assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900183995.1_PD5205.1	NZ_LT853885	Xanthomonas fragariae strain PD5205 chromosome 1	1	561359-561459	1	CRISPRCasFinder	no		cas3,WYL,DEDDh,DinG,csa3,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	Orphan	GCTGACTTGGTGCGGCGCAGGCGTGGCAAACTGTCCAG	38	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,DEDDh,DinG,csa3,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	NA|72aa|up_2|NZ_LT853885.1_558134_558350_+,NA|235aa|up_0|NZ_LT853885.1_560487_561192_-,NA	NA|347aa|up_9|NZ_LT853885.1_539653_540694_+	cd08260, Zn_ADH6, Alcohol dehydrogenases of the MDR family	NA|2052aa|up_8|NZ_LT853885.1_541267_547423_+	PRK09169, PRK09169, hypothetical protein; Validated	NA|261aa|up_7|NZ_LT853885.1_547656_548438_-	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|529aa|up_6|NZ_LT853885.1_549354_550941_-	COG1028, FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]	NA|775aa|up_5|NZ_LT853885.1_551830_554155_-	pfam00930, DPPIV_N, Dipeptidyl peptidase IV (DPP IV) N-terminal region	NA|364aa|up_4|NZ_LT853885.1_554437_555529_-	pfam07759, DUF1615, Protein of unknown function (DUF1615)	NA|287aa|up_3|NZ_LT853885.1_555737_556598_-	COG2521, COG2521, Predicted archaeal methyltransferase [General function prediction only]	NA|72aa|up_2|NZ_LT853885.1_558134_558350_+	NA	NA|453aa|up_1|NZ_LT853885.1_558969_560328_+	PRK11049, PRK11049, D-alanine/D-serine/glycine permease; Provisional	NA|235aa|up_0|NZ_LT853885.1_560487_561192_-	NA	NA|304aa|down_0|NZ_LT853885.1_561842_562754_+	cd12837, EcCorA-like_u1, uncharacterized subgroup of the Escherichia coli Mg2+ transporter CorA_like subfamily	NA|232aa|down_1|NZ_LT853885.1_563301_563997_-	COG2013, COG2013, Uncharacterized conserved protein [Function unknown]	NA|558aa|down_2|NZ_LT853885.1_564384_566058_-	PRK13272, treA, alpha,alpha-trehalase TreA	NA|357aa|down_3|NZ_LT853885.1_568290_569361_+	PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated	NA|964aa|down_4|NZ_LT853885.1_569387_572279_-	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|902aa|down_5|NZ_LT853885.1_572636_575342_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|469aa|down_6|NZ_LT853885.1_576935_578342_-	COG2730, BglC, Endoglucanase [Carbohydrate transport and metabolism]	NA|496aa|down_7|NZ_LT853885.1_578550_580038_+	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	NA|646aa|down_8|NZ_LT853885.1_580636_582574_+	PRK05454, PRK05454, glucans biosynthesis glucosyltransferase MdoH	NA|223aa|down_9|NZ_LT853885.1_582723_583392_+	COG0400, COG0400, Predicted esterase [General function prediction only]
GCF_900183995.1_PD5205.1	NZ_LT853885	Xanthomonas fragariae strain PD5205 chromosome 1	2	3547346-3548094	1	CRT	no		cas3,WYL,DEDDh,DinG,csa3,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	Orphan	TNCTGCCNTANCCGGCGNTCAGNNNGCTG	29	2	2	3547375-3547393|3547903-3547921	NZ_LT853885.1_965789-965771|NZ_LT853885.1_504543-504561	NA	15	15	Orphan	cas3,WYL,DEDDh,DinG,csa3,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	NA|82aa|up_9|NZ_LT853885.1_3537215_3537461_-,NA|168aa|up_3|NZ_LT853885.1_3543293_3543797_-,NA|65aa|down_0|NZ_LT853885.1_3551667_3551862_+	NA|82aa|up_9|NZ_LT853885.1_3537215_3537461_-	NA	NA|269aa|up_8|NZ_LT853885.1_3537488_3538295_-	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|149aa|up_7|NZ_LT853885.1_3539287_3539734_+	