The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LT906474	Escherichia coli strain NCTC122 chromosome 1	4625968	1056380	1063520	4625968		Escherichia_phage(83.33%)	6	NA	NA
WP_001278994.1|1056380_1057019_-	aldolase	NA	A0A077SK32	Escherichia_phage	75.0	1.4e-82
WP_000590403.1|1057015_1058278_-	four-carbon acid sugar kinase family protein	NA	A0A077SLJ7	Escherichia_phage	61.4	1.7e-135
WP_000847985.1|1058274_1059183_-	NAD(P)-dependent oxidoreductase	NA	A0A077SLF7	Escherichia_phage	76.9	3.0e-118
WP_001300386.1|1059378_1060146_+	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	56.3	7.4e-70
WP_001141322.1|1060196_1060853_-	protein-serine/threonine phosphatase	NA	A0A222YWF0	Escherichia_phage	46.3	6.2e-49
WP_001272898.1|1060958_1063520_-	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	20.6	1.3e-30
>prophage 2
NZ_LT906474	Escherichia coli strain NCTC122 chromosome 1	4625968	1680714	1690156	4625968		Enterobacteria_phage(85.71%)	10	NA	NA
WP_000569315.1|1680714_1681641_+	glycine betaine ABC transporter ATP binding protein YehX	NA	G3M9Y6	Bacillus_virus	30.8	2.8e-23
WP_000783120.1|1681645_1682377_+	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA	NA
WP_001216963.1|1682357_1682465_-	protein YohO	NA	NA	NA	NA	NA
WP_001240401.1|1682524_1683256_-	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	99.5	9.7e-112
WP_001295431.1|1683477_1685163_+	two-component regulatory system sensor histidine kinase BtsS	NA	Q9EYF3	Enterobacteria_phage	99.6	2.5e-304
WP_000598641.1|1685159_1685879_+	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_001295430.1|1685925_1686396_+	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	100.0	1.8e-82
WP_001373589.1|1686436_1686898_-	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	98.7	1.6e-75
WP_001423058.1|1687022_1689023_-	SWIM zinc finger family protein	NA	Q9EYF6	Enterobacteria_phage	96.6	0.0e+00
WP_001333512.1|1689019_1690156_-	VWA domain-containing protein	NA	Q9EYF7	Enterobacteria_phage	97.7	1.9e-162
>prophage 3
NZ_LT906474	Escherichia coli strain NCTC122 chromosome 1	4625968	1784986	1791289	4625968		Enterobacteria_phage(50.0%)	6	NA	NA
WP_081508806.1|1784986_1786381_+	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	33.0	8.3e-19
WP_081508807.1|1786555_1787449_+	UTP--glucose-1-phosphate uridylyltransferase GalF	NA	A0A127AW70	Bacillus_phage	42.0	1.3e-46
WP_081508808.1|1787821_1788907_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	54.2	2.0e-100
WP_021552351.1|1788906_1789806_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	35.6	3.0e-30
WP_024046428.1|1789863_1790739_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	64.5	3.0e-107
WP_081508809.1|1790746_1791289_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	56.4	2.4e-51
>prophage 4
NZ_LT906474	Escherichia coli strain NCTC122 chromosome 1	4625968	2240295	2287907	4625968	protease,transposase,lysis,tail	Enterobacteria_phage(28.12%)	63	NA	NA
WP_001260865.1|2240295_2241117_-|protease	serine protease	protease	NA	NA	NA	NA
WP_000233090.1|2241216_2241300_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000743957.1|2241392_2241728_-	acid shock protein	NA	NA	NA	NA	NA
WP_000091840.1|2242124_2243378_-	MFS transporter	NA	NA	NA	NA	NA
WP_001019525.1|2243484_2244378_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000225262.1|2244512_2245733_+	DNA-binding transcriptional repressor Mlc	NA	NA	NA	NA	NA
WP_000919231.1|2245857_2246553_+	ATP-dependent dethiobiotin synthetase BioD	NA	NA	NA	NA	NA
WP_001315626.1|2246505_2247798_-	voltage-gated ClC-type chloride channel ClcB	NA	NA	NA	NA	NA
WP_000148710.1|2247956_2248571_-	Tat proofreading chaperone DmsD	NA	A0A077SLS7	Escherichia_phage	36.3	8.7e-29
WP_000526503.1|2248613_2249468_-	dimethyl sulfoxide reductase anchor subunit	NA	NA	NA	NA	NA
WP_000213028.1|2249469_2250087_-	dimethylsulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	59.6	9.5e-76
WP_001340362.1|2250097_2252521_-	dimethyl sulfoxide reductase subunit A	NA	A0A077SK27	Escherichia_phage	48.6	1.7e-208
WP_000041675.1|2252581_2255008_-	dimethyl sulfoxide reductase subunit A	NA	A0A077SK27	Escherichia_phage	49.2	7.7e-214
WP_001300836.1|2255206_2255512_-	DUF1161 domain-containing protein	NA	NA	NA	NA	NA
WP_001321287.1|2255619_2256330_+	YnfC family lipoprotein	NA	NA	NA	NA	NA
WP_001138581.1|2256332_2256893_-	spermidine N1-acetyltransferase	NA	NA	NA	NA	NA
WP_000705211.1|2256927_2257269_-	DUF1283 family protein	NA	NA	NA	NA	NA
WP_000598292.1|2257403_2257730_+	YnfA family protein	NA	A0A218MNG8	uncultured_virus	55.6	9.9e-24
WP_001295394.1|2257935_2259150_+	starvation-sensing protein RspA	NA	Q6A202	Oenococcus_phage	29.0	1.4e-46
WP_000836066.1|2259161_2260181_+	Zn-dependent oxidoreductase	NA	E3SJ82	Synechococcus_phage	26.2	4.3e-17
WP_001389342.1|2260238_2260367_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876986.1|2260368_2261649_-	DUF3596 domain-containing protein	NA	B6DZ48	Enterobacteria_phage	62.6	1.7e-156
WP_000005552.1|2261683_2261935_-	excisionase family protein	NA	S4TND0	Salmonella_phage	50.0	2.2e-15
WP_081508834.1|2262007_2264479_-	exonuclease	NA	A0A192Y6E0	Salmonella_phage	56.7	8.5e-59
WP_001083297.1|2264571_2264763_-|lysis	lysis protein YdfD	lysis	NA	NA	NA	NA
WP_000854559.1|2264759_2264948_-	cell division inhibition protein DicB	NA	NA	NA	NA	NA
WP_001329848.1|2265347_2265512_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001171942.1|2265515_2265734_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000379575.1|2265893_2266049_-	DUF1391 family protein	NA	M4QQ57	Salicola_phage	53.2	3.0e-07
WP_000448564.1|2266215_2266623_-	DNA-binding transcriptional dual regulator DicA	NA	K7PM82	Enterobacteria_phage	54.7	4.4e-13
WP_000920568.1|2266706_2266937_+	dicB transcriptional regulator DicC	NA	NA	NA	NA	NA
WP_085950818.1|2268442_2269563_-|transposase	IS3-like element ISSen4 family transposase	transposase	S5WIU1	Leptospira_phage	42.8	1.7e-51
WP_000589005.1|2269841_2271155_+|transposase	ISNCY family transposase	transposase	NA	NA	NA	NA
WP_001301033.1|2271591_2271924_-	protein FlxA	NA	NA	NA	NA	NA
WP_001326990.1|2272126_2272432_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000534858.1|2272456_2272696_+	type II toxin-antitoxin system antitoxin RelB	NA	A0A2H4JBG1	uncultured_Caudovirales_phage	54.4	1.6e-18
WP_047402633.1|2272695_2272983_+	type II toxin-antitoxin system mRNA interferase RelE	NA	A0A2H4JBF4	uncultured_Caudovirales_phage	66.0	1.8e-29
WP_000813254.1|2273054_2273210_+	type I toxin-antitoxin system toxin HokD	NA	A0A0U2QV81	Escherichia_phage	96.1	1.5e-17
WP_000980994.1|2273426_2273678_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012304870.1|2273744_2274023_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001265199.1|2274024_2275074_+	DUF968 domain-containing protein	NA	A0A291AWV9	Escherichia_phage	57.0	2.8e-112
WP_001047135.1|2275087_2275840_+	antitermination protein	NA	A0A192Y5X6	Salmonella_phage	92.8	7.1e-134
WP_120795389.1|2276117_2276207_-	Qin prophage; protein YnfS	NA	NA	NA	NA	NA
WP_000087756.1|2276261_2276474_-	cold shock-like protein CspF	NA	NA	NA	NA	NA
WP_000066484.1|2276774_2276990_+	cold shock-like protein CspB	NA	A0A1W6JNX5	Morganella_phage	76.5	3.4e-25
WP_000839590.1|2277743_2277959_+|lysis	phage lysis protein EssD	lysis	A5LH82	Enterobacteria_phage	94.4	1.1e-31
WP_000189916.1|2277963_2278275_+	YdfR family protein	NA	K7PGU6	Enterobacteria_phage	64.6	2.0e-26
WP_047402632.1|2278271_2278805_+	lysozyme	NA	K7PLY1	Enterobacteria_phage	92.7	1.4e-96
WP_001071769.1|2278801_2279299_+	DUF2514 domain-containing protein	NA	A0A291LBG9	Klebsiella_phage	29.5	2.9e-06
