assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900184875.1_Uniti	NZ_LT883142	Escherichia coli isolate 6666666.257727.embl chromosome IV	1	920529-920985	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		csa3,cse2gr11,cas5,cas6e,cas1,cas2,cas3,DEDDh,DinG,c2c9_V-U4,RT	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCGA,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,30,29	0	0	NA	NA	I-E:I-E:I-E	6,7,7	7	Orphan	cas3,csa3,cse2gr11,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	NA|47aa|up_1|NZ_LT883142.1_919238_919379_-,NA	NA|434aa|up_9|NZ_LT883142.1_909935_911237_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NZ_LT883142.1_911284_913519_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|NZ_LT883142.1_913596_913845_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|NZ_LT883142.1_913844_914180_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|NZ_LT883142.1_914250_915042_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NZ_LT883142.1_915269_916907_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NZ_LT883142.1_916994_918293_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|NZ_LT883142.1_918352_919225_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|NZ_LT883142.1_919238_919379_-	NA	NA|224aa|up_0|NZ_LT883142.1_919517_920189_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_LT883142.1_921622_923101_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_LT883142.1_923127_924405_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_LT883142.1_924723_925509_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_LT883142.1_925578_927033_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_4|NZ_LT883142.1_927054_928464_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_LT883142.1_928441_929221_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_LT883142.1_929217_930078_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_LT883142.1_930225_930801_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_LT883142.1_930817_931078_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_LT883142.1_931068_932340_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_900184875.1_Uniti	NZ_LT883142	Escherichia coli isolate 6666666.257727.embl chromosome IV	2	949758-950640	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cse2gr11,cas5,cas6e,cas1,cas2	csa3,cse2gr11,cas5,cas6e,cas1,cas2,cas3,DEDDh,DinG,c2c9_V-U4,RT	Type I-E	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	12,14,14	14	TypeI-E	cas3,csa3,cse2gr11,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	NA,NA	NA|571aa|up_9|NZ_LT883142.1_934897_936610_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_8|NZ_LT883142.1_936684_937419_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|128aa|up_7|NZ_LT883142.1_938843_939227_+	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|116aa|up_6|NZ_LT883142.1_939223_939571_+	pfam05717, TnpB_IS66, IS66 Orf2 like protein	NA|512aa|up_5|NZ_LT883142.1_939620_941156_+	pfam03050, DDE_Tnp_IS66, Transposase IS66 family	cse2gr11|161aa|up_4|NZ_LT883142.1_945581_946064_+	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas5|225aa|up_3|NZ_LT883142.1_947172_947847_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas6e|200aa|up_2|NZ_LT883142.1_947833_948433_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|306aa|up_1|NZ_LT883142.1_948448_949366_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|95aa|up_0|NZ_LT883142.1_949367_949652_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_LT883142.1_950660_951698_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_LT883142.1_951949_952858_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_LT883142.1_952859_954287_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_LT883142.1_954286_954892_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_LT883142.1_954941_955265_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_LT883142.1_955458_955770_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_LT883142.1_955788_956499_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_LT883142.1_956498_956978_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_LT883142.1_956974_958024_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_LT883142.1_958004_958766_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_900184875.1_Uniti	NZ_LT883142	Escherichia coli isolate 6666666.257727.embl chromosome IV	3	1477589-1477706	3	CRISPRCasFinder	no		csa3,cse2gr11,cas5,cas6e,cas1,cas2,cas3,DEDDh,DinG,c2c9_V-U4,RT	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cse2gr11,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	NA,NA	NA|268aa|up_9|NZ_LT883142.1_1466225_1467029_+	PRK10128, PRK10128, 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional	NA|301aa|up_8|NZ_LT883142.1_1467069_1467972_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_7|NZ_LT883142.1_1468164_1469355_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_6|NZ_LT883142.1_1469351_1470611_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_5|NZ_LT883142.1_1470600_1472229_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_4|NZ_LT883142.1_1472501_1473860_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_3|NZ_LT883142.1_1473864_1474941_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|217aa|up_2|NZ_LT883142.1_1475403_1476054_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_LT883142.1_1476107_1476362_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_LT883142.1_1476361_1477492_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_LT883142.1_1477725_1480011_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|NZ_LT883142.1_1480706_1484459_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_LT883142.1_1484586_1485309_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_LT883142.1_1485455_1488083_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NZ_LT883142.1_1488231_1489920_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_LT883142.1_1489916_1490540_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1465aa|down_6|NZ_LT883142.1_1490683_1495078_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_7|NZ_LT883142.1_1495078_1496728_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_8|NZ_LT883142.1_1496732_1497509_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_9|NZ_LT883142.1_1497582_1498767_-	PRK05790, PRK05790, putative acyltransferase; Provisional
GCF_900184875.1_Uniti	NZ_LT883142	Escherichia coli isolate 6666666.257727.embl chromosome IV	4	2141546-2141669	4	CRISPRCasFinder	no	DEDDh	csa3,cse2gr11,cas5,cas6e,cas1,cas2,cas3,DEDDh,DinG,c2c9_V-U4,RT	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cse2gr11,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	NA,NA|30aa|down_7|NZ_LT883142.1_2150565_2150655_+	NA|471aa|up_9|NZ_LT883142.1_2131000_2132413_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_LT883142.1_2132969_2133179_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_LT883142.1_2133633_2134260_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_LT883142.1_2134280_2136383_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_LT883142.1_2136395_2137034_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_LT883142.1_2137097_2137766_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_LT883142.1_2137762_2138548_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_LT883142.1_2138551_2139364_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_LT883142.1_2139375_2140980_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_LT883142.1_2141105_2141411_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_LT883142.1_2141983_2143240_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_LT883142.1_2143280_2144654_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_LT883142.1_2144868_2145510_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_LT883142.1_2145549_2146698_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_LT883142.1_2146988_2148200_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_LT883142.1_2148312_2149245_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_LT883142.1_2149241_2150267_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_LT883142.1_2150565_2150655_+	NA	NA|390aa|down_8|NZ_LT883142.1_2150820_2151990_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_LT883142.1_2152224_2152806_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_900184875.1_Uniti	NZ_LT883142	Escherichia coli isolate 6666666.257727.embl chromosome IV	5	2879452-2879543	5	CRISPRCasFinder	no		csa3,cse2gr11,cas5,cas6e,cas1,cas2,cas3,DEDDh,DinG,c2c9_V-U4,RT	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cse2gr11,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	NA|70aa|up_9|NZ_LT883142.1_2868527_2868737_-,NA	NA|70aa|up_9|NZ_LT883142.1_2868527_2868737_-	NA	NA|1321aa|up_8|NZ_LT883142.1_2868791_2872754_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_LT883142.1_2872793_2873432_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_LT883142.1_2873719_2874811_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_LT883142.1_2874810_2875503_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_LT883142.1_2875514_2875901_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_LT883142.1_2875908_2876709_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_LT883142.1_2876718_2877309_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_LT883142.1_2877319_2877814_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_LT883142.1_2877834_2879163_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