PRK05395, PRK05395, type II 3-dehydroquinate dehydratase	NA|164aa|up_6|NZ_LT853885.1_3539831_3540323_+	PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein	NA|456aa|up_5|NZ_LT853885.1_3540781_3542149_+	PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase subunit; Validated	NA|307aa|up_4|NZ_LT853885.1_3542361_3543282_+	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|168aa|up_3|NZ_LT853885.1_3543293_3543797_-	NA	NA|126aa|up_2|NZ_LT853885.1_3543946_3544324_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|377aa|up_1|NZ_LT853885.1_3544747_3545878_+	pfam11906, DUF3426, Protein of unknown function (DUF3426)	NA|91aa|up_0|NZ_LT853885.1_3545994_3546267_+	PRK00430, fis, DNA-binding transcriptional regulator Fis	NA|65aa|down_0|NZ_LT853885.1_3551667_3551862_+	NA	NA|528aa|down_1|NZ_LT853885.1_3552399_3553983_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|432aa|down_2|NZ_LT853885.1_3554103_3555399_+	PRK00885, PRK00885, phosphoribosylamine--glycine ligase; Provisional	NA|739aa|down_3|NZ_LT853885.1_3555616_3557833_+	TIGR01667, Uncharacterized_protein_HI_1680, integral membrane protein, YccS/YhfK family	NA|222aa|down_4|NZ_LT853885.1_3557950_3558616_-	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|641aa|down_5|NZ_LT853885.1_3561039_3562962_+	PRK06814, PRK06814, acyl-[ACP]--phospholipid O-acyltransferase	NA|115aa|down_6|NZ_LT853885.1_3563209_3563554_+	pfam04505, CD225, Interferon-induced transmembrane protein	NA|137aa|down_7|NZ_LT853885.1_3563553_3563964_+	pfam10825, DUF2752, Protein of unknown function (DUF2752)	NA|297aa|down_8|NZ_LT853885.1_3564017_3564908_-	COG3725, AmpE, Membrane protein required for beta-lactamase induction [Defense mechanisms]	NA|297aa|down_9|NZ_LT853885.1_3564981_3565872_-	COG2816, NPY1, NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
GCF_900183995.1_PD5205.1	NZ_LT853885	Xanthomonas fragariae strain PD5205 chromosome 1	3	3549648-3550481	2	CRT	no		cas3,WYL,DEDDh,DinG,csa3,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	Orphan	NGTGCTGCCNTAGCCGGC	18	3	6	3549666-3549695|3549666-3549695|3549714-3549743|3549714-3549743|3550050-3550079|3550050-3550079	NZ_LT853885.1_3549378-3549407|NZ_LT853885.1_3549522-3549551|NZ_LT853885.1_3549570-3549599|NZ_LT853885.1_3549426-3549455|NZ_LT853885.1_3548610-3548639|NZ_LT853885.1_3548754-3548783	NA	17	17	Orphan	cas3,WYL,DEDDh,DinG,csa3,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	NA|82aa|up_9|NZ_LT853885.1_3537215_3537461_-,NA|168aa|up_3|NZ_LT853885.1_3543293_3543797_-,NA|65aa|down_0|NZ_LT853885.1_3551667_3551862_+	NA|82aa|up_9|NZ_LT853885.1_3537215_3537461_-	NA	NA|269aa|up_8|NZ_LT853885.1_3537488_3538295_-	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|149aa|up_7|NZ_LT853885.1_3539287_3539734_+	PRK05395, PRK05395, type II 3-dehydroquinate dehydratase	NA|164aa|up_6|NZ_LT853885.1_3539831_3540323_+	PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein	NA|456aa|up_5|NZ_LT853885.1_3540781_3542149_+	PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase subunit; Validated	NA|307aa|up_4|NZ_LT853885.1_3542361_3543282_+	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|168aa|up_3|NZ_LT853885.1_3543293_3543797_-	NA	NA|126aa|up_2|NZ_LT853885.1_3543946_3544324_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|377aa|up_1|NZ_LT853885.1_3544747_3545878_+	pfam11906, DUF3426, Protein of unknown function (DUF3426)	NA|91aa|up_0|NZ_LT853885.1_3545994_3546267_+	PRK00430, fis, DNA-binding transcriptional regulator Fis	NA|65aa|down_0|NZ_LT853885.1_3551667_3551862_+	NA	NA|528aa|down_1|NZ_LT853885.1_3552399_3553983_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|432aa|down_2|NZ_LT853885.1_3554103_3555399_+	PRK00885, PRK00885, phosphoribosylamine--glycine ligase; Provisional	NA|739aa|down_3|NZ_LT853885.1_3555616_3557833_+	TIGR01667, Uncharacterized_protein_HI_1680, integral membrane protein, YccS/YhfK family	NA|222aa|down_4|NZ_LT853885.1_3557950_3558616_-	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|641aa|down_5|NZ_LT853885.1_3561039_3562962_+	PRK06814, PRK06814, acyl-[ACP]--phospholipid O-acyltransferase	NA|115aa|down_6|NZ_LT853885.1_3563209_3563554_+	pfam04505, CD225, Interferon-induced transmembrane protein	NA|137aa|down_7|NZ_LT853885.1_3563553_3563964_+	pfam10825, DUF2752, Protein of unknown function (DUF2752)	NA|297aa|down_8|NZ_LT853885.1_3564017_3564908_-	COG3725, AmpE, Membrane protein required for beta-lactamase induction [Defense mechanisms]	NA|297aa|down_9|NZ_LT853885.1_3564981_3565872_-	COG2816, NPY1, NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
GCF_900183995.1_PD5205.1	NZ_LT853885	Xanthomonas fragariae strain PD5205 chromosome 1	4	3634938-3637066	1,2,3	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	cas3,WYL,DEDDh,DinG,csa3,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	Type I-F	GTTCACTGCCGCGTAGGCAGCTCAGAAA,GTTCACTGCCGCGTAGGCAGCTCAGAAA,NNNNNNNNNGTTCACTGCCGCGTAGGCAGCTCAGAAA	28,28,37	2	2	3636107-3636138|3636947-3636978	NZ_LT853885.1_2119573-2119542|NZ_LT853885.1_2120356-2120325	I-F:I-F:I-F	35,35,35	35	TypeI-F	cas3,WYL,DEDDh,DinG,csa3,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	NA,NA|146aa|down_9|NZ_LT853885.1_3654204_3654642_-	NA|207aa|up_9|NZ_LT853885.1_3620400_3621021_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|388aa|up_8|NZ_LT853885.1_3621149_3622313_+	cd01156, IVD, Isovaleryl-CoA dehydrogenase	NA|537aa|up_7|NZ_LT853885.1_3622323_3623934_+	PLN02820, PLN02820, 3-methylcrotonyl-CoA carboxylase, beta chain	NA|675aa|up_6|NZ_LT853885.1_3624177_3626202_+	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	cas1|330aa|up_5|NZ_LT853885.1_3626382_3627372_+	cd09718, Cas1_I-F, CRISPR/Cas system-associated protein Cas1	cas3-cas2|1122aa|up_4|NZ_LT853885.1_3627368_3630734_+	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas8f|452aa|up_3|NZ_LT853885.1_3630812_3632168_+	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1)	cas5f|337aa|up_2|NZ_LT853885.1_3632164_3633175_+	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas7f|346aa|up_1|NZ_LT853885.1_3633197_3634235_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|189aa|up_0|NZ_LT853885.1_3634239_3634806_+	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	NA|1042aa|down_0|NZ_LT853885.1_3638637_3641763_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|356aa|down_1|NZ_LT853885.1_3641759_3642827_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|659aa|down_2|NZ_LT853885.1_3643089_3645066_-	PRK05506, PRK05506, bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional	NA|302aa|down_3|NZ_LT853885.1_3645065_3645971_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|616aa|down_4|NZ_LT853885.1_3646152_3648000_+	TIGR01931, Sulfite_reductase_flavoprotein_alpha-component, sulfite reductase [NADPH] flavoprotein, alpha-component	NA|569aa|down_5|NZ_LT853885.1_3648123_3649830_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|243aa|down_6|NZ_LT853885.1_3649826_3650555_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|484aa|down_7|NZ_LT853885.1_3650555_3652007_-	COG3182, PiuB, Uncharacterized iron-regulated membrane protein [Function unknown]	NA|668aa|down_8|NZ_LT853885.1_3652006_3654010_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|146aa|down_9|NZ_LT853885.1_3654204_3654642_-	NA
GCF_900183995.1_PD5205.1	NZ_LT853885	Xanthomonas fragariae strain PD5205 chromosome 1	5	3888267-3888474	2,3,4	PILER-CR,CRISPRCasFinder,CRT	no		cas3,WYL,DEDDh,DinG,csa3,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	Orphan	GTTCACTGCCGCGTAGGCAGCTCAGAAATAAC,GTTCACTGCCGCGTAGGCAGCTCAGAAA,GTTCACTGCCGCGTAGGCAGCTCAGAAAT	32,28,29	0	0	NA	NA	I-F:I-F:I-F	2,3,3	3	Orphan	cas3,WYL,DEDDh,DinG,csa3,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	NA|158aa|up_7|NZ_LT853885.1_3874822_3875296_+,NA|729aa|down_0|NZ_LT853885.1_3889368_3891555_+	NA|206aa|up_9|NZ_LT853885.1_3873102_3873720_-	cd06259, YdcF-like, YdcF-like	NA|320aa|up_8|NZ_LT853885.1_3873704_3874664_-	PLN02970, PLN02970, serine racemase	NA|158aa|up_7|NZ_LT853885.1_3874822_3875296_+	NA	NA|635aa|up_6|NZ_LT853885.1_3875876_3877781_+	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|287aa|up_5|NZ_LT853885.1_3879296_3880157_-	cd05145, RIO1_like, Catalytic domain of the atypical protein serine kinases, RIO1 and RIO3 kinases and similar proteins	NA|276aa|up_4|NZ_LT853885.1_3881134_3881962_+	PRK10906, PRK10906, DeoR/GlpR family transcriptional regulator	NA|504aa|up_3|NZ_LT853885.1_3882189_3883701_+	PRK12266, glpD, glycerol-3-phosphate dehydrogenase; Reviewed	NA|274aa|up_2|NZ_LT853885.1_3883879_3884701_+	COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]	NA|500aa|up_1|NZ_LT853885.1_3884842_3886342_+	PRK00047, glpK, glycerol kinase GlpK	NA|49aa|up_0|NZ_LT853885.1_3886887_3887034_-	cd02892, SQCY_1, Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold	NA|729aa|down_0|NZ_LT853885.1_3889368_3891555_+	NA	NA|723aa|down_1|NZ_LT853885.1_3891669_3893838_-	cd06456, M3A_DCP, Peptidase family M3, dipeptidyl carboxypeptidase (DCP)	NA|210aa|down_2|NZ_LT853885.1_3894411_3895041_-	cd07988, LPLAT_ABO13168-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ABO13168	NA|144aa|down_3|NZ_LT853885.1_3895043_3895475_-	PRK09256, PRK09256, aminoacyl-tRNA hydrolase	NA|181aa|down_4|NZ_LT853885.1_3895568_3896111_+	COG3184, COG3184, Uncharacterized protein conserved in bacteria [Function unknown]	NA|154aa|down_5|NZ_LT853885.1_3896653_3897115_+	pfam13899, Thioredoxin_7, Thioredoxin-like	NA|558aa|down_6|NZ_LT853885.1_3898827_3900501_-	PRK04750, ubiB, putative ubiquinone biosynthesis protein UbiB; Reviewed	NA|215aa|down_7|NZ_LT853885.1_3900497_3901142_-	COG3165, COG3165, Uncharacterized protein conserved in bacteria [Function unknown]	NA|53aa|down_8|NZ_LT853885.1_3901806_3901965_-	COG5487, COG5487, Small integral membrane protein [Function unknown]	NA|337aa|down_9|NZ_LT853885.1_3902030_3903041_-	cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid dehydrogenases (3b-HSD)-like, extended (e) SDRs