WP_000066495.1|2279661_2279874_+	cold shock protein CspI	NA	A0A1W6JNX5	Morganella_phage	74.3	1.2e-22
WP_071524604.1|2279884_2280073_+	cold-shock protein	NA	NA	NA	NA	NA
WP_120795388.1|2280075_2280141_+	Qin prophage; protein YnfR	NA	NA	NA	NA	NA
WP_001309517.1|2280220_2280376_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001019606.1|2280547_2280721_+	addiction module toxin, GnsA/GnsB family	NA	NA	NA	NA	NA
WP_000373090.1|2280872_2281283_-	DUF1398 domain-containing protein	NA	C6ZCX4	Enterobacteria_phage	79.4	2.5e-56
WP_001301001.1|2281340_2281514_-	YlcI/YnfO family protein	NA	A0A0K2FIR8	Escherichia_phage	76.7	1.9e-10
WP_081508886.1|2281512_2282475_+|tail	tail fiber protein	tail	K7PHC9	Enterobacteria_phage	72.7	4.5e-40
WP_000885611.1|2282474_2283050_+|tail	tail fiber assembly protein	tail	K7PMH7	Enterobacteria_phage	95.3	6.5e-103
WP_000078177.1|2283147_2283738_-	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	38.8	1.6e-24
WP_000836768.1|2284054_2284288_-	cold shock protein YdfK	NA	A0A192Y6D5	Salmonella_phage	88.3	1.1e-32
WP_120795384.1|2284356_2284470_-	Rac prophage; protein YnaM	NA	A0A1C9IHU6	Salmonella_phage	80.6	8.4e-07
WP_047402629.1|2285074_2286358_+	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_000527809.1|2286446_2287907_+	mannitol dehydrogenase family protein	NA	H8ZJP8	Ostreococcus_tauri_virus	29.6	1.5e-42
>prophage 5
NZ_LT906474	Escherichia coli strain NCTC122 chromosome 1	4625968	3539472	3619413	4625968	holin,transposase	Acinetobacter_phage(16.67%)	59	NA	NA
WP_000131044.1|3539472_3541506_-|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	27.4	3.4e-21
WP_001335745.1|3541634_3542222_+	transcriptional regulator BetI	NA	NA	NA	NA	NA
WP_000089113.1|3542235_3543708_+	betaine-aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_001159094.1|3543721_3545392_+|holin	choline dehydrogenase	holin	A0A1V0S9M4	Catovirus	31.2	4.7e-61
WP_047402619.1|3545604_3546273_+	membrane protein	NA	NA	NA	NA	NA
WP_000370307.1|3546515_3547211_-	lactate utilization protein C	NA	NA	NA	NA	NA
WP_000023927.1|3547203_3548631_-	iron-sulfur cluster-binding protein	NA	NA	NA	NA	NA
WP_001102100.1|3548641_3549361_-	(Fe-S)-binding protein	NA	NA	NA	NA	NA
WP_000339601.1|3549887_3550742_-	DNA-binding transcriptional regulator RclR	NA	NA	NA	NA	NA
WP_047402620.1|3550967_3552293_+	pyridine nucleotide-disulfide oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	47.6	2.5e-113
WP_000474077.1|3552401_3552638_+	DUF1471 domain-containing protein	NA	NA	NA	NA	NA
WP_001306921.1|3552649_3553243_+	reactive chlorine species resistance protein RclC	NA	NA	NA	NA	NA
WP_047403025.1|3553832_3554684_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_047403026.1|3554823_3559080_-	intimin-like adhesin FdeC	NA	NA	NA	NA	NA
WP_000662258.1|3560194_3560296_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000803998.1|3560659_3560923_+	type B 50S ribosomal protein L31	NA	NA	NA	NA	NA
WP_000866436.1|3560922_3561063_+	50S ribosomal protein L36	NA	NA	NA	NA	NA
WP_001147279.1|3561097_3561325_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001301257.1|3562148_3562691_+	ECP biosynthesis operon DNA-binding transcriptional regulator EcpR	NA	NA	NA	NA	NA
WP_000730972.1|3562765_3563353_+	common pilus major fimbrillin subunit EcpA	NA	NA	NA	NA	NA
WP_047403028.1|3563410_3564079_+	fimbrial chaperone EcpB	NA	NA	NA	NA	NA
WP_047403030.1|3564104_3566630_+	fimbrial usher EcpC	NA	NA	NA	NA	NA
WP_001310578.1|3566619_3568263_+	fimbrial adhesin EcpD	NA	NA	NA	NA	NA
WP_001301243.1|3568231_3568942_+	fimbrial chaperone EcpE	NA	NA	NA	NA	NA
WP_001303809.1|3569254_3569584_+	YkgJ family cysteine cluster protein	NA	NA	NA	NA	NA
WP_001019920.1|3569831_3570446_-	YagU family protein	NA	NA	NA	NA	NA
WP_000070699.1|3570863_3571553_+	aldehyde dehydrogenase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_032293878.1|3571549_3572506_+	aldehyde oxidoreductase FAD-binding subunit PaoB	NA	NA	NA	NA	NA