_LT883142.1_2879966_2880563_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_LT883142.1_2880583_2880811_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_LT883142.1_2880848_2882090_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|419aa|down_3|NZ_LT883142.1_2882382_2883639_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_LT883142.1_2883899_2884820_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_LT883142.1_2884819_2885125_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_LT883142.1_2885217_2885817_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_LT883142.1_2885813_2888360_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_LT883142.1_2888359_2889532_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_LT883142.1_2889661_2890354_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_900184875.1_Uniti	NZ_LT883142	Escherichia coli isolate 6666666.257727.embl chromosome IV	6	3021122-3021327	6,3,3	CRISPRCasFinder,CRT,PILER-CR	no		csa3,cse2gr11,cas5,cas6e,cas1,cas2,cas3,DEDDh,DinG,c2c9_V-U4,RT	Orphan	TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAACG	28,28,29	0	0	NA	NA	I-F:I-F:I-F	3,3,2	3	Orphan	cas3,csa3,cse2gr11,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	NA,NA	NA|431aa|up_9|NZ_LT883142.1_3006129_3007422_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_8|NZ_LT883142.1_3007512_3008856_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_7|NZ_LT883142.1_3008866_3009478_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1369aa|up_6|NZ_LT883142.1_3009632_3013739_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|NZ_LT883142.1_3013873_3014368_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_4|NZ_LT883142.1_3014912_3015878_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|NZ_LT883142.1_3016000_3017767_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|NZ_LT883142.1_3017767_3019489_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|NZ_LT883142.1_3019530_3020235_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|NZ_LT883142.1_3020519_3020738_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|759aa|down_0|NZ_LT883142.1_3021537_3023814_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|NZ_LT883142.1_3023844_3024165_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_2|NZ_LT883142.1_3024487_3024712_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_3|NZ_LT883142.1_3024784_3026731_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_4|NZ_LT883142.1_3026727_3027843_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|319aa|down_5|NZ_LT883142.1_3027993_3028950_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_6|NZ_LT883142.1_3028946_3030605_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|232aa|down_7|NZ_LT883142.1_3031030_3031726_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|300aa|down_8|NZ_LT883142.1_3032220_3033120_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|551aa|down_9|NZ_LT883142.1_3033263_3034916_+	PRK05290, PRK05290, hybrid cluster protein; Provisional
GCF_900184875.1_Uniti	NZ_LT883142	Escherichia coli isolate 6666666.257727.embl chromosome IV	7	3174640-3174784	7	CRISPRCasFinder	no		csa3,cse2gr11,cas5,cas6e,cas1,cas2,cas3,DEDDh,DinG,c2c9_V-U4,RT	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cse2gr11,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	NA,NA	NA|330aa|up_9|NZ_LT883142.1_3162538_3163528_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|303aa|up_8|NZ_LT883142.1_3163924_3164833_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|674aa|up_7|NZ_LT883142.1_3165024_3167046_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|226aa|up_6|NZ_LT883142.1_3167624_3168302_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|252aa|up_5|NZ_LT883142.1_3168294_3169050_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|385aa|up_4|NZ_LT883142.1_3169036_3170191_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|347aa|up_3|NZ_LT883142.1_3170187_3171228_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|430aa|up_2|NZ_LT883142.1_3171314_3172604_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|up_1|NZ_LT883142.1_3172662_3173139_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|428aa|up_0|NZ_LT883142.1_3173290_3174574_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_LT883142.1_3174807_3177069_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_LT883142.1_3177251_3178685_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_LT883142.1_3178760_3179813_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_LT883142.1_3179996_3180950_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_LT883142.1_3180990_3181986_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_LT883142.1_3182140_3182959_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_LT883142.1_3182959_3184018_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_LT883142.1_3184020_3184710_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_LT883142.1_3184709_3185483_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NZ_LT883142.1_3185649_3185799_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_900184875.1_Uniti	