,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	Type I-E	GAGTTCCCCGCGTCAGCGGGGATAAACCG,GNGTTCCCCGCGNCAGCGGGGATAAACCG,GTTCCCCGCGTCAGCGGGGATAAACCG	29,29,27	0	0	NA	NA	I-E:I-E:I-E	12,12,12	12	TypeI-E	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	NA,NA	NA|571aa|up_9|NZ_LT838200.1_1026144_1027857_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_8|NZ_LT838200.1_1027930_1028665_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	cas3|889aa|up_7|NZ_LT838200.1_1029023_1031690_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|503aa|up_6|NZ_LT838200.1_1032104_1033613_+	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cse2gr11|161aa|up_5|NZ_LT838200.1_1033605_1034088_+	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|364aa|up_4|NZ_LT838200.1_1034100_1035192_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|225aa|up_3|NZ_LT838200.1_1035194_1035869_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas6e|200aa|up_2|NZ_LT838200.1_1035855_1036455_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|306aa|up_1|NZ_LT838200.1_1036470_1037388_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|95aa|up_0|NZ_LT838200.1_1037389_1037674_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_LT838200.1_1038621_1039659_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_LT838200.1_1039910_1040819_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_LT838200.1_1040820_1042248_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_LT838200.1_1042247_1042853_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_LT838200.1_1042902_1043226_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_LT838200.1_1043419_1043731_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_LT838200.1_1043749_1044460_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_LT838200.1_1044459_1044939_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_LT838200.1_1044935_1045985_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_LT838200.1_1045965_1046727_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_900174635.1_WI2	NZ_LT838200	Escherichia coli isolate WI2 isolate chromosome WI2	4	1574108-1574225	4	CRISPRCasFinder	no		cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	NA,NA	NA|62aa|up_9|NZ_LT838200.1_1563393_1563579_-	PRK09956, PRK09956, ISNCY family transposase	NA|300aa|up_8|NZ_LT838200.1_1563591_1564491_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_7|NZ_LT838200.1_1564683_1565874_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_6|NZ_LT838200.1_1565870_1567130_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_5|NZ_LT838200.1_1567119_1568748_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_4|NZ_LT838200.1_1569020_1570379_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_3|NZ_LT838200.1_1570383_1571460_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|217aa|up_2|NZ_LT838200.1_1571922_1572573_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_LT838200.1_1572626_1572881_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_LT838200.1_1572880_1574011_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_LT838200.1_1574244_1576530_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1218aa|down_1|NZ_LT838200.1_1577225_1580879_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_LT838200.1_1581006_1581729_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_LT838200.1_1581875_1584503_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NZ_LT838200.1_1584651_1586340_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_LT838200.1_1586336_1586960_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1465aa|down_6|NZ_LT838200.1_1587103_1591498_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_7|NZ_LT838200.1_1591498_1593148_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_8|NZ_LT838200.1_1593152_1593929_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_9|NZ_LT838200.1_1594002_1595187_-	PRK05790, PRK05790, putative acyltransferase; Provisional
GCF_900174635.1_WI2	NZ_LT838200	Escherichia coli isolate WI2 isolate chromosome WI2	5	2185975-2186098	5	CRISPRCasFinder	no	DEDDh	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	NA,NA|30aa|down_7|NZ_LT838200.1_2194994_2195084_+	NA|471aa|up_9|NZ_LT838200.1_2175429_2176842_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_LT838200.1_2177398_2177608_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_LT838200.1_2178062_2178689_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_LT838200.1_2178709_2180812_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_LT838200.1_2180824_2181463_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_LT838200.1_2181526_2182195_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_LT838200.1_2182191_2182977_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_LT838200.1_2182980_2183793_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_LT838200.1_2183804_2185409_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_LT838200.1_2185534_2185840_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_LT838200.1_2186412_2187669_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_LT838200.1_2187709_2189083_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_LT838200.1_2189297_2189939_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_LT838200.1_2189978_2191127_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_LT838200.1_2191417_2192629_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_LT838200.1_2192741_2193674_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_LT838200.1_2193670_2194696_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_LT838200.1_2194994_2195084_+	NA	NA|390aa|down_8|NZ_LT838200.1_2195249_2196419_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_LT838200.1_2196653_2197235_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_900174635.1_WI2	NZ_LT838200	Escherichia coli isolate WI2 isolate chromosome WI2	6	2926060-2926151	6	CRISPRCasFinder	no		cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	NA|70aa|up_9|NZ_LT838200.1_2915136_2915346_-,NA	NA|70aa|up_9|NZ_LT838200.1_2915136_2915346_-	NA	NA|1321aa|up_8|NZ_LT838200.1_2915400_2919363_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_LT838200.1_2919402_2920041_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_LT838200.1_2920328_2921420_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_LT838200.1_2921419_2922112_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_LT838200.1_2922123_2922510_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_LT838200.1_2922517_2923318_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_LT838200.1_2923327_2923918_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_LT838200.1_2923928_2924423_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_LT838200.1_2924443_2925772_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_LT838200.1_2926574_2927171_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_LT838200.1_2927191_2927419_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_LT838200.1_2927456_2928698_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|419aa|down_3|NZ_LT838200.1_2928990_2930247_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_LT838200.1_2930507_2931428_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_LT838200.1_2931427_2931733_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_LT838200.1_2931884_2932484_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_LT838200.1_2932480_2935027_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_LT838200.1_2935026_2936199_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_LT838200.1_2936328_2937021_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_900174635.1_WI2	NZ_LT838200	Escherichia coli isolate WI2 isolate chromosome WI2	7	3237416-3237560	7	CRISPRCasFinder	no		cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	NA|94aa|up_7|NZ_LT838200.1_3232750_3233032_+,NA|94aa|up_4|NZ_LT838200.1_3234088_3234370_+,NA|56aa|up_3|NZ_LT838200.1_3234458_3234626_+,NA	NA|61aa|up_9|NZ_LT838200.1_3232393_3232576_+	pfam07026, DUF1317, Protein of unknown function (DUF1317)	NA|64aa|up_8|NZ_LT838200.1_3232548_3232740_+	pfam07131, DUF1382, Protein of unknown function (DUF1382)	NA|94aa|up_7|NZ_LT838200.1_3232750_3233032_+	NA	NA|74aa|up_6|NZ_LT838200.1_3233130_3233352_+	PHA00080, PHA00080, DksA-like zinc finger domain containing protein	NA|183aa|up_5|NZ_LT838200.1_3233348_3233897_+	pfam13935, Ead_Ea22, Ead/Ea22-like protein	NA|94aa|up_4|NZ_LT838200.1_3234088_3234370_+	NA	NA|56aa|up_3|NZ_LT838200.1_3234458_3234626_+	NA	NA|73aa|up_2|NZ_LT838200.1_3234665_3234884_+	pfam07825, Exc, Excisionase-like protein	NA|357aa|up_1|NZ_LT838200.1_3234861_3235932_+	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase	NA|428aa|up_0|NZ_LT838200.1_3236066_3237350_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_LT838200.1_3237583_3239845_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_LT838200.1_3240027_3241461_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_LT838200.1_3241536_3242589_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_LT838200.1_3242772_3243726_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_LT838200.1_3243766_3244762_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_LT838200.1_3244916_3245735_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_LT838200.1_3245735_3246794_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_LT838200.1_3246796_3247486_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_LT838200.1_3247485_3248259_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NZ_LT838200.1_3248425_3248575_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_900174635.1_WI2	NZ_LT838200	Escherichia coli isolate WI2 isolate chromosome WI2	8	3471742-3471838	8	CRISPRCasFinder	no		cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	NA,NA	NA|231aa|up_9|NZ_LT838200.1_3463537_3464230_-	PRK15195, PRK15195, molecular chaperone FimC	NA|181aa|up_8|NZ_LT838200.1_3464449_3464992_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|289aa|up_7|NZ_LT838200.1_3465462_3466329_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|NZ_LT838200.1_3466330_3466543_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|NZ_LT838200.1_3466650_3467172_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|NZ_LT838200.1_3467207_3468593_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|NZ_LT838200.1_3468766_3469261_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|NZ_LT838200.1_3469263_3469986_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|NZ_LT838200.1_3470103_3470613_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|NZ_LT838200.1_3470609_3471677_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|NZ_LT838200.1_3471871_3472765_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|NZ_LT838200.1_3472761_3473577_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|NZ_LT838200.1_3473587_3474847_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|NZ_LT838200.1_3474856_3476524_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|NZ_LT838200.1_3476840_3477890_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|412aa|down_5|NZ_LT838200.1_3477911_3479147_+	TIGR03176, AllC, allantoate amidohydrolase	NA|262aa|down_6|NZ_LT838200.1_3479157_3479943_+	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|382aa|down_7|NZ_LT838200.1_3480170_3481316_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_8|NZ_LT838200.1_3481337_3482639_-	PRK11412, PRK11412, uracil/xanthine transporter	NA|454aa|down_9|NZ_LT838200.1_3482695_3484057_-	PRK08044, PRK08044, allantoinase AllB
GCF_900174635.1_WI2	NZ_LT838200	Escherichia coli isolate WI2 isolate chromosome WI2	9	3611883-3612027	9	CRISPRCasFinder	no		cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	Orphan	TTTTGCAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	NA,NA|28aa|down_2|NZ_LT838200.1_3614072_3614156_-	NA|357aa|up_9|NZ_LT838200.1_3597021_3598092_-	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|194aa|up_8|NZ_LT838200.1_3598184_3598766_+	PRK10045, PRK10045, ACP phosphodiesterase	NA|606aa|up_7|NZ_LT838200.1_3598770_3600588_-	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|458aa|up_6|NZ_LT838200.1_3600743_3602117_-	PRK10580, proY, putative proline-specific permease; Provisional	NA|440aa|up_5|NZ_LT838200.1_3602192_3603512_-	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|432aa|up_4|NZ_LT838200.1_3603918_3605214_-	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|230aa|up_3|NZ_LT838200.1_3605271_3605961_-	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|401aa|up_2|NZ_LT838200.1_3606150_3607353_+	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|1049aa|up_1|NZ_LT838200.1_3607349_3610496_+	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|395aa|up_0|NZ_LT838200.1_3610621_3611806_+	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|303aa|down_0|NZ_LT838200.1_3612050_3612959_-	PRK09557, PRK09557, fructokinase; Reviewed	NA|304aa|down_1|NZ_LT838200.1_3613083_3613995_+	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|28aa|down_2|NZ_LT838200.1_3614072_3614156_-	NA	NA|95aa|down_3|NZ_LT838200.1_3614641_3614926_-	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|226aa|down_4|NZ_LT838200.1_3614997_3615675_-	PRK10481, PRK10481, hypothetical protein; Provisional	NA|64aa|down_5|NZ_LT838200.1_3615932_3616124_-	PRK10380, PRK10380, hypothetical protein; Provisional	NA|175aa|down_6|NZ_LT838200.1_3616173_3616698_-	PRK03731, aroL, shikimate kinase AroL	NA|153aa|down_7|NZ_LT838200.1_3616880_3617339_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|270aa|down_8|NZ_LT838200.1_3617458_3618268_+	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|372aa|down_9|NZ_LT838200.1_3618284_3619400_-	PRK10245, adrA, diguanylate cyclase AdrA; Provisional