WP_000667031.1|3572502_3574701_+	aldehyde oxidoreductase molybdenum-binding subunit PaoC	NA	A0A0P0I429	Acinetobacter_phage	25.8	1.1e-38
WP_000121328.1|3574710_3575667_+	molybdenum cofactor insertion chaperone PaoD	NA	NA	NA	NA	NA
WP_047403032.1|3575846_3576974_-	MFS transporter	NA	NA	NA	NA	NA
WP_122990176.1|3577115_3578174_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001119037.1|3578438_3579323_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_032206693.1|3581596_3583105_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	31.8	3.6e-44
WP_081508859.1|3584051_3584774_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_000687182.1|3584872_3585772_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_047085429.1|3586168_3587098_-	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA	NA
WP_172808160.1|3587084_3587867_-	type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein	NA	NA	NA	NA	NA
WP_085947598.1|3589880_3591042_+|transposase	IS3-like element IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	40.6	4.0e-51
WP_001281825.1|3592504_3593509_+	ornithine carbamoyltransferase	NA	NA	NA	NA	NA
WP_001121657.1|3593647_3594406_+	DNA-binding transcriptional repressor XynR	NA	NA	NA	NA	NA
WP_000406872.1|3594410_3596021_-	glycoside hydrolase family 43 protein	NA	NA	NA	NA	NA
WP_000192863.1|3596032_3597415_-	MFS transporter	NA	NA	NA	NA	NA
WP_000151261.1|3597641_3599609_-	xylonate dehydratase YagF	NA	NA	NA	NA	NA
WP_001136613.1|3599623_3600532_-	2-keto-3-deoxygluconate aldolase	NA	NA	NA	NA	NA
WP_010723086.1|3600826_3601981_+|transposase	IS481-like element ISEc19 family transposase	transposase	NA	NA	NA	NA
WP_001030800.1|3602074_3602425_+	type IV toxin-antitoxin system antitoxin YagB	NA	NA	NA	NA	NA
WP_000015532.1|3602447_3602786_+|transposase	transposase	transposase	U5P4I9	Shigella_phage	91.2	2.7e-32
WP_000192349.1|3604007_3605054_+	ferric ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	37.7	1.5e-33
WP_000081352.1|3605162_3606095_-	homocysteine S-methyltransferase	NA	NA	NA	NA	NA
WP_001373486.1|3606081_3607485_-	S-methylmethionine permease	NA	NA	NA	NA	NA
WP_000213416.1|3607759_3608971_-	3-(3-hydroxy-phenyl)propionate transporter MhpT	NA	NA	NA	NA	NA
WP_081508861.1|3609040_3610054_-	4-hydroxy-2-oxovalerate aldolase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	31.1	5.4e-44
WP_000044265.1|3610050_3611001_-	acetaldehyde dehydrogenase (acetylating)	NA	E5EQ71	Micromonas_sp._RCC1109_virus	36.0	5.3e-33
WP_081508862.1|3610997_3611807_-	2-keto-4-pentenoate hydratase	NA	NA	NA	NA	NA
WP_081508863.1|3611816_3612683_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_000543447.1|3612711_3613656_-	3-carboxyethylcatechol 2,3-dioxygenase	NA	NA	NA	NA	NA
WP_001189111.1|3616140_3617649_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	31.8	3.6e-44
WP_000342159.1|3618114_3619413_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	48.6	2.3e-47
>prophage 6
NZ_LT906474	Escherichia coli strain NCTC122 chromosome 1	4625968	4011732	4019181	4625968	transposase	Pseudomonas_phage(16.67%)	6	NA	NA
WP_032206693.1|4011732_4013241_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	31.8	3.6e-44
WP_000747100.1|4013843_4014170_-|transposase	IS3 family transposase	transposase	Q716C1	Shigella_phage	97.7	8.3e-39
WP_000227281.1|4014270_4014843_+	hypothetical protein	NA	Q858R9	Enterobacteria_phage	69.0	2.2e-71
WP_000594911.1|4014891_4015716_-	hypothetical protein	NA	L7TR00	Rhizobium_phage	35.5	3.0e-16
WP_001299662.1|4016529_4017549_+	NADPH-dependent aldehyde reductase Ahr	NA	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	30.7	8.4e-45
WP_047402673.1|4017678_4019181_+	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	45.1	2.7e-84