NZ_LT883142	Escherichia coli isolate 6666666.257727.embl chromosome IV	8	3422638-3422734	8	CRISPRCasFinder	no		csa3,cse2gr11,cas5,cas6e,cas1,cas2,cas3,DEDDh,DinG,c2c9_V-U4,RT	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cse2gr11,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	NA,NA	NA|231aa|up_9|NZ_LT883142.1_3414433_3415126_-	PRK15195, PRK15195, molecular chaperone FimC	NA|181aa|up_8|NZ_LT883142.1_3415345_3415888_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|289aa|up_7|NZ_LT883142.1_3416358_3417225_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|NZ_LT883142.1_3417226_3417439_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|NZ_LT883142.1_3417546_3418068_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|NZ_LT883142.1_3418103_3419489_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|NZ_LT883142.1_3419662_3420157_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|NZ_LT883142.1_3420159_3420882_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|NZ_LT883142.1_3420999_3421509_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|NZ_LT883142.1_3421505_3422573_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|NZ_LT883142.1_3422767_3423661_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|NZ_LT883142.1_3423657_3424473_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|NZ_LT883142.1_3424483_3425743_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|NZ_LT883142.1_3425752_3427420_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|NZ_LT883142.1_3427736_3428786_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|412aa|down_5|NZ_LT883142.1_3428807_3430043_+	TIGR03176, AllC, allantoate amidohydrolase	NA|262aa|down_6|NZ_LT883142.1_3430053_3430839_+	COG3257, GlxB, Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]	NA|382aa|down_7|NZ_LT883142.1_3431066_3432212_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_8|NZ_LT883142.1_3432233_3433535_-	PRK11412, PRK11412, uracil/xanthine transporter	NA|454aa|down_9|NZ_LT883142.1_3433591_3434953_-	PRK08044, PRK08044, allantoinase AllB
GCF_900184875.1_Uniti	NZ_LT883142	Escherichia coli isolate 6666666.257727.embl chromosome IV	9	3557713-3557857	9	CRISPRCasFinder	no		csa3,cse2gr11,cas5,cas6e,cas1,cas2,cas3,DEDDh,DinG,c2c9_V-U4,RT	Orphan	TTTTGTAGGCCTGATAAGACGCGACAAGCGTCGCATCAGGCAT	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cse2gr11,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	NA,NA|28aa|down_4|NZ_LT883142.1_3562347_3562431_-	NA|357aa|up_9|NZ_LT883142.1_3542854_3543925_-	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|194aa|up_8|NZ_LT883142.1_3544017_3544599_+	PRK10045, PRK10045, ACP phosphodiesterase	NA|606aa|up_7|NZ_LT883142.1_3544603_3546421_-	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|458aa|up_6|NZ_LT883142.1_3546576_3547950_-	PRK10580, proY, putative proline-specific permease; Provisional	NA|440aa|up_5|NZ_LT883142.1_3548025_3549345_-	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|432aa|up_4|NZ_LT883142.1_3549751_3551047_-	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|230aa|up_3|NZ_LT883142.1_3551104_3551794_-	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|401aa|up_2|NZ_LT883142.1_3551983_3553186_+	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|1048aa|up_1|NZ_LT883142.1_3553182_3556326_+	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|395aa|up_0|NZ_LT883142.1_3556451_3557636_+	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|512aa|down_0|NZ_LT883142.1_3558225_3559761_-	pfam03050, DDE_Tnp_IS66, Transposase IS66 family	NA|116aa|down_1|NZ_LT883142.1_3559810_3560158_-	pfam05717, TnpB_IS66, IS66 Orf2 like protein	NA|128aa|down_2|NZ_LT883142.1_3560154_3560538_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|304aa|down_3|NZ_LT883142.1_3561358_3562270_+	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|28aa|down_4|NZ_LT883142.1_3562347_3562431_-	NA	NA|95aa|down_5|NZ_LT883142.1_3562917_3563202_-	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|226aa|down_6|NZ_LT883142.1_3563273_3563951_-	PRK10481, PRK10481, hypothetical protein; Provisional	NA|64aa|down_7|NZ_LT883142.1_3564208_3564400_-	PRK10380, PRK10380, hypothetical protein; Provisional	NA|175aa|down_8|NZ_LT883142.1_3564449_3564974_-	PRK03731, aroL, shikimate kinase AroL	NA|155aa|down_9|NZ_LT883142.1_3565150_3565615_-	PRK00124, PRK00124, YaiI/YqxD family protein
