assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900186905.1_49923_G01	NZ_LT906474	Escherichia coli strain NCTC122 chromosome 1	1	1023960-1024354	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		c2c9_V-U4,cas3,csa3,PD-DExK,DEDDh,RT,DinG,WYL,Cas14u_CAS-V	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACC	28,29,28	0	0	NA	NA	I-E:I-E:I-E	6,6,6	6	Orphan	c2c9_V-U4,cas3,csa3,PD-DExK,DEDDh,RT,DinG,WYL,Cas14u_CAS-V	NA|47aa|up_1|NZ_LT906474.1_1022669_1022810_-,NA	NA|434aa|up_9|NZ_LT906474.1_1013366_1014668_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NZ_LT906474.1_1014715_1016950_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|NZ_LT906474.1_1017027_1017276_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|NZ_LT906474.1_1017275_1017611_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|NZ_LT906474.1_1017681_1018473_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NZ_LT906474.1_1018700_1020338_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NZ_LT906474.1_1020425_1021724_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|NZ_LT906474.1_1021783_1022656_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|NZ_LT906474.1_1022669_1022810_-	NA	NA|224aa|up_0|NZ_LT906474.1_1022948_1023620_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_LT906474.1_1024992_1026471_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_LT906474.1_1026497_1027775_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_LT906474.1_1028093_1028879_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_LT906474.1_1028948_1030403_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_4|NZ_LT906474.1_1030424_1031834_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_LT906474.1_1031811_1032591_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_LT906474.1_1032587_1033448_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_LT906474.1_1033595_1034171_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_LT906474.1_1034187_1034448_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_LT906474.1_1034438_1035710_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_900186905.1_49923_G01	NZ_LT906474	Escherichia coli strain NCTC122 chromosome 1	2	1042588-1042921	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no		c2c9_V-U4,cas3,csa3,PD-DExK,DEDDh,RT,DinG,WYL,Cas14u_CAS-V	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	4,5,5	5	Orphan	c2c9_V-U4,cas3,csa3,PD-DExK,DEDDh,RT,DinG,WYL,Cas14u_CAS-V	NA,NA	NA|287aa|up_9|NZ_LT906474.1_1032587_1033448_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|up_8|NZ_LT906474.1_1033595_1034171_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|up_7|NZ_LT906474.1_1034187_1034448_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|up_6|NZ_LT906474.1_1034438_1035710_-	PRK10015, PRK10015, oxidoreductase; Provisional	NA|121aa|up_5|NZ_LT906474.1_1035787_1036150_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|up_4|NZ_LT906474.1_1036468_1038268_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_3|NZ_LT906474.1_1038267_1039980_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_2|NZ_LT906474.1_1040053_1040788_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_1|NZ_LT906474.1_1041052_1041205_+	pfam01848, HOK_GEF, Hok/gef family	NA|371aa|up_0|NZ_LT906474.1_1041397_1042510_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|346aa|down_0|NZ_LT906474.1_1043003_1044041_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_LT906474.1_1044292_1045201_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_LT906474.1_1045202_1046630_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_LT906474.1_1046629_1047235_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_LT906474.1_1047284_1047608_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_LT906474.1_1047801_1048113_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_LT906474.1_1048131_1048842_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_LT906474.1_1048841_1049321_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_LT906474.1_1049317_1050367_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_LT906474.1_1050347_1051109_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_900186905.1_49923_G01	NZ_LT906474	Escherichia coli strain NCTC122 chromosome 1	3	1550658-1550775	3	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,PD-DExK,DEDDh,RT,DinG,WYL,Cas14u_CAS-V	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,PD-DExK,DEDDh,RT,DinG,WYL,Cas14u_CAS-V	NA,NA	NA|62aa|up_9|NZ_LT906474.1_1539943_1540129_-	PRK09956, PRK09956, ISNCY family transposase	NA|300aa|up_8|NZ_LT906474.1_1540141_1541041_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_7|NZ_LT906474.1_1541233_1542424_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_6|NZ_LT906474.1_1542420_1543680_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_5|NZ_LT906474.1_1543669_1545298_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_4|NZ_LT906474.1_1545570_1546929_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_3|NZ_LT906474.1_1546933_1548010_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|217aa|up_2|NZ_LT906474.1_1548472_1549123_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_LT906474.1_1549176_1549431_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_LT906474.1_1549430_1550561_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_LT906474.1_1550794_1553080_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|NZ_LT906474.1_1553775_1557528_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_LT906474.1_1557655_1558378_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_LT906474.1_1558524_1561152_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NZ_LT906474.1_1561300_1562989_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_LT906474.1_1562985_1563609_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1465aa|down_6|NZ_LT906474.1_1563752_1568147_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_7|NZ_LT906474.1_1568147_1569797_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_8|NZ_LT906474.1_1569801_1570578_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_9|NZ_LT906474.1_1570651_1571836_-	PRK05790, PRK05790, putative acyltransferase; Provisional
GCF_900186905.1_49923_G01	NZ_LT906474	Escherichia coli strain NCTC122 chromosome 1	4	2166439-2166562	4	CRISPRCasFinder	no	DEDDh	c2c9_V-U4,cas3,csa3,PD-DExK,DEDDh,RT,DinG,WYL,Cas14u_CAS-V	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,PD-DExK,DEDDh,RT,DinG,WYL,Cas14u_CAS-V	NA,NA|30aa|down_7|NZ_LT906474.1_2175458_2175548_+	NA|471aa|up_9|NZ_LT906474.1_2155893_2157306_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_LT906474.1_2157862_2158072_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_LT906474.1_2158526_2159153_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_LT906474.1_2159173_2161276_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_LT906474.1_2161288_2161927_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_LT906474.1_2161990_2162659_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_LT906474.1_2162655_2163441_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_LT906474.1_2163444_2164257_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_LT906474.1_2164268_2165873_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_LT906474.1_2165998_2166304_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_LT906474.1_2166876_2168133_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_LT906474.1_2168173_2169547_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_LT906474.1_2169761_2170403_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_LT906474.1_2170442_2171591_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_LT906474.1_2171881_2173093_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_LT906474.1_2173205_2174138_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_LT906474.1_2174134_2175160_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_LT906474.1_2175458_2175548_+	NA	NA|390aa|down_8|NZ_LT906474.1_2175713_2176883_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_LT906474.1_2177117_2177699_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_900186905.1_49923_G01	NZ_LT906474	Escherichia coli strain NCTC122 chromosome 1	5	2819093-2819184	5	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,PD-DExK,DEDDh,RT,DinG,WYL,Cas14u_CAS-V	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,PD-DExK,DEDDh,RT,DinG,WYL,Cas14u_CAS-V	NA|70aa|up_9|NZ_LT906474.1_2808169_2808379_-,NA	NA|70aa|up_9|NZ_LT906474.1_2808169_2808379_-	NA	NA|1321aa|up_8|NZ_LT906474.1_2808433_2812396_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_LT906474.1_2812435_2813074_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_LT906474.1_2813361_2814453_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_LT906474.1_2814452_2815145_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_LT906474.1_2815156_2815543_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_LT906474.1_2815550_2816351_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_LT906474.1_2816360_2816951_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_LT906474.1_2816961_2817456_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_LT906474.1_2817476_2818805_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_LT906474.1_2819607_2820204_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_LT906474.1_2820224_2820452_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_LT906474.1_2820489_2821731_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|419aa|down_3|NZ_LT906474.1_2822023_2823280_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_LT906474.1_2823540_2824461_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_LT906474.1_2824460_2824766_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_LT906474.1_2824917_2825517_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_LT906474.1_2825513_2828060_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_LT906474.1_2828059_2829232_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_LT906474.1_2829361_2830054_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_900186905.1_49923_G01	NZ_LT906474	Escherichia coli strain NCTC122 chromosome 1	6	3080606-3080750	6	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,PD-DExK,DEDDh,RT,DinG,WYL,Cas14u_CAS-V	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,PD-DExK,DEDDh,RT,DinG,WYL,Cas14u_CAS-V	NA,NA	NA|330aa|up_9|NZ_LT906474.1_3068504_3069494_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|303aa|up_8|NZ_LT906474.1_3069890_3070799_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|674aa|up_7|NZ_LT906474.1_3070990_3073012_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|226aa|up_6|NZ_LT906474.1_3073590_3074268_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|252aa|up_5|NZ_LT906474.1_3074260_3075016_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|385aa|up_4|NZ_LT906474.1_3075002_3076157_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|347aa|up_3|NZ_LT906474.1_3076153_3077194_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|430aa|up_2|NZ_LT906474.1_3077280_3078570_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|up_1|NZ_LT906474.1_3078628_3079105_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|428aa|up_0|NZ_LT906474.1_3079256_3080540_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_LT906474.1_3080773_3083035_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_LT906474.1_3083217_3084651_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_LT906474.1_3084726_3085779_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_LT906474.1_3085962_3086916_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_LT906474.1_3086956_3087952_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_LT906474.1_3088106_3088925_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_LT906474.1_3088925_3089984_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_LT906474.1_3089986_3090676_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_LT906474.1_3090675_3091449_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NZ_LT906474.1_3091615_3091765_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_900186905.1_49923_G01	NZ_LT906474	Escherichia coli strain NCTC122 chromosome 1	7	3322511-3322607	7	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,PD-DExK,DEDDh,RT,DinG,WYL,Cas14u_CAS-V	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,PD-DExK,DEDDh,RT,DinG,WYL,Cas14u_CAS-V	NA,NA	NA|231aa|up_9|NZ_LT906474.1_3314306_3314999_-	PRK15195, PRK15195, molecular chaperone FimC	NA|181aa|up_8|NZ_LT906474.1_3315218_3315761_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|289aa|up_7|NZ_LT906474.1_3316231_3317098_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|NZ_LT906474.1_3317099_3317312_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|NZ_LT906474.1_3317419_3317941_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|NZ_LT906474.1_3317976_3319362_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|NZ_LT906474.1_3319535_3320030_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|NZ_LT906474.1_3320032_3320755_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|NZ_LT906474.1_3320872_3321382_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|NZ_LT906474.1_3321378_3322446_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|NZ_LT906474.1_3322640_3323534_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|NZ_LT906474.1_3323530_3324346_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|NZ_LT906474.1_3324356_3325616_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|NZ_LT906474.1_3325625_3327293_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|NZ_LT906474.1_3327609_3328659_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|412aa|down_5|NZ_LT906474.1_3328680_3329916_+	TIGR03176, AllC, allantoate amidohydrolase	NA|262aa|down_6|NZ_LT906474.1_3329926_3330712_+	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|382aa|down_7|NZ_LT906474.1_3330939_3332085_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_8|NZ_LT906474.1_3332106_3333408_-	PRK11412, PRK11412, uracil/xanthine transporter	NA|454aa|down_9|NZ_LT906474.1_3333464_3334826_-	PRK08044, PRK08044, allantoinase AllB
GCF_900186905.1_49923_G01	NZ_LT906474	Escherichia coli strain NCTC122 chromosome 1	8	3462759-3462903	8	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,PD-DExK,DEDDh,RT,DinG,WYL,Cas14u_CAS-V	Orphan	TTTTGTAGGCCTGATAAGACGCGACAAGCGTCGCATCAGGCAT	43	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,PD-DExK,DEDDh,RT,DinG,WYL,Cas14u_CAS-V	NA,NA|28aa|down_2|NZ_LT906474.1_3464948_3465032_-	NA|357aa|up_9|NZ_LT906474.1_3447900_3448971_-	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|194aa|up_8|NZ_LT906474.1_3449063_3449645_+	PRK10045, PRK10045, ACP phosphodiesterase	NA|606aa|up_7|NZ_LT906474.1_3449649_3451467_-	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|458aa|up_6|NZ_LT906474.1_3451622_3452996_-	PRK10580, proY, putative proline-specific permease; Provisional	NA|440aa|up_5|NZ_LT906474.1_3453071_3454391_-	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|432aa|up_4|NZ_LT906474.1_3454797_3456093_-	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|230aa|up_3|NZ_LT906474.1_3456150_3456840_-	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|401aa|up_2|NZ_LT906474.1_3457029_3458232_+	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|1048aa|up_1|NZ_LT906474.1_3458228_3461372_+	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|395aa|up_0|NZ_LT906474.1_3461497_3462682_+	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|303aa|down_0|NZ_LT906474.1_3462926_3463835_-	PRK09557, PRK09557, fructokinase; Reviewed	NA|304aa|down_1|NZ_LT906474.1_3463959_3464871_+	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|28aa|down_2|NZ_LT906474.1_3464948_3465032_-	NA	NA|95aa|down_3|NZ_LT906474.1_3465518_3465803_-	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|226aa|down_4|NZ_LT906474.1_3465874_3466552_-	PRK10481, PRK10481, hypothetical protein; Provisional	NA|64aa|down_5|NZ_LT906474.1_3466809_3467001_-	PRK10380, PRK10380, hypothetical protein; Provisional	NA|175aa|down_6|NZ_LT906474.1_3467050_3467575_-	PRK03731, aroL, shikimate kinase AroL	NA|155aa|down_7|NZ_LT906474.1_3467751_3468216_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|270aa|down_8|NZ_LT906474.1_3468335_3469145_+	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|372aa|down_9|NZ_LT906474.1_3469161_3470277_-	PRK10245, adrA, diguanylate cyclase AdrA; Provisional
GCF_900186905.1_49923_G01	NZ_LT906474	Escherichia coli strain NCTC122 chromosome 1	9	3788416-3788547	9	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,PD-DExK,DEDDh,RT,DinG,WYL,Cas14u_CAS-V	Orphan	AATGCAGACTAACCCGCAGATCCAGCAGCGAAGAGA	36	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,PD-DExK,DEDDh,RT,DinG,WYL,Cas14u_CAS-V	NA,NA	NA|309aa|up_9|NZ_LT906474.1_3774529_3775456_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|221aa|up_8|NZ_LT906474.1_3775564_3776227_+	PRK10437, PRK10437, carbonic anhydrase; Provisional	NA|179aa|up_7|NZ_LT906474.1_3776267_3776804_-	PRK15423, PRK15423, hypoxanthine phosphoribosyltransferase; Provisional	NA|797aa|up_6|NZ_LT906474.1_3777009_3779400_+	TIGR03074, PQQ_membr_DH, membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family	NA|517aa|up_5|NZ_LT906474.1_3779601_3781152_-	PRK10965, PRK10965, multicopper oxidase; Provisional	NA|116aa|up_4|NZ_LT906474.1_3781317_3781665_+	pfam09691, T2SS_PulS_OutS, Type II secretion system pilotin lipoprotein (PulS_OutS)	NA|289aa|up_3|NZ_LT906474.1_3781770_3782637_+	PRK00811, PRK00811, polyamine aminopropyltransferase	NA|265aa|up_2|NZ_LT906474.1_3782652_3783447_+	PRK05462, PRK05462, adenosylmethionine decarboxylase	NA|121aa|up_1|NZ_LT906474.1_3783484_3783847_-	PRK05248, PRK05248, hypothetical protein; Provisional	NA|866aa|up_0|NZ_LT906474.1_3784021_3786619_-	PRK09238, PRK09238, bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated	NA|475aa|down_0|NZ_LT906474.1_3788897_3790322_-	PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed	NA|631aa|down_1|NZ_LT906474.1_3790646_3792539_-	PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated	NA|888aa|down_2|NZ_LT906474.1_3792553_3795217_-	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed	NA|255aa|down_3|NZ_LT906474.1_3795377_3796142_-	PRK09464, pdhR, pyruvate dehydrogenase complex transcriptional repressor PdhR	NA|458aa|down_4|NZ_LT906474.1_3796682_3798056_+	PRK10238, PRK10238, aromatic amino acid transporter AroP	NA|285aa|down_5|NZ_LT906474.1_3798098_3798953_-	pfam17113, AmpE, Regulatory signalling modulator protein AmpE	NA|184aa|down_6|NZ_LT906474.1_3798949_3799501_-	PRK11789, PRK11789, 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA|298aa|down_7|NZ_LT906474.1_3799588_3800482_+	PRK09016, PRK09016, carboxylating nicotinate-nucleotide diphosphorylase	NA|147aa|down_8|NZ_LT906474.1_3800684_3801125_+	PRK10574, PRK10574, putative major pilin subunit; Provisional	NA|462aa|down_9|NZ_LT906474.1_3801134_3802520_+	PRK10436, PRK10436, hypothetical protein; Provisional
GCF_900186905.1_49923_G01	NZ_LT906474	Escherichia coli strain NCTC122 chromosome 1	10	3882103-3882232	10	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,PD-DExK,DEDDh,RT,DinG,WYL,Cas14u_CAS-V	Orphan	GCTGGAGAGCAACCGTAGGCCGGATAAGATGCGCCAGCAT	40	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,PD-DExK,DEDDh,RT,DinG,WYL,Cas14u_CAS-V	NA,NA	NA|96aa|up_9|NZ_LT906474.1_3871093_3871381_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_8|NZ_LT906474.1_3871377_3872664_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_7|NZ_LT906474.1_3872714_3873656_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_6|NZ_LT906474.1_3873670_3874441_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|up_5|NZ_LT906474.1_3874914_3876429_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|up_4|NZ_LT906474.1_3876459_3877602_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|up_3|NZ_LT906474.1_3877730_3878948_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|up_2|NZ_LT906474.1_3879021_3880575_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|up_1|NZ_LT906474.1_3880683_3881469_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|up_0|NZ_LT906474.1_3881474_3882065_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_0|NZ_LT906474.1_3882273_3882669_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_1|NZ_LT906474.1_3882929_3886151_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_2|NZ_LT906474.1_3886168_3887317_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_3|NZ_LT906474.1_3887772_3888594_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]	NA|305aa|down_4|NZ_LT906474.1_3888760_3889675_-	PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional	NA|317aa|down_5|NZ_LT906474.1_3889740_3890691_-	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|150aa|down_6|NZ_LT906474.1_3890692_3891142_-	PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional	NA|165aa|down_7|NZ_LT906474.1_3891266_3891761_-	PRK00376, lspA, lipoprotein signal peptidase	NA|939aa|down_8|NZ_LT906474.1_3891760_3894577_-	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|314aa|down_9|NZ_LT906474.1_3894619_3895561_-	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase
