The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LT906460	Staphylococcus simiae strain NCTC13838 chromosome 1	2643976	215797	276852	2643976	holin,transposase	Streptococcus_phage(38.46%)	51	NA	NA
WP_157738314.1|215797_216982_-|transposase	IS110 family transposase	transposase	A0A1X9I619	Streptococcus_phage	36.8	4.4e-61
WP_002464223.1|217364_218120_-	SDR family oxidoreductase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	24.9	3.6e-08
WP_002464224.1|218234_218918_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
WP_002464225.1|219058_219295_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_002464226.1|219370_221218_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	32.1	3.8e-88
WP_002464227.1|221358_221475_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
WP_088177485.1|222044_222155_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_002464229.1|223212_223812_-	phosphoglucomutase/phosphomannomutase family protein	NA	A0A1X9I671	Streptococcus_phage	42.0	1.0e-29
WP_002464230.1|224158_224395_+	hypothetical protein	NA	D7RWE8	Brochothrix_phage	48.9	2.6e-05
WP_002464232.1|224901_227334_+	CDP-glycerol glycerophosphotransferase family protein	NA	NA	NA	NA	NA
WP_095092550.1|227364_230271_+	CDP-glycerol glycerophosphotransferase family protein	NA	NA	NA	NA	NA
WP_002464233.1|230525_230777_+	hypothetical protein	NA	NA	NA	NA	NA
WP_142380913.1|230742_231834_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	35.6	6.4e-43
WP_002462571.1|232011_233490_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002462572.1|233654_234791_+	MFS transporter	NA	NA	NA	NA	NA
WP_002462573.1|235108_235780_-	type 1 glutamine amidotransferase	NA	NA	NA	NA	NA
WP_002462574.1|236019_236376_-	DUF488 family protein	NA	NA	NA	NA	NA
WP_002462575.1|236494_236923_+	6-carboxytetrahydropterin synthase	NA	NA	NA	NA	NA
WP_002462576.1|237052_237232_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002462577.1|237260_238406_-	nitric oxide dioxygenase	NA	NA	NA	NA	NA
WP_002462578.1|239014_239968_+	L-lactate dehydrogenase	NA	NA	NA	NA	NA
WP_002462579.1|240262_241204_+	nucleoside hydrolase	NA	NA	NA	NA	NA
WP_040801522.1|241469_242921_+	SulP family inorganic anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	48.7	2.4e-117
WP_002462581.1|243210_244188_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_002461629.1|244625_246038_-	sucrose-6-phosphate hydrolase	NA	NA	NA	NA	NA
WP_002461628.1|246063_247341_-	MFS transporter	NA	NA	NA	NA	NA
WP_002461626.1|249202_251284_+	transcription antiterminator	NA	NA	NA	NA	NA
WP_002461624.1|251283_251751_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_002461623.1|251791_252070_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_002461622.1|252189_253449_+	PTS galactitol transporter subunit IIC	NA	NA	NA	NA	NA
WP_002461621.1|253466_254501_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_002461620.1|254517_254664_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002461619.1|254687_255734_+	galactitol-1-phosphate 5-dehydrogenase	NA	A0A0K0KVL7	Prochlorococcus_phage	26.6	1.3e-13
WP_002461617.1|255977_256847_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.8	1.3e-73
WP_002461615.1|257030_258518_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_002461613.1|258584_260222_-	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	37.1	1.2e-96
WP_002461612.1|260481_261972_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_002461611.1|262124_263069_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	71.1	4.0e-126
WP_002461610.1|263263_263662_-	glycerol-3-phosphate cytidylyltransferase	NA	A0A222YWT0	Streptomyces_phage	39.3	1.9e-16
WP_002461607.1|263762_265934_-	bifunctional glycosyltransferase family 2 protein/CDP-glycerol:glycerophosphate glycerophosphotransferase	NA	NA	NA	NA	NA
WP_002461606.1|266216_267389_+	CDP-glycerol glycerophosphotransferase family protein	NA	NA	NA	NA	NA
WP_002461605.1|267438_268278_+	trypsin-like peptidase domain-containing protein	NA	NA	NA	NA	NA
WP_002461604.1|268567_268876_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002461603.1|268924_269791_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002461602.1|269993_270611_+	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
WP_002461600.1|270671_271943_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_002461598.1|272212_272887_+	iron-sulfur cluster repair di-iron protein ScdA	NA	NA	NA	NA	NA
WP_002461596.1|273094_274855_+	sensor histidine kinase	NA	B6DZC2	Enterobacteria_phage	30.1	2.6e-54
WP_002461595.1|274851_275592_+	DNA-binding response regulator	NA	NA	NA	NA	NA
WP_050801493.1|275714_276158_+|holin	antiholin-like murein hydrolase modulator LrgA	holin	NA	NA	NA	NA
WP_002461593.1|276150_276852_+|holin	antiholin-like protein LrgB	holin	NA	NA	NA	NA
>prophage 2
NZ_LT906460	Staphylococcus simiae strain NCTC13838 chromosome 1	2643976	409628	424927	2643976	terminase,integrase	Staphylococcus_phage(56.25%)	21	399473:399517	437064:437108
399473:399517	attL	TTCCTAGGGTGCTGTCTCAGCCTGTAGTCTTCGACTAGCACTGCT	NA	NA	NA	NA
WP_002462005.1|409628_411095_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.2	3.0e-96
WP_002462003.1|411120_412662_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	32.6	2.8e-23
WP_002462002.1|412755_413892_-|integrase	site-specific integrase	integrase	Q938N9	Temperate_phage	43.7	1.2e-68
WP_002462001.1|413976_414594_-	helix-turn-helix transcriptional regulator	NA	A0A0A8WFG2	Clostridium_phage	40.6	3.7e-11
WP_002461999.1|414736_414958_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_002461998.1|414935_415196_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002461996.1|415328_415484_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002461994.1|415485_415701_+	hypothetical protein	NA	A0A1W6JPA6	Staphylococcus_phage	57.4	1.1e-12
WP_002461993.1|415690_415987_+	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	42.0	1.7e-14
WP_002461992.1|416082_418338_+	DNA primase	NA	A0A2H4JCU9	uncultured_Caudovirales_phage	75.7	0.0e+00
WP_103262348.1|418637_418985_+	hypothetical protein	NA	Q4ZE71	Staphylococcus_phage	35.0	5.4e-12
WP_002461990.1|418985_419627_+	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	77.5	1.2e-92
WP_040800965.1|420073_420427_+	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	73.0	5.7e-41
WP_002461987.1|420450_421179_+	hypothetical protein	NA	Q4ZE82	Staphylococcus_phage	31.7	3.9e-28
WP_002461986.1|421239_421704_+	hypothetical protein	NA	A0A1W6JQH7	Staphylococcus_phage	58.7	9.7e-33
WP_002461984.1|421707_422049_+	hypothetical protein	NA	Q4ZE86	Staphylococcus_phage	35.2	3.1e-12
WP_095092566.1|422053_422620_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	56.2	3.2e-54
WP_002464992.1|422862_423372_+	DUF4065 domain-containing protein	NA	D7RWK7	Brochothrix_phage	40.5	8.5e-22
WP_002464993.1|423364_423973_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002464994.1|424103_424562_+	GyrI-like domain-containing protein	NA	NA	NA	NA	NA
WP_103262347.1|424609_424927_+	DUF3102 domain-containing protein	NA	A0A2H4JAH5	uncultured_Caudovirales_phage	57.0	3.4e-21
437064:437108	attR	AGCAGTGCTAGTCGAAGACTACAGGCTGAGACAGCACCCTAGGAA	NA	NA	NA	NA
>prophage 3
NZ_LT906460	Staphylococcus simiae strain NCTC13838 chromosome 1	2643976	722799	729348	2643976		Bacillus_phage(16.67%)	9	NA	NA
WP_002462146.1|722799_723486_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	37.8	9.6e-37
WP_002462145.1|723460_723934_-	DoxX family protein	NA	NA	NA	NA	NA
WP_002462144.1|724043_724475_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_002462143.1|724684_725266_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002462142.1|725471_726185_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	42.7	7.9e-50
WP_002462141.1|726177_726609_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.6	1.5e-06
WP_002462140.1|726611_727283_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	54.7	3.4e-63
WP_002462139.1|727619_728213_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	37.7	2.1e-32
WP_002462137.1|728196_729348_+	anthranilate synthase component I family protein	NA	A0A0B5J984	Pandoravirus	37.2	5.2e-19
>prophage 4
NZ_LT906460	Staphylococcus simiae strain NCTC13838 chromosome 1	2643976	747616	756702	2643976		uncultured_Caudovirales_phage(71.43%)	8	NA	NA
WP_002463918.1|747616_748117_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	70.8	8.5e-51
WP_002463917.1|748155_749013_-	DMT family transporter	NA	NA	NA	NA	NA
WP_002463916.1|749822_750221_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	75.0	6.6e-54
WP_002463915.1|750183_752289_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_002463914.1|752391_753360_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.9	9.4e-171
WP_002463844.1|754029_755001_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	81.7	4.1e-142
WP_002463843.1|754987_755944_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	54.0	1.2e-05
WP_002463842.1|755943_756702_+	ATP-binding cassette domain-containing protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	29.1	5.5e-17
>prophage 5
NZ_LT906460	Staphylococcus simiae strain NCTC13838 chromosome 1	2643976	951524	1002283	2643976	protease,terminase,holin,transposase,capsid,tail,portal,integrase,head,plate	Staphylococcus_phage(45.61%)	74	955949:955967	999640:999658
WP_002461907.1|951524_952127_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_002461909.1|952141_952318_-	DUF2187 family protein	NA	NA	NA	NA	NA
WP_095092635.1|952400_953348_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	72.4	1.8e-134
WP_002461530.1|953591_954578_+	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_002461531.1|954658_954877_-	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_002461533.1|955084_955654_+	competence protein ComK	NA	NA	NA	NA	NA
955949:955967	attL	CCCTCCGTTTCCGTTATTT	NA	NA	NA	NA
WP_095092637.1|956119_957184_-|integrase	tyrosine-type recombinase/integrase	integrase	B7T092	Staphylococcus_virus	87.3	5.5e-180
WP_002464319.1|957276_957756_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002464320.1|957804_958431_-	helix-turn-helix domain-containing protein	NA	A0A2H4J3T7	uncultured_Caudovirales_phage	86.5	2.0e-97
WP_002464321.1|958627_958843_+	helix-turn-helix transcriptional regulator	NA	A0A2H4JBV7	uncultured_Caudovirales_phage	87.3	8.2e-27
WP_095092639.1|958858_959548_+	phage repressor protein	NA	A9CR56	Staphylococcus_phage	66.5	2.7e-79
WP_002462593.1|960033_960267_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002462594.1|960283_960448_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002462595.1|960506_960722_+	DUF771 domain-containing protein	NA	B7T098	Staphylococcus_virus	88.4	4.6e-30
WP_002462596.1|960736_960889_+	hypothetical protein	NA	NA	NA	NA	NA
WP_040801540.1|960881_961073_+	DUF1270 family protein	NA	A0A059T7J6	Staphylococcus_phage	62.3	1.2e-08
WP_002462598.1|961133_962816_+	YSIRK-type signal peptide-containing protein	NA	NA	NA	NA	NA
WP_002462599.1|962816_963077_+	DUF1108 family protein	NA	A0A2I6PDH1	Staphylococcus_phage	68.6	3.6e-29
WP_040801552.1|963082_963334_+	hypothetical protein	NA	A0A0H3U2S3	Staphylococcus_phage	63.9	3.0e-20
WP_002462601.1|963326_963863_+	hypothetical protein	NA	A0A0H3U480	Staphylococcus_phage	93.2	4.4e-85
WP_002462602.1|963863_964499_+	ERF family protein	NA	A0A059T7J7	Staphylococcus_phage	66.5	2.0e-76
WP_002462603.1|964498_964942_+	single-stranded DNA-binding protein	NA	A0A1W6JPL9	Staphylococcus_phage	71.2	3.9e-55
WP_002462604.1|964954_965506_+	HNH endonuclease	NA	A0A1W6JPN8	Staphylococcus_phage	75.0	6.3e-79
WP_002462605.1|965506_966178_+	hypothetical protein	NA	A0A2H4J4Z9	uncultured_Caudovirales_phage	83.7	3.9e-107
WP_002462606.1|966174_966930_+	DnaD domain protein	NA	B7T0A7	Staphylococcus_virus	74.9	2.1e-101
WP_002462607.1|966929_967283_+	hypothetical protein	NA	B7T0A8	Staphylococcus_virus	86.3	7.6e-54
WP_002462608.1|967282_968524_+	AAA family ATPase	NA	A0A0E3T8L1	Staphylococcus_phage	87.7	3.4e-205
WP_002462609.1|968520_968757_+	hypothetical protein	NA	Q4ZA49	Staphylococcus_virus	70.3	5.7e-21
WP_002462610.1|968719_968944_+	DUF3269 family protein	NA	A7TWN4	Staphylococcus_phage	75.7	1.0e-24
WP_002462611.1|968952_969357_+	DUF1064 domain-containing protein	NA	A0A2H4J2N3	uncultured_Caudovirales_phage	86.5	1.5e-61
WP_002462612.1|969361_969547_+	DUF3113 family protein	NA	R4IFK8	Staphylococcus_phage	55.7	1.2e-13
WP_002462613.1|969539_969842_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002462614.1|969868_970384_+	hypothetical protein	NA	C8CGZ9	Staphylococcus_phage	53.9	2.1e-12
WP_002462615.1|970388_970628_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002462616.1|970605_970788_+	hypothetical protein	NA	A0A1W6JPR6	Staphylococcus_phage	68.3	1.3e-17
WP_002462617.1|970798_971020_+	DUF3310 domain-containing protein	NA	A0A2H4J2X1	uncultured_Caudovirales_phage	78.3	1.3e-27
WP_002462619.1|971205_971520_+	DUF1140 family protein	NA	A0A2H4J2Y8	uncultured_Caudovirales_phage	67.0	5.0e-33
WP_002462620.1|971513_971915_+	hypothetical protein	NA	A0A060AF22	Staphylococcus_phage	46.8	3.3e-21
WP_162096499.1|971968_972163_+	hypothetical protein	NA	NA	NA	NA	NA
WP_136527609.1|972159_972426_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002462625.1|972661_973198_+	dUTP pyrophosphatase	NA	A0A1J0MG68	Staphylococcus_phage	80.2	1.1e-72
WP_002462626.1|973234_973387_+	DUF1381 domain-containing protein	NA	Q4ZCG4	Staphylococcus_virus	55.6	8.7e-07
WP_002462627.1|973379_973562_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002462628.1|973564_973762_+	DUF1514 family protein	NA	A0A0D4DCK3	Staphylococcus_phage	46.2	1.7e-07
WP_002462629.1|973774_974209_+	transcriptional regulator	NA	A7TWI7	Staphylococcus_phage	86.7	2.4e-65
WP_002462630.1|974746_975100_+	HNH endonuclease	NA	H9A108	Staphylococcus_phage	79.6	6.7e-50
WP_002462631.1|975244_975718_+|terminase	phage terminase small subunit P27 family	terminase	A0A1D6Z2B0	Staphylococcus_phage	68.3	5.2e-58
WP_002462632.1|975710_977462_+|terminase	terminase large subunit	terminase	A0A0N9SI77	Staphylococcus_phage	88.7	6.4e-312
WP_002462633.1|977474_977663_+	hypothetical protein	NA	A0A2H4J9T6	uncultured_Caudovirales_phage	60.9	9.4e-11
WP_002462634.1|977665_978898_+|portal	phage portal protein	portal	A0A2H4JA65	uncultured_Caudovirales_phage	87.8	1.1e-208
WP_002462635.1|978887_979445_+|head,protease	HK97 family phage prohead protease	head,protease	H9A114	Staphylococcus_phage	84.9	6.7e-89
WP_002462636.1|979487_980819_+|capsid	phage major capsid protein	capsid	A0A2H4J4F8	uncultured_Caudovirales_phage	80.5	1.1e-158
WP_002462637.1|980833_981172_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2H4JDD1	uncultured_Caudovirales_phage	76.8	9.2e-41
WP_002462638.1|981161_981491_+|head,tail	head-tail adaptor protein	head,tail	A0A2H4JGE5	uncultured_Caudovirales_phage	82.6	6.9e-49
WP_002462639.1|981487_981898_+	hypothetical protein	NA	A0A2H4J3L8	uncultured_Caudovirales_phage	61.8	1.3e-41
WP_002462640.1|981898_982303_+	hypothetical protein	NA	A0A2H4JA89	uncultured_Caudovirales_phage	88.8	1.4e-64
WP_002462641.1|982315_982939_+|tail	phage tail protein	tail	A0A2H4JH93	uncultured_Caudovirales_phage	86.5	3.1e-98
WP_002462642.1|982953_983139_+	hypothetical protein	NA	A0A0N9STM6	Staphylococcus_phage	83.6	1.8e-22
WP_002462643.1|983201_983564_+	hypothetical protein	NA	A0A2H4JDN2	uncultured_Caudovirales_phage	87.5	1.5e-52
WP_002462645.1|983777_988181_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A2H4JDT7	uncultured_Caudovirales_phage	66.5	0.0e+00
WP_002462646.1|988182_989010_+|tail	phage tail family protein	tail	A0A2H4JFA2	uncultured_Caudovirales_phage	73.1	8.1e-123
WP_002462647.1|989018_990617_+|tail	phage tail protein	tail	A0A2H4J5K5	uncultured_Caudovirales_phage	69.3	3.5e-223
WP_002462648.1|990609_991050_+	hypothetical protein	NA	A0A2H4JCK2	uncultured_Caudovirales_phage	75.9	1.3e-05
WP_002462649.1|991062_993669_+	hypothetical protein	NA	A0A2H4JF10	uncultured_Caudovirales_phage	62.7	7.6e-308
WP_002462650.1|993682_995170_+|plate	BppU family phage baseplate upper protein	plate	A0A2H4JH16	uncultured_Caudovirales_phage	63.6	1.7e-91
WP_002462652.1|995595_995745_+	XkdX family protein	NA	A0A060AB44	Staphylococcus_phage	56.5	5.3e-09
WP_002462653.1|995781_996225_+	hypothetical protein	NA	A0A2H4JB99	uncultured_Caudovirales_phage	48.3	4.8e-37
WP_002462654.1|996197_996611_+	hypothetical protein	NA	A0A2H4J2M0	uncultured_Caudovirales_phage	63.5	9.2e-43
WP_002462655.1|996660_996921_+|holin	phage holin	holin	A0A0F6N3M0	Staphylococcus_phage	84.9	1.8e-36
WP_002462656.1|996923_998330_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCA1	uncultured_Caudovirales_phage	86.5	2.2e-245
WP_157738308.1|998463_999243_+	glycerophosphodiester phosphodiesterase	NA	A0A076G4Q2	Staphylococcus_phage	36.3	4.9e-29
WP_002462658.1|999347_999560_+	hypothetical protein	NA	NA	NA	NA	NA
WP_050801503.1|1000843_1001767_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
999640:999658	attR	CCCTCCGTTTCCGTTATTT	NA	NA	NA	NA
WP_002462662.1|1002055_1002283_-	TM2 domain-containing protein	NA	A0A060AN66	Enterococcus_phage	43.9	9.0e-08
>prophage 6
NZ_LT906460	Staphylococcus simiae strain NCTC13838 chromosome 1	2643976	1210590	1286740	2643976	protease,terminase,holin,transposase,capsid,portal,tRNA	Staphylococcus_phage(32.0%)	63	NA	NA
WP_002464267.1|1210590_1211877_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_002464266.1|1211899_1213603_+|tRNA	proline--tRNA ligase	tRNA	NA	NA	NA	NA
WP_002464265.1|1213918_1218235_+	PolC-type DNA polymerase III	NA	A0A0A8WJ41	Clostridium_phage	41.2	4.5e-23
WP_002464264.1|1218431_1218899_+	ribosome maturation factor RimP	NA	NA	NA	NA	NA
WP_002464263.1|1218919_1220119_+	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
WP_095092673.1|1220137_1220422_+	YlxR family protein	NA	NA	NA	NA	NA
WP_002464261.1|1220418_1220736_+	ribosomal L7Ae/L30e/S12e/Gadd45 family protein	NA	NA	NA	NA	NA
WP_002464260.1|1220740_1222858_+	translation initiation factor IF-2	NA	E3T4N3	Cafeteria_roenbergensis_virus	24.7	1.5e-24
WP_002464258.1|1223698_1224052_+	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
WP_002464257.1|1224378_1225296_+|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
WP_002464256.1|1225310_1226282_+	riboflavin biosynthesis protein RibF	NA	A0A1V0SD03	Indivirus	28.6	4.7e-05
WP_002464255.1|1226395_1226665_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_002464254.1|1226941_1229041_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_002464253.1|1229752_1231426_+	ribonuclease J	NA	NA	NA	NA	NA
WP_002464252.1|1231644_1234029_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	47.7	9.6e-84
WP_002464251.1|1234031_1234745_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_088177487.1|1234857_1236045_+	insulinase family protein	NA	A0A1X9I714	Streptococcus_phage	29.6	7.0e-43
WP_002464249.1|1236041_1237328_+	insulinase family protein	NA	G3MBJ8	Bacillus_virus	22.9	4.2e-17
WP_002464248.1|1237327_1238032_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_002464247.1|1238124_1238952_+	YmfK family protein	NA	NA	NA	NA	NA
WP_002464246.1|1238974_1239367_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_002464245.1|1239400_1239976_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_002464244.1|1240655_1241798_+	CinA family nicotinamide mononucleotide deamidase-related protein	NA	NA	NA	NA	NA
WP_002464243.1|1241971_1243021_+	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	65.3	7.1e-124
WP_002464242.1|1243484_1245044_+	ribonuclease Y	NA	NA	NA	NA	NA
WP_095092675.1|1245224_1246541_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	30.5	4.1e-44
WP_002463863.1|1247326_1247542_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002463864.1|1247706_1248498_+	TIGR00282 family metallophosphoesterase	NA	NA	NA	NA	NA
WP_002463865.1|1248751_1250512_+	2-oxoacid:acceptor oxidoreductase subunit alpha	NA	NA	NA	NA	NA
WP_002463866.1|1250512_1251379_+	2-oxoacid:ferredoxin oxidoreductase subunit beta	NA	NA	NA	NA	NA
WP_002463867.1|1251742_1252033_+	thiamine-binding protein	NA	NA	NA	NA	NA
WP_002463868.1|1252434_1253979_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_002463869.1|1253980_1254334_+	YlbF family regulator	NA	NA	NA	NA	NA
WP_002463870.1|1254370_1254868_+	energy coupling factor transporter S component ThiW	NA	NA	NA	NA	NA
WP_002463871.1|1255183_1257802_+	DNA mismatch repair protein MutS	NA	A0A1V0SJ67	Klosneuvirus	25.9	1.9e-40
WP_002463872.1|1257814_1259755_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	30.7	1.3e-62
WP_002463873.1|1259768_1260302_+	glycerol-3-phosphate responsive antiterminator	NA	NA	NA	NA	NA
WP_002463874.1|1260987_1261806_+	aquaporin family protein	NA	M1H4F4	Acanthocystis_turfacea_Chlorella_virus	35.7	2.5e-31
WP_002463875.1|1261941_1263438_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_002463876.1|1263600_1265274_+	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_002463887.1|1266030_1266939_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_088177474.1|1266963_1267899_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_002463889.1|1267914_1268154_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_002463890.1|1268507_1268984_-	glutathione peroxidase	NA	Q70H87	Fowlpox_virus	38.0	1.2e-22
WP_002463891.1|1269094_1270333_+	GTPase HflX	NA	NA	NA	NA	NA
WP_002463892.1|1270351_1271590_+	methionine gamma-lyase family protein	NA	NA	NA	NA	NA
WP_162096503.1|1271831_1272200_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002463894.1|1272218_1273559_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_002463896.1|1274120_1274309_+	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	69.4	3.0e-17
WP_002463898.1|1274728_1274929_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	58.5	6.7e-15
WP_002463899.1|1275201_1275387_+	type II toxin-antitoxin system HicA family toxin	NA	A0A0D4DC32	Acinetobacter_phage	73.7	1.3e-17
WP_002463900.1|1275422_1275818_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A1P8VVW2	Streptococcus_phage	44.0	9.2e-24
WP_002463901.1|1275983_1276412_+|terminase	terminase small subunit	terminase	H9A0M8	Staphylococcus_phage	68.8	1.7e-39
WP_002463902.1|1276398_1277673_+|terminase	PBSX family phage terminase large subunit	terminase	Q4ZE37	Staphylococcus_virus	74.1	1.7e-191
WP_002463903.1|1277687_1279130_+|portal	phage portal protein	portal	Q4ZE36	Staphylococcus_virus	67.9	2.9e-184
WP_002463904.1|1279122_1280511_+|capsid	minor capsid protein	capsid	A0A1J0MFV1	Staphylococcus_phage	59.1	1.9e-116
WP_002463905.1|1280530_1280770_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002463906.1|1280931_1281525_+	DUF4355 domain-containing protein	NA	A0A1J0MFB3	Staphylococcus_phage	45.6	3.1e-15
WP_002463907.1|1281545_1281965_+|holin	phage holin family protein	holin	H9A0N3	Staphylococcus_phage	62.7	4.7e-10
WP_002463911.1|1283300_1283498_+	hypothetical protein	NA	A0A0K1LL29	Staphylococcus_phage	72.1	7.0e-17
WP_088177476.1|1284603_1284912_+	hypothetical protein	NA	D7RWK9	Brochothrix_phage	35.6	5.9e-10
WP_136527613.1|1285343_1285484_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_002465207.1|1286386_1286740_+	hypothetical protein	NA	A0A1J0MF61	Staphylococcus_phage	49.6	3.7e-24
>prophage 7
NZ_LT906460	Staphylococcus simiae strain NCTC13838 chromosome 1	2643976	1633838	1643251	2643976	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_002462056.1|1633838_1634357_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	4.3e-29
WP_002462055.1|1634379_1636653_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.2	3.0e-66
WP_002462956.1|1637229_1639509_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	36.0	1.1e-31
WP_002462958.1|1639780_1640041_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	42.6	5.7e-06
WP_002462960.1|1640058_1641198_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	3.2e-85
WP_002462962.1|1641219_1642245_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_002462964.1|1642246_1643251_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	2.2e-05
>prophage 8
NZ_LT906460	Staphylococcus simiae strain NCTC13838 chromosome 1	2643976	1770226	1808424	2643976	tRNA	Staphylococcus_phage(92.86%)	33	NA	NA
WP_002464297.1|1770226_1776499_-	DUF1542 domain-containing protein	NA	A0A2H4PQU6	Staphylococcus_phage	31.1	1.4e-57
WP_002464296.1|1776793_1777105_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	79.6	2.2e-41
WP_002464295.1|1777120_1779535_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	92.1	0.0e+00
WP_002464294.1|1779818_1781006_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	85.5	1.1e-192
WP_002464293.1|1781114_1782068_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	89.5	3.4e-72
WP_002464292.1|1782064_1782625_+	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	72.0	6.2e-74
WP_002464291.1|1782681_1783083_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002464290.1|1783513_1784344_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_002464289.1|1784578_1785577_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	85.6	5.0e-159
WP_002464288.1|1785706_1786165_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	91.4	2.3e-63
WP_002464287.1|1786177_1787383_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	81.5	1.4e-187
WP_002464286.1|1787393_1788026_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	79.0	5.7e-92
WP_002464285.1|1788033_1789077_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	77.3	7.0e-156
WP_002464284.1|1789454_1790975_-	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	78.6	2.5e-21
WP_002464283.1|1791331_1792189_-	glucosaminidase domain-containing protein	NA	Q4ZCC7	Staphylococcus_virus	38.1	4.4e-39
WP_002464282.1|1792419_1792650_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002464280.1|1793337_1793775_+	competence protein ComK	NA	NA	NA	NA	NA
WP_002464279.1|1793767_1794211_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	57.1	4.2e-33
WP_002464278.1|1794453_1795167_-	transaldolase	NA	M1PR54	Cyanophage	34.8	2.1e-18
WP_002464277.1|1795719_1796022_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002464276.1|1796201_1796570_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	68.6	4.2e-39
WP_002464275.1|1796563_1796917_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	37.6	6.7e-10
WP_002464274.1|1797074_1797908_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	73.3	3.6e-118
WP_002464273.1|1798028_1798937_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	91.4	1.0e-118
WP_002464272.1|1799055_1800252_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	93.2	6.7e-203
WP_002464271.1|1800621_1802214_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	93.4	2.0e-295
WP_162096506.1|1802696_1803455_-	prolyl oligopeptidase family serine peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	78.0	2.5e-110
WP_040802166.1|1803459_1803933_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	66.0	2.5e-52
WP_002464484.1|1803998_1804250_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	91.8	5.8e-40
WP_040802164.1|1804246_1805245_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	59.5	5.1e-111
WP_002464482.1|1805234_1806656_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	64.0	6.0e-174
WP_136527616.1|1806830_1807331_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	44.2	9.5e-26
WP_002464480.1|1807710_1808424_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	33.9	4.5e-13
>prophage 9
NZ_LT906460	Staphylococcus simiae strain NCTC13838 chromosome 1	2643976	1814018	1824726	2643976	integrase	Staphylococcus_phage(53.85%)	15	1809328:1809343	1832184:1832199
1809328:1809343	attL	TAAATTTATTATAATA	NA	NA	NA	NA
WP_002464470.1|1814018_1814783_-	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	44.0	7.4e-54
WP_002464466.1|1816797_1817232_+	DUF4145 domain-containing protein	NA	A0A1X9I5M7	Streptococcus_phage	43.2	8.3e-26
WP_002464465.1|1817228_1817390_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002464464.1|1818190_1818412_-	DUF2483 family protein	NA	A0A1W6JQ25	Staphylococcus_phage	67.1	2.0e-20
WP_103262359.1|1818383_1818668_-	hypothetical protein	NA	A0A0H3U2S3	Staphylococcus_phage	63.9	4.4e-20
WP_002464459.1|1819342_1819558_-	DUF771 domain-containing protein	NA	B7T098	Staphylococcus_virus	84.5	3.0e-29
WP_002464458.1|1819617_1819827_+	hypothetical protein	NA	W5R9J5	Staphylococcus_phage	84.1	4.8e-24
WP_002464457.1|1819816_1819960_-	hypothetical protein	NA	W5R8I6	Staphylococcus_phage	78.7	1.2e-10
WP_002464456.1|1820052_1820523_+	hypothetical protein	NA	NA	NA	NA	NA
WP_095092763.1|1820734_1821421_-	phage repressor protein	NA	A9CR56	Staphylococcus_phage	82.1	2.9e-102
WP_002463692.1|1821443_1821668_-	helix-turn-helix transcriptional regulator	NA	A0A059T617	Staphylococcus_phage	94.1	5.4e-29
WP_002463690.1|1821831_1822158_+	helix-turn-helix transcriptional regulator	NA	Q4ZC39	Staphylococcus_virus	79.4	4.4e-40
WP_002463686.1|1822645_1823485_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	A0A2H4PQQ5	Staphylococcus_phage	34.5	4.2e-26
WP_002463683.1|1823672_1824128_+|integrase	phage integrase SAM-like domain-containing protein	integrase	B7T092	Staphylococcus_virus	83.8	1.0e-58
WP_095092765.1|1824165_1824726_+|integrase	site-specific integrase	integrase	B7T092	Staphylococcus_virus	88.6	2.8e-90
1832184:1832199	attR	TAAATTTATTATAATA	NA	NA	NA	NA