GCF_900184875.1_Uniti	NZ_LT883142	Escherichia coli isolate 6666666.257727.embl chromosome IV	10	3699419-3699515	10	CRISPRCasFinder	no		csa3,cse2gr11,cas5,cas6e,cas1,cas2,cas3,DEDDh,DinG,c2c9_V-U4,RT	Orphan	GCCAGCGTCGCATCAGGCATCCGCGCA	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cse2gr11,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	NA,NA	NA|415aa|up_9|NZ_LT883142.1_3689961_3691206_-	PRK05077, frsA, esterase FrsA	NA|153aa|up_8|NZ_LT883142.1_3691297_3691756_-	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated	NA|486aa|up_7|NZ_LT883142.1_3692016_3693474_+	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional	NA|89aa|up_6|NZ_LT883142.1_3693999_3694266_-	PRK09588, PRK09588, hypothetical protein; Reviewed	NA|151aa|up_5|NZ_LT883142.1_3694499_3694952_-	PRK09831, PRK09831, GNAT family N-acetyltransferase	NA|133aa|up_4|NZ_LT883142.1_3694961_3695360_-	PRK09885, PRK09885, type II toxin-antitoxin system YafO family toxin	NA|98aa|up_3|NZ_LT883142.1_3695362_3695656_-	PRK09778, PRK09778, type I toxin-antitoxin system antitoxin YafN	NA|352aa|up_2|NZ_LT883142.1_3695707_3696763_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|262aa|up_1|NZ_LT883142.1_3696833_3697619_-	PRK06778, PRK06778, hypothetical protein; Validated	NA|580aa|up_0|NZ_LT883142.1_3697563_3699303_+	COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|150aa|down_0|NZ_LT883142.1_3699566_3700016_-	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|258aa|down_1|NZ_LT883142.1_3700191_3700965_-	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]	NA|87aa|down_2|NZ_LT883142.1_3701150_3701411_+	COG3077, RelB, DNA-damage-inducible protein J [DNA replication, recombination, and repair]	NA|93aa|down_3|NZ_LT883142.1_3701413_3701692_+	COG3041, COG3041, Uncharacterized protein conserved in bacteria [Function unknown]	NA|247aa|down_4|NZ_LT883142.1_3701847_3702588_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|256aa|down_5|NZ_LT883142.1_3702558_3703326_-	pfam13230, GATase_4, Glutamine amidotransferases class-II	NA|193aa|down_6|NZ_LT883142.1_3703531_3704110_-	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase	NA|815aa|down_7|NZ_LT883142.1_3704349_3706794_+	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed	NA|158aa|down_8|NZ_LT883142.1_3706836_3707310_-	PRK09993, PRK09993, C-lysozyme inhibitor; Provisional	NA|257aa|down_9|NZ_LT883142.1_3707463_3708234_+	PRK10438, PRK10438, C-N hydrolase family amidase; Provisional
GCF_900184875.1_Uniti	NZ_LT883142	Escherichia coli isolate 6666666.257727.embl chromosome IV	11	3942142-3942283	11	CRISPRCasFinder	no		csa3,cse2gr11,cas5,cas6e,cas1,cas2,cas3,DEDDh,DinG,c2c9_V-U4,RT	Orphan	GCTGGAGAGCAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGA	52	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cse2gr11,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	NA,NA	NA|96aa|up_9|NZ_LT883142.1_3931132_3931420_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_8|NZ_LT883142.1_3931416_3932703_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_7|NZ_LT883142.1_3932753_3933695_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_6|NZ_LT883142.1_3933709_3934480_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|up_5|NZ_LT883142.1_3934953_3936468_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|up_4|NZ_LT883142.1_3936498_3937641_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|up_3|NZ_LT883142.1_3937769_3938987_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|up_2|NZ_LT883142.1_3939060_3940614_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|up_1|NZ_LT883142.1_3940722_3941508_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|up_0|NZ_LT883142.1_3941513_3942104_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_0|NZ_LT883142.1_3942312_3942708_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_1|NZ_LT883142.1_3942969_3946191_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_2|NZ_LT883142.1_3946208_3947357_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_3|NZ_LT883142.1_3947812_3948634_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]	NA|305aa|down_4|NZ_LT883142.1_3948800_3949715_-	PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional	NA|317aa|down_5|NZ_LT883142.1_3949780_3950731_-	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|150aa|down_6|NZ_LT883142.1_3950732_3951182_-	PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional	NA|165aa|down_7|NZ_LT883142.1_3951306_3951801_-	PRK00376, lspA, lipoprotein signal peptidase	NA|939aa|down_8|NZ_LT883142.1_3951800_3954617_-	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|314aa|down_9|NZ_LT883142.1_3954659_3955601_-	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase
