The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LT905064	Salmonella enterica subsp. enterica serovar Typhi isolate 1554-sc-2165329 chromosome 1	4765638	739037	775147	4765638	tRNA,transposase,bacteriocin,protease,integrase	Acinetobacter_phage(33.33%)	39	728670:728684	762425:762439
728670:728684	attL	CCATGCCAGCATCAA	NA	NA	NA	NA
WP_000421096.1|739037_739316_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
WP_000768134.1|739558_739825_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
WP_001141622.1|739821_740139_-	PAAR domain-containing protein	NA	NA	NA	NA	NA
WP_014341481.1|741259_741604_-|integrase	integrase	integrase	NA	NA	NA	NA
WP_001681938.1|741788_742073_-	DUF4102 domain-containing protein	NA	A0A0P0IRB7	Acinetobacter_phage	35.2	3.2e-10
WP_000234466.1|742414_743122_-	DUF554 domain-containing protein	NA	NA	NA	NA	NA
WP_001049802.1|745730_746987_-	nucleoside permease	NA	NA	NA	NA	NA
WP_000976287.1|747203_748289_-	membrane-bound lytic murein transglycosylase MltC	NA	A0A0H3V0Q1	Geobacillus_virus	39.0	5.8e-12
WP_000091706.1|748401_748677_-	oxidative damage protection protein	NA	NA	NA	NA	NA
WP_001148958.1|748704_749757_-	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_000786887.1|749911_750631_+|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
WP_001107559.1|750630_750957_+	YggL family protein	NA	NA	NA	NA	NA
WP_000984827.1|751006_751726_+	DUF2884 domain-containing protein	NA	NA	NA	NA	NA
WP_000502119.1|751848_752307_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000394189.1|752625_753672_+	L-asparaginase 2	NA	NA	NA	NA	NA
WP_000252198.1|753804_754812_+	DUF1202 domain-containing protein	NA	NA	NA	NA	NA
WP_001096530.1|754902_756039_-	radical SAM family heme chaperone HemW	NA	NA	NA	NA	NA
WP_001174773.1|756031_756625_-	XTP/dITP diphosphatase	NA	NA	NA	NA	NA
WP_001277205.1|756632_756923_-	YggU family protein	NA	NA	NA	NA	NA
WP_001094848.1|756919_757486_-	YggT family protein	NA	NA	NA	NA	NA
WP_000997790.1|757504_758209_-	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_001055657.1|758226_759207_+	type IV pilus twitching motility protein PilT	NA	NA	NA	NA	NA
WP_000098333.1|759336_760023_+	global regulatory protein	NA	NA	NA	NA	NA
WP_001285491.1|760069_760486_-	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_001053167.1|760485_761049_-	YqgE/AlgH family protein	NA	NA	NA	NA	NA
WP_000593242.1|761264_762212_-	glutathione synthase	NA	NA	NA	NA	NA
WP_001800534.1|762231_762963_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
762425:762439	attR	TTGATGCTGGCATGG	NA	NA	NA	NA
WP_000286121.1|763039_763747_-	deoxyribonuclease I	NA	NA	NA	NA	NA
WP_000856775.1|763842_764340_-|protease	SprT family zinc-dependent metalloprotease	protease	NA	NA	NA	NA
WP_001113171.1|764418_765813_-	galactose/proton symporter	NA	NA	NA	NA	NA
WP_001062140.1|766305_767460_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	63.9	1.5e-130
WP_001803086.1|767515_767815_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077905074.1|767811_767976_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000729109.1|768109_768241_+	acid stress response protein YqgB	NA	NA	NA	NA	NA
WP_001278580.1|768249_770226_+	biosynthetic arginine decarboxylase	NA	NA	NA	NA	NA
WP_000105550.1|770453_771374_+	agmatinase	NA	NA	NA	NA	NA
WP_000701830.1|771474_772233_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_000098658.1|772508_774500_+	transketolase	NA	NA	NA	NA	NA
WP_000502119.1|774688_775147_+|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_LT905064	Salmonella enterica subsp. enterica serovar Typhi isolate 1554-sc-2165329 chromosome 1	4765638	1047567	1113555	4765638	tail,tRNA	Salmonella_phage(41.18%)	55	NA	NA
WP_000047238.1|1047567_1050198_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	38.3	3.5e-79
WP_000906486.1|1050432_1050618_+	carbon storage regulator CsrA	NA	A0A2I7RT00	Vibrio_phage	66.7	4.9e-12
WP_000271296.1|1052016_1052583_+	fructose-1-phosphate/6-phosphogluconate phosphatase	NA	M1I5S4	Acanthocystis_turfacea_Chlorella_virus	27.6	7.2e-14
WP_001279499.1|1052579_1053005_+	DedA family protein	NA	NA	NA	NA	NA
WP_000611827.1|1053081_1054638_+	glutamate--cysteine ligase	NA	NA	NA	NA	NA
WP_001130194.1|1054787_1055303_+	S-ribosylhomocysteine lyase	NA	NA	NA	NA	NA
WP_000645128.1|1055648_1057019_+	carbohydrate porin	NA	NA	NA	NA	NA
WP_001187289.1|1057067_1058606_-	multidrug efflux MFS transporter permease subunit EmrB	NA	NA	NA	NA	NA
WP_001275597.1|1058622_1059795_-	multidrug efflux MFS transporter periplasmic adaptor subunit EmrA	NA	NA	NA	NA	NA
WP_000378431.1|1059921_1060452_-	transcriptional repressor MprA	NA	NA	NA	NA	NA
WP_000165770.1|1060948_1062133_-	MFS transporter	NA	NA	NA	NA	NA
WP_001216613.1|1062297_1063293_-	glycine betaine/L-proline ABC transporter substrate-binding protein ProX	NA	NA	NA	NA	NA
WP_000775015.1|1063362_1064427_-	glycine betaine/L-proline ABC transporter permease ProW	NA	NA	NA	NA	NA
WP_000777898.1|1065975_1066935_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A0M4S3B4	Mycobacterium_phage	71.8	4.0e-129
WP_000201426.1|1066945_1069090_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	V9VI16	Lactococcus_phage	49.0	3.5e-194
WP_001275403.1|1069062_1069473_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A142F1R4	Bacillus_phage	41.8	4.3e-16
WP_000028873.1|1069469_1069715_-	glutaredoxin-like protein NrdH	NA	NA	NA	NA	NA
WP_000209805.1|1069986_1070418_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_001519557.1|1071924_1072251_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_000281304.1|1072412_1072763_+	YgaC family protein	NA	NA	NA	NA	NA
WP_000492647.1|1072797_1073247_-	L-alanine exporter AlaE	NA	NA	NA	NA	NA
WP_001051100.1|1073945_1074347_+	DNA-binding protein StpA	NA	NA	NA	NA	NA
WP_001769416.1|1074436_1074616_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000022010.1|1074694_1075222_-	DUF2892 domain-containing protein	NA	NA	NA	NA	NA
WP_000137417.1|1075231_1075531_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000508175.1|1075713_1075872_+	YqaE/Pmp3 family membrane protein	NA	NA	NA	NA	NA
WP_000126152.1|1076442_1077120_-	DNA-binding transcriptional regulator CsiR	NA	NA	NA	NA	NA
WP_001095643.1|1078690_1079974_-	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	31.4	1.2e-32
WP_001176534.1|1079988_1081437_-	NADP-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000271916.1|1081458_1082727_-	L-2-hydroxyglutarate oxidase	NA	NA	NA	NA	NA
WP_000993092.1|1082752_1083730_-	carbon starvation induced protein CsiD	NA	NA	NA	NA	NA
WP_000382024.1|1084032_1085547_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_001574835.1|1085557_1085992_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_000744418.1|1086003_1086813_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_001237936.1|1086967_1087642_+	transcriptional regulator TctD	NA	NA	NA	NA	NA
WP_000872343.1|1087628_1089044_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_000947097.1|1089284_1090190_+	HoxN/HupN/NixA family nickel/cobalt transporter	NA	NA	NA	NA	NA
WP_000701509.1|1090911_1091808_-	antimicrobial resistance protein Mig-14	NA	NA	NA	NA	NA
WP_000178741.1|1092101_1093031_-	VirK family antimicrobial peptide resistance protein	NA	NA	NA	NA	NA
WP_001801692.1|1093547_1094600_+	SPI-2 type III secretion system effector PipB2	NA	NA	NA	NA	NA
WP_077905756.1|1094774_1095107_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001682025.1|1095620_1097801_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_000274373.1|1097860_1098778_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001239947.1|1098809_1100054_-	esterase family protein	NA	NA	NA	NA	NA
WP_001111827.1|1100163_1103820_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	28.6	1.0e-44
WP_001221113.1|1103900_1105016_-	salmochelin biosynthesis C-glycosyltransferase IroB	NA	NA	NA	NA	NA
WP_000905046.1|1105699_1106266_+	recombinase family protein	NA	A0A0F7LA37	Escherichia_phage	86.3	1.1e-86
WP_000046142.1|1106408_1107581_+|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	90.3	3.5e-204
WP_001207656.1|1107590_1108106_+|tail	phage major tail tube protein	tail	A0A1S6L002	Salmonella_phage	95.9	5.6e-90
WP_001280897.1|1108160_1108463_+|tail	phage tail assembly protein	tail	A0A1S6KZZ9	Salmonella_phage	89.0	7.0e-40
WP_000763311.1|1108477_1108597_+|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	87.2	2.8e-13
WP_001282793.1|1108589_1111667_+|tail	phage tail tape measure protein	tail	E5G6Q1	Salmonella_phage	63.0	0.0e+00
WP_000980381.1|1111663_1112149_+|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	80.0	2.4e-66
WP_001011760.1|1112145_1113246_+	phage late control D family protein	NA	A0A1S6KZZ5	Salmonella_phage	88.3	1.0e-176
WP_000972389.1|1113336_1113555_+	ogr/Delta-like zinc finger family protein	NA	Q53ZE7	Salmonella_virus	71.9	1.9e-18
>prophage 3
NZ_LT905064	Salmonella enterica subsp. enterica serovar Typhi isolate 1554-sc-2165329 chromosome 1	4765638	1799957	1807269	4765638	protease,integrase	Dickeya_phage(16.67%)	7	1801208:1801222	1812386:1812400
WP_001201759.1|1799957_1801076_+	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	39.8	8.1e-09
WP_000125880.1|1801072_1803019_+	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	43.1	2.0e-39
1801208:1801222	attL	GGAAAATCAACGCTG	NA	NA	NA	NA
WP_000447499.1|1803148_1803370_-	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
WP_000520789.1|1803693_1804014_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
WP_000934058.1|1804044_1806321_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.2	1.8e-164
WP_001117984.1|1806532_1806730_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001539594.1|1806891_1807269_-|integrase	integrase	integrase	A0A077KET4	Ralstonia_phage	41.0	1.2e-20
1812386:1812400	attR	CAGCGTTGATTTTCC	NA	NA	NA	NA
>prophage 4
NZ_LT905064	Salmonella enterica subsp. enterica serovar Typhi isolate 1554-sc-2165329 chromosome 1	4765638	1878406	1920464	4765638	tail,holin,terminase,plate,head	Salmonella_phage(79.25%)	60	NA	NA
WP_001262313.1|1878406_1879699_-	DUF3596 domain-containing protein	NA	S4TSP2	Salmonella_phage	99.8	5.0e-252
WP_000065276.1|1879743_1879992_-	excisionase family protein	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
WP_001754984.1|1880032_1880272_-	DUF4060 family protein	NA	S4TR31	Salmonella_phage	96.2	9.7e-37
WP_010989138.1|1880277_1881159_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A0M4R347	Salmonella_phage	93.0	1.2e-153
WP_000034527.1|1881155_1882220_-	DGQHR domain-containing protein	NA	T1SBJ4	Salmonella_phage	74.6	6.3e-152
WP_000187053.1|1882297_1882978_-	YqaJ viral recombinase family protein	NA	A0A0M3ULE0	Salmonella_phage	98.7	1.9e-130
WP_001764962.1|1882974_1883760_-	phage recombination protein Bet	NA	A0A0M4RD39	Salmonella_phage	99.6	9.7e-150
WP_000995349.1|1883765_1884062_-	host-nuclease inhibitor protein Gam	NA	A0A0M5M5Z9	Salmonella_phage	96.9	4.4e-47
WP_000186242.1|1884152_1884353_-	cell division protein FtsZ	NA	G8C7T2	Escherichia_phage	48.4	2.4e-12
WP_001009036.1|1884641_1885046_-	transcriptional regulator	NA	H6WRX4	Salmonella_phage	99.3	7.1e-72
WP_000869365.1|1885175_1885412_+	helix-turn-helix domain-containing protein	NA	H6WRX5	Salmonella_phage	98.7	1.1e-37
WP_001574095.1|1885377_1885752_+	hypothetical protein	NA	S4TTD7	Salmonella_phage	99.2	3.9e-64
WP_001681803.1|1885836_1886820_+	replication protein	NA	H6WRX7	Salmonella_phage	99.7	2.1e-162
WP_000800010.1|1886822_1887572_+	ATP-binding protein	NA	S4TNF5	Salmonella_phage	99.6	3.6e-138
WP_000113623.1|1887582_1887930_+	DUF977 family protein	NA	H6WRX9	Salmonella_phage	90.4	4.8e-53
WP_000065105.1|1887926_1888451_+	ead/Ea22-like family protein	NA	A0A220NQV2	Salmonella_phage	99.4	1.8e-91
WP_000445792.1|1888450_1888924_+	class I SAM-dependent methyltransferase	NA	H9C170	Pectobacterium_phage	80.1	1.6e-67
WP_000208074.1|1888927_1889500_+	DUF550 domain-containing protein	NA	S4TSR6	Salmonella_phage	68.0	1.3e-66
WP_000509711.1|1890345_1890525_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000963896.1|1890535_1891033_+	type II toxin-antitoxin system death-on-curing family toxin	NA	NA	NA	NA	NA
WP_001217670.1|1891217_1891457_+	DinI family protein	NA	H6WRY5	Salmonella_phage	100.0	3.9e-38
WP_000929790.1|1891791_1892394_+	DUF1367 family protein	NA	S4TTI0	Salmonella_phage	99.5	7.5e-110
WP_001096560.1|1892602_1893214_+	recombination protein NinG	NA	A0A0M4RU10	Salmonella_phage	99.5	2.5e-92
WP_001617856.1|1893210_1893357_+	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	97.9	4.3e-19
WP_001047634.1|1893346_1894144_+	antitermination protein	NA	A0A0M4S661	Salmonella_phage	99.2	3.4e-150
WP_001534733.1|1894542_1894668_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000798706.1|1894803_1895253_-	lipoprotein	NA	NA	NA	NA	NA
WP_001294876.1|1895469_1895859_+|holin	phage holin family protein	holin	K7PHB9	Enterobacterial_phage	70.2	3.1e-40
WP_000226307.1|1895845_1896127_+|holin	phage holin family protein	holin	K7PKN9	Enterobacterial_phage	80.6	2.6e-36
WP_001075998.1|1896126_1896741_+	glycoside hydrolase family 19 protein	NA	Q8HA86	Salmonella_phage	93.1	3.2e-108
WP_000495544.1|1897318_1897696_+	hypothetical protein	NA	Q6UAR9	Klebsiella_phage	68.5	4.9e-43
WP_001070544.1|1897792_1898020_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001118118.1|1898109_1898862_+	hypothetical protein	NA	A0A0M3ULJ9	Salmonella_phage	56.5	3.4e-11
WP_000204794.1|1898827_1900231_+|terminase	PBSX family phage terminase large subunit	terminase	A0A077KAW0	Edwardsiella_phage	70.1	6.5e-189
WP_000113511.1|1900230_1901700_+	DUF1073 domain-containing protein	NA	A0A0M4S6U1	Salmonella_phage	99.2	1.7e-280
WP_138010671.1|1901584_1902322_+|head	phage head morphogenesis protein	head	A0A0M4REK0	Salmonella_phage	88.1	7.8e-101
WP_000873182.1|1902336_1903569_+	DUF2213 domain-containing protein	NA	A0A0M4R5A6	Salmonella_phage	99.0	1.4e-227
WP_000128060.1|1903573_1904071_+	hypothetical protein	NA	A0A0M4QWZ6	Salmonella_phage	99.4	8.7e-88
WP_000627464.1|1904082_1905024_+	DUF2184 domain-containing protein	NA	A0A0M3ULD3	Salmonella_phage	100.0	3.1e-179
WP_001040702.1|1905065_1905434_+	hypothetical protein	NA	A0A0M4RTX5	Salmonella_phage	100.0	8.7e-61
WP_001125675.1|1905399_1905807_+	DUF4054 domain-containing protein	NA	A0A0M5M3S2	Salmonella_phage	97.8	7.1e-72
WP_000008737.1|1905803_1906358_+	hypothetical protein	NA	A0A0M4S631	Salmonella_phage	100.0	4.8e-95
WP_001142488.1|1906344_1906734_+	hypothetical protein	NA	A0A0M3ULK0	Salmonella_phage	98.4	6.0e-68
WP_000389379.1|1906708_1907272_+	hypothetical protein	NA	A0A0M4R331	Salmonella_phage	75.3	8.9e-81
WP_001135544.1|1907275_1908421_+	DUF3383 domain-containing protein	NA	A0A2H4J8G4	uncultured_Caudovirales_phage	74.5	2.2e-163
WP_000257259.1|1908432_1908873_+	DUF3277 family protein	NA	A0A2H4J619	uncultured_Caudovirales_phage	74.7	3.5e-56
WP_000389047.1|1908876_1909329_+	hypothetical protein	NA	A0A0M4S6U8	Salmonella_phage	76.6	1.9e-57
WP_000990867.1|1909506_1911459_+	hypothetical protein	NA	A0A0M4REK7	Salmonella_phage	56.0	1.8e-181
WP_000346974.1|1911458_1912109_+	hypothetical protein	NA	A0A0M3ULD5	Salmonella_phage	60.6	3.0e-56
WP_000388505.1|1912112_1912415_+	hypothetical protein	NA	A0A2H4J495	uncultured_Caudovirales_phage	57.0	2.0e-26
WP_000042301.1|1912417_1913449_+	hypothetical protein	NA	A0A2H4J1B2	uncultured_Caudovirales_phage	51.4	1.2e-96
WP_000826019.1|1913445_1913781_+	hypothetical protein	NA	A0A2H4J1A5	uncultured_Caudovirales_phage	52.2	1.1e-20
WP_000050472.1|1913975_1914707_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001144794.1|1914706_1915135_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001685627.1|1915193_1915949_+	hypothetical protein	NA	A0A0M5M1K7	Salmonella_phage	85.3	4.1e-105
WP_001270647.1|1916189_1916543_+	hypothetical protein	NA	A0A0M4R339	Salmonella_phage	98.3	3.2e-60
WP_001197092.1|1916543_1917743_+|plate	baseplate J/gp47 family protein	plate	A0A0M4RD32	Salmonella_phage	97.5	8.5e-214
WP_000049938.1|1917739_1918420_+	DUF2612 domain-containing protein	NA	A0A0M5M1K4	Salmonella_phage	98.7	6.9e-128
WP_001681975.1|1918419_1919931_+	hypothetical protein	NA	S4TP62	Salmonella_phage	59.4	1.5e-111
WP_000421106.1|1919945_1920464_+|tail	tail fiber assembly protein	tail	A0A1B0VCD0	Salmonella_phage	62.8	1.7e-46
>prophage 5
NZ_LT905064	Salmonella enterica subsp. enterica serovar Typhi isolate 1554-sc-2165329 chromosome 1	4765638	2398528	2472112	4765638	tRNA,capsid,transposase,tail,plate,protease,integrase	Burkholderia_virus(42.11%)	82	2388858:2388873	2444718:2444733
2388858:2388873	attL	GATTTTACCTGCCTTT	NA	NA	NA	NA
WP_000502118.1|2398528_2398987_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000431187.1|2398943_2399126_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001766314.1|2399519_2399771_+	acid shock protein	NA	NA	NA	NA	NA
WP_000549642.1|2400039_2400861_+|protease	serine protease	protease	NA	NA	NA	NA
WP_001183821.1|2400895_2401225_-	multidrug/spermidine efflux SMR transporter subunit MdtI	NA	NA	NA	NA	NA
WP_000500278.1|2401211_2401574_-	multidrug/spermidine efflux SMR transporter subunit MdtJ	NA	NA	NA	NA	NA
WP_001118268.1|2401990_2403025_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000014056.1|2403199_2404588_-	Re/Si-specific NAD(P)(+) transhydrogenase subunit beta	NA	NA	NA	NA	NA
WP_001219360.1|2404598_2406128_-	Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_000769298.1|2406654_2407599_+	DUF1471 domain-containing protein	NA	NA	NA	NA	NA
WP_001281695.1|2407780_2408170_-	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	54.2	4.5e-31
WP_001315282.1|2408141_2408591_-	regulatory protein GemA	NA	A4JWM5	Burkholderia_virus	46.6	9.4e-25
WP_010989166.1|2408583_2408799_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000631816.1|2408788_2409019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000131941.1|2409015_2409699_-	DUF2786 domain-containing protein	NA	A0A2P9JZH4	Alteromonadaceae_phage	37.3	2.6e-34
WP_153781233.1|2409695_2409896_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001315283.1|2409903_2410287_-	hypothetical protein	NA	K7PJQ4	Enterobacteria_phage	58.9	2.3e-27
WP_000197790.1|2410283_2410586_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000632575.1|2410595_2410868_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001140134.1|2411156_2411687_-	host-nuclease inhibitor Gam family protein	NA	L7P7T1	Pseudomonas_phage	66.1	3.4e-58
WP_000843446.1|2411714_2411984_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000960673.1|2411986_2413153_-	AAA family ATPase	NA	A4JWN1	Burkholderia_virus	59.7	3.3e-122
WP_000990529.1|2413163_2414933_-|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	Q6QIE0	Burkholderia_phage	68.5	2.8e-229
WP_000567456.1|2414936_2415101_-	hypothetical protein	NA	NA	NA	NA	NA
WP_144079282.1|2415110_2415494_-	hypothetical protein	NA	A4JWN3	Burkholderia_virus	58.9	1.7e-27
WP_100208317.1|2415537_2416134_+	nucleoid-associated protein	NA	NA	NA	NA	NA
WP_000793143.1|2416377_2416728_+	membrane protein	NA	A4JWP3	Burkholderia_virus	53.0	4.5e-22
WP_001104436.1|2416730_2417459_+	transglycosylase SLT domain-containing protein	NA	Q5ZQZ1	Pseudomonas_phage	57.4	2.7e-61
WP_000264664.1|2417442_2418093_+	lipoprotein	NA	Q5ZQY9	Pseudomonas_phage	32.9	8.1e-09
WP_000175097.1|2418089_2418416_+	membrane protein	NA	Q6QIC4	Burkholderia_phage	49.5	9.6e-19
WP_000227700.1|2418415_2418727_+	hypothetical protein	NA	A0A0S4L0A3	Pseudomonas_phage	62.6	9.4e-32
WP_000124060.1|2418726_2419272_+	DUF3486 family protein	NA	A4JWJ3	Burkholderia_virus	67.6	9.3e-59
WP_170825686.1|2419322_2420864_+	hypothetical protein	NA	A4JWJ4	Burkholderia_virus	62.6	9.0e-184
WP_000090679.1|2420863_2422360_+	DUF935 domain-containing protein	NA	A4JWJ5	Burkholderia_virus	59.6	8.0e-169
WP_000117561.1|2422340_2423162_+|capsid	minor capsid protein	capsid	A4JWJ6	Burkholderia_virus	61.2	5.3e-98
WP_000135517.1|2423164_2423623_+	phage virion morphogenesis protein	NA	Q6QIB8	Burkholderia_phage	44.8	1.5e-30
WP_001273072.1|2423837_2424953_+	hypothetical protein	NA	A4JWJ9	Burkholderia_virus	51.1	7.9e-97
WP_001286905.1|2424967_2425921_+	hypothetical protein	NA	A4JWK0	Burkholderia_virus	44.5	5.2e-65
WP_000537457.1|2425930_2426269_+	DUF2190 family protein	NA	NA	NA	NA	NA
WP_000271668.1|2426270_2426717_+	DUF1320 domain-containing protein	NA	A4JWK2	Burkholderia_virus	52.3	2.2e-34
WP_001101804.1|2426716_2427181_+	hypothetical protein	NA	Q6QIB2	Burkholderia_phage	51.7	9.1e-39
WP_000666498.1|2427180_2427432_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000729859.1|2427421_2428849_+|tail	phage tail sheath subtilisin-like domain-containing protein	tail	A4JWK5	Burkholderia_virus	77.4	3.7e-216
WP_162828734.1|2428845_2429370_+|tail	phage major tail tube protein	tail	A4JWK6	Burkholderia_virus	67.2	4.7e-68
WP_000110118.1|2429372_2429654_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000084228.1|2429751_2430087_+|tail	phage tail assembly protein	tail	NA	NA	NA	NA
WP_001148841.1|2430031_2430169_+|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
WP_000135574.1|2430262_2432728_+|tail	phage tail tape measure protein	tail	A4JWL0	Burkholderia_virus	42.6	2.2e-168
WP_000458383.1|2432727_2433612_+|tail	phage tail protein	tail	A4JWL1	Burkholderia_virus	47.0	7.5e-50
WP_000478221.1|2433611_2433824_+|tail	tail protein X	tail	Q6QIA3	Burkholderia_phage	60.0	2.4e-18
WP_000808000.1|2433811_2434966_+	phage late control D family protein	NA	Q6QIA2	Burkholderia_phage	47.1	4.7e-84
WP_000148263.1|2434962_2435490_+|plate	phage baseplate assembly protein V	plate	Q6QIA1	Burkholderia_phage	46.5	1.5e-21
WP_000859114.1|2435546_2435894_+	GPW/gp25 family protein	NA	Q6QIA0	Burkholderia_phage	60.6	8.6e-34
WP_001219103.1|2435884_2436988_+|plate	baseplate J/gp47 family protein	plate	Q6QI99	Burkholderia_phage	54.3	5.4e-106
WP_000852584.1|2436980_2437559_+|tail	phage tail protein I	tail	A4JWL7	Burkholderia_virus	65.8	6.4e-66
WP_001057643.1|2439089_2439707_+|tail	tail fiber assembly protein	tail	Q9MCR5	Enterobacteria_phage	59.9	5.8e-65
WP_057483654.1|2440672_2441128_-|tail	tail fiber protein	tail	Q9MCR6	Enterobacteria_phage	49.4	1.2e-32
WP_001165548.1|2441217_2441790_+	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	84.7	8.8e-84
WP_000412353.1|2442070_2443453_+	amino acid permease	NA	NA	NA	NA	NA
WP_000524877.1|2443514_2443850_-	GlpM family protein	NA	NA	NA	NA	NA
WP_000824321.1|2445186_2446338_+	porin OmpS2	NA	Q1MVN1	Enterobacteria_phage	59.1	3.2e-117
2444718:2444733	attR	GATTTTACCTGCCTTT	NA	NA	NA	NA
WP_001681605.1|2448306_2449608_+	two-component system sensor histidine kinase RstB	NA	W8CYF6	Bacillus_phage	22.7	5.7e-14
WP_000092483.1|2449683_2450613_+	DNA replication terminus site-binding protein	NA	NA	NA	NA	NA
WP_000259129.1|2450609_2452013_-	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_000066606.1|2452180_2453827_-	class I fumarate hydratase	NA	NA	NA	NA	NA
WP_001170615.1|2454026_2455202_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_000753325.1|2455304_2456813_+	YdgA family protein	NA	NA	NA	NA	NA
WP_000565566.1|2457518_2458520_+	adenosine deaminase	NA	NA	NA	NA	NA
WP_000998242.1|2458593_2459634_-	oxidoreductase	NA	NA	NA	NA	NA
WP_031608772.1|2459841_2459967_+	division septum protein Blr	NA	NA	NA	NA	NA
WP_000217946.1|2460265_2460481_+	transcription modulator YdgT	NA	NA	NA	NA	NA
WP_000214061.1|2460569_2461010_+	DUF2569 domain-containing protein	NA	NA	NA	NA	NA
WP_000133179.1|2461086_2461668_+	electron transport complex subunit RsxA	NA	NA	NA	NA	NA
WP_001092600.1|2461667_2462246_+	electron transport complex subunit RsxB	NA	NA	NA	NA	NA
WP_000915581.1|2462238_2464260_+	electron transport complex subunit RsxC	NA	NA	NA	NA	NA
WP_000231887.1|2464260_2465319_+	electron transport complex subunit RsxD	NA	NA	NA	NA	NA
WP_000920820.1|2465322_2465943_+	electron transport complex subunit RsxG	NA	NA	NA	NA	NA
WP_001289628.1|2465945_2466638_+	electron transport complex subunit E	NA	NA	NA	NA	NA
WP_001030324.1|2466637_2467273_+	endonuclease III	NA	NA	NA	NA	NA
WP_000100913.1|2467873_2469379_+	dipeptide/tripeptide permease DtpA	NA	NA	NA	NA	NA
WP_000765713.1|2469483_2470089_+	glutathione transferase GstA	NA	NA	NA	NA	NA
WP_000168626.1|2470837_2472112_-|tRNA	tyrosine--tRNA ligase	tRNA	K4F5T3	Cronobacter_phage	42.1	1.6e-85
>prophage 6
NZ_LT905064	Salmonella enterica subsp. enterica serovar Typhi isolate 1554-sc-2165329 chromosome 1	4765638	2861407	2868641	4765638		Morganella_phage(33.33%)	8	NA	NA
WP_001157299.1|2861407_2862838_-	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
WP_000377043.1|2862911_2863607_-	phosphohydrolase	NA	S4W232	Pandoravirus	27.5	2.1e-07
WP_000107435.1|2863686_2863998_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001080666.1|2864648_2865833_+	porin OmpS1	NA	Q1MVN1	Enterobacteria_phage	56.4	1.4e-107
WP_024131163.1|2866093_2866282_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000208507.1|2866292_2866505_-	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	70.0	1.5e-20
WP_000457648.1|2866950_2868219_-	Y-family DNA polymerase	NA	I6RSM4	Salmonella_phage	91.2	3.3e-224
WP_000394197.1|2868221_2868641_-	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
>prophage 7
NZ_LT905064	Salmonella enterica subsp. enterica serovar Typhi isolate 1554-sc-2165329 chromosome 1	4765638	2958127	2968634	4765638		Enterobacteria_phage(37.5%)	10	NA	NA
WP_000126347.1|2958127_2959441_-	lipopolysaccharide biosynthesis protein RfbH	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	7.0e-52
WP_000565909.1|2959467_2960547_-	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.1	1.3e-16
WP_000648783.1|2960551_2961325_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_000018220.1|2961340_2962315_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_000973711.1|2962320_2962872_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.6	7.7e-53
WP_000857536.1|2962872_2963751_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	64.8	2.3e-107
WP_001023656.1|2963798_2964698_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.3	7.9e-31
WP_000697846.1|2964697_2965783_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.6e-102
WP_000981469.1|2966159_2967053_-	GalU regulator GalF	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
WP_001111852.1|2967230_2968634_-	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	26.5	1.1e-21
>prophage 8
NZ_LT905064	Salmonella enterica subsp. enterica serovar Typhi isolate 1554-sc-2165329 chromosome 1	4765638	3044525	3053696	4765638	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
WP_000195338.1|3044525_3046559_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	26.9	6.1e-55
WP_000703137.1|3046799_3047258_+	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
WP_001197951.1|3047429_3047960_+	YehR family lipoprotein	NA	NA	NA	NA	NA
WP_000950413.1|3048016_3048484_-	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
WP_000598632.1|3048530_3049250_-	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_000272853.1|3049246_3050932_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.1	1.1e-278
WP_001240415.1|3051154_3051886_+	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
WP_001261696.1|3051945_3052053_+	protein YohO	NA	NA	NA	NA	NA
WP_000824854.1|3052033_3052765_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000569166.1|3052748_3053696_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	1.7e-23
>prophage 9
NZ_LT905064	Salmonella enterica subsp. enterica serovar Typhi isolate 1554-sc-2165329 chromosome 1	4765638	3288202	3294233	4765638		Salmonella_virus(50.0%)	6	NA	NA
WP_000377769.1|3288202_3289144_+	formate/nitrite transporter family protein	NA	E7DYY8	Enterobacteria_phage	88.2	2.4e-147
WP_001682026.1|3290386_3290776_+	GtrA family protein	NA	A0A192Y6N5	Salmonella_phage	91.5	6.9e-56
WP_000703599.1|3290744_3290999_+	glycosyltransferase	NA	A8CG95	Salmonella_phage	79.5	3.1e-25
WP_000400611.1|3291015_3292938_+	acyltransferase	NA	A0A1R3Y5Q6	Salmonella_virus	77.2	5.6e-300
WP_106417236.1|3293927_3294071_-	hypothetical protein	NA	A0A1R3Y5S2	Salmonella_virus	87.8	9.0e-14
WP_106417237.1|3294086_3294233_-	hypothetical protein	NA	A0A1R3Y5S2	Salmonella_virus	73.9	1.1e-14
>prophage 10
NZ_LT905064	Salmonella enterica subsp. enterica serovar Typhi isolate 1554-sc-2165329 chromosome 1	4765638	3952619	3960290	4765638	integrase	Enterobacteria_phage(33.33%)	7	3947096:3947109	3958499:3958512
3947096:3947109	attL	CGAAGGCCGGACTC	NA	NA	NA	NA
WP_000468230.1|3952619_3952859_+	ogr/Delta-like zinc finger family protein	NA	Q7M294	Enterobacteria_phage	60.5	3.7e-20
WP_000214423.1|3952874_3953441_+	Polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	64.9	1.8e-60
WP_000493739.1|3953716_3954880_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000700163.1|3954869_3955928_+	serine/threonine protein kinase	NA	G9BWE0	Planktothrix_phage	44.7	4.9e-56
WP_000573583.1|3955924_3957001_+	serine/threonine protein kinase	NA	A0A2H4UU60	Bodo_saltans_virus	28.2	7.8e-17
WP_000772672.1|3957063_3958329_-|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	B7SYF8	Stenotrophomonas_phage	41.0	1.6e-74
WP_000152561.1|3958799_3960290_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	36.1	4.0e-11
3958499:3958512	attR	CGAAGGCCGGACTC	NA	NA	NA	NA
>prophage 11
NZ_LT905064	Salmonella enterica subsp. enterica serovar Typhi isolate 1554-sc-2165329 chromosome 1	4765638	4099253	4178179	4765638	portal,capsid,tail,lysis,terminase,plate,head,integrase	Salmonella_phage(82.98%)	87	4106406:4106421	4179273:4179288
WP_000954536.1|4099253_4100513_+|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	B7SYF8	Stenotrophomonas_phage	41.7	3.2e-78
WP_000975154.1|4100823_4102107_+	SH3 domain-containing protein	NA	NA	NA	NA	NA
WP_000511749.1|4103087_4103870_-|integrase	integrase domain-containing protein	integrase	NA	NA	NA	NA
WP_162009227.1|4104139_4104334_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193665.1|4104726_4104948_-	helix-turn-helix domain-containing protein	NA	A0A2I7S995	Vibrio_phage	58.3	4.6e-17
WP_000246267.1|4104944_4105406_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010989301.1|4105952_4107626_+	hypothetical protein	NA	NA	NA	NA	NA
4106406:4106421	attL	GAAGAAGACTTCTTTG	NA	NA	NA	NA
WP_010989300.1|4107706_4109992_+	hypothetical protein	NA	NA	NA	NA	NA
WP_024131240.1|4110295_4110547_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000434168.1|4110628_4111081_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000622308.1|4111260_4111749_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_001143724.1|4111745_4112039_-	DUF1778 domain-containing protein	NA	NA	NA	NA	NA
WP_000449622.1|4112465_4113479_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_000488995.1|4113642_4115232_-	TraI domain-containing protein	NA	NA	NA	NA	NA
WP_001120833.1|4115215_4116727_-	ATP-dependent helicase	NA	A0A126DN25	Acinetobacter_phage	29.0	2.0e-42
WP_001210944.1|4117580_4118120_+	Vi polysaccharide biosynthesis regulator TviA	NA	NA	NA	NA	NA
WP_000466893.1|4118364_4119642_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	M1HYW7	Paramecium_bursaria_Chlorella_virus	26.7	1.3e-21
WP_000127915.1|4119644_4120691_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L0I7	Tupanvirus	45.0	1.4e-74
WP_010989299.1|4120714_4123210_+	Vi polysaccharide biosynthesis protein TviD	NA	NA	NA	NA	NA
WP_000632616.1|4123209_4124946_+	Vi polysaccharide biosynthesis glycosyltransferase TviE	NA	NA	NA	NA	NA
WP_000720235.1|4124990_4126058_+	Vi polysaccharide ABC transporter protein VexA	NA	NA	NA	NA	NA
WP_001023498.1|4126067_4126862_+	Vi polysaccharide ABC transporter inner membrane protein VexB	NA	NA	NA	NA	NA
WP_000467404.1|4126887_4127583_+	Vi polysaccharide ABC transporter ATP-binding protein VexC	NA	NA	NA	NA	NA
WP_000431675.1|4127605_4128910_+	Vi polysaccharide ABC transporter inner membrane protein VexD	NA	NA	NA	NA	NA
WP_000052242.1|4128929_4130900_+	Vi polysaccharide transport protein VexE	NA	NA	NA	NA	NA
WP_000354257.1|4131201_4131948_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_001681808.1|4131947_4132838_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_001681810.1|4132848_4133106_-	YjhX family toxin	NA	NA	NA	NA	NA
WP_000027757.1|4134212_4135238_-|integrase	site-specific integrase	integrase	A0A1S6L016	Salmonella_phage	98.2	2.7e-200
WP_000052560.1|4135241_4135874_-	helix-turn-helix domain-containing protein	NA	A0A1S6KZZ7	Salmonella_phage	58.6	1.4e-66
WP_000102106.1|4135990_4136233_+	Rha family transcriptional regulator	NA	A0A1S6KZZ6	Salmonella_phage	98.8	2.3e-38
WP_000460852.1|4136265_4136775_+	phage regulatory CII family protein	NA	A0A1S6L008	Salmonella_phage	94.1	1.3e-83
WP_000956167.1|4136782_4136983_+	DUF2724 domain-containing protein	NA	A0A1S6L005	Salmonella_phage	97.0	4.6e-32
WP_000963479.1|4136946_4137288_+	DUF5347 domain-containing protein	NA	A0A1S6L019	Salmonella_phage	99.1	4.6e-56
WP_001244240.1|4137355_4137589_+	DUF2732 domain-containing protein	NA	A0A1S6L021	Salmonella_phage	84.4	9.8e-26
WP_000785510.1|4137588_4137816_+	TraR/DksA family transcriptional regulator	NA	A0A1S6L007	Salmonella_phage	94.7	1.0e-35
WP_001090717.1|4137812_4138397_+	3'-5' exonuclease	NA	A0A1S6L012	Salmonella_phage	73.7	1.1e-76
WP_000104130.1|4138393_4139254_+	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	81.8	3.4e-132
WP_001154438.1|4141807_4141996_+	hypothetical protein	NA	A0A1S6L006	Salmonella_phage	96.8	7.9e-26
WP_001217561.1|4142007_4142241_+	DinI family protein	NA	A0A1S6L014	Salmonella_phage	92.2	2.2e-33
WP_000835188.1|4142336_4142555_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000829584.1|4142564_4143629_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000789323.1|4143625_4144690_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000080839.1|4144709_4145405_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001681813.1|4145453_4146497_-|portal	phage portal protein	portal	A0A1S6KZW5	Salmonella_phage	86.6	2.1e-176
WP_001098453.1|4146496_4148263_-|terminase	terminase ATPase subunit family protein	terminase	A0A1S6KZW3	Salmonella_phage	96.4	0.0e+00
WP_000216272.1|4148405_4149239_+|capsid	GPO family capsid scaffolding protein	capsid	E5G6M5	Salmonella_phage	87.4	6.1e-126
WP_000730751.1|4149255_4150320_+|capsid	phage major capsid protein, P2 family	capsid	A0A1S6KZZ3	Salmonella_phage	98.3	1.3e-194
WP_000059175.1|4150323_4150974_+|terminase	terminase endonuclease subunit	terminase	E5G6M7	Salmonella_phage	99.5	2.4e-114
WP_000673540.1|4151067_4151532_+|head	head completion/stabilization protein	head	A0A1S6KZW8	Salmonella_phage	98.1	2.4e-84
WP_000868184.1|4151531_4151735_+|tail	tail protein X	tail	E5G6M9	Salmonella_phage	100.0	3.8e-34
WP_000171566.1|4151738_4151954_+	hypothetical protein	NA	E5G6N0	Salmonella_phage	98.6	3.8e-32
WP_001097942.1|4151934_4152444_+	lysozyme	NA	A0A1S6KZY9	Salmonella_phage	97.0	1.3e-91
WP_000731034.1|4152448_4152826_+	hypothetical protein	NA	A0A1S6KZZ2	Salmonella_phage	99.2	1.5e-60
WP_024131238.1|4152822_4153251_+|lysis	LysB family phage lysis regulatory protein	lysis	A0A1S6KZX8	Salmonella_phage	97.9	3.3e-67
WP_001039966.1|4153346_4153778_+|tail	phage tail protein	tail	A0A1S6KZY0	Salmonella_phage	98.6	2.5e-75
WP_000343944.1|4153770_4154217_+	phage virion morphogenesis protein	NA	A0A1S6L001	Salmonella_phage	90.4	2.2e-66
WP_000993749.1|4154285_4154864_+|plate	phage baseplate assembly protein V	plate	E5G6N6	Salmonella_phage	99.5	3.9e-108
WP_000177408.1|4154860_4155220_+	GPW/gp25 family protein	NA	A0A1S6KZZ4	Salmonella_phage	96.6	6.8e-58
WP_000268327.1|4155206_4156115_+|plate	baseplate assembly protein	plate	E5G6N8	Salmonella_phage	97.0	5.2e-155
WP_001086816.1|4156107_4156713_+|tail	phage tail protein I	tail	A0A1S6L000	Salmonella_phage	92.0	2.0e-110
WP_000104806.1|4156709_4158329_+|tail	phage tail protein	tail	E5G6P0	Salmonella_phage	90.9	2.7e-154
WP_000006337.1|4158335_4158743_+|tail	tail fiber assembly protein	tail	A0A1B0V844	Salmonella_phage	84.2	4.1e-59
WP_000161708.1|4158940_4159663_-	SPI-1 type III secretion system guanine nucleotide exchange factor SopE	NA	NA	NA	NA	NA
WP_000388790.1|4159876_4160095_+	Hin recombinase	NA	A0A1S6L009	Salmonella_phage	90.3	1.4e-29
WP_000046101.1|4160197_4161370_+|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	99.5	9.8e-223
WP_001207653.1|4161379_4161895_+|tail	phage major tail tube protein	tail	E5G6P8	Salmonella_phage	99.4	2.7e-92
WP_001280965.1|4161949_4162252_+|tail	phage tail assembly protein	tail	E5G6P9	Salmonella_phage	93.9	3.3e-42
WP_000763315.1|4162266_4162386_+|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	94.9	1.2e-14
WP_161976233.1|4162612_4165159_+|tail	phage tail tape measure protein	tail	A0A2H4JGB2	uncultured_Caudovirales_phage	42.7	1.2e-113
WP_000980405.1|4165158_4165644_+|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	93.2	9.4e-71
WP_001011750.1|4165640_4166741_+	phage late control D family protein	NA	E5G6Q3	Salmonella_phage	92.1	7.9e-190
WP_001775272.1|4166808_4167027_+	ogr/Delta-like zinc finger family protein	NA	E5G6Q4	Salmonella_phage	75.0	4.9e-27
WP_001039750.1|4167113_4167491_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000457555.1|4167710_4168985_+	Y-family DNA polymerase	NA	F1C5A5	Cronobacter_phage	62.0	7.5e-152
WP_001222413.1|4169116_4169386_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000911568.1|4169485_4169812_-	DUF3085 domain-containing protein	NA	NA	NA	NA	NA
WP_000022216.1|4169886_4170786_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000881183.1|4170859_4171768_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001097965.1|4171839_4173789_-	DUF1738 domain-containing protein	NA	A0A2K9V411	Faecalibacterium_phage	38.3	5.9e-31
WP_000115421.1|4173877_4174336_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000968700.1|4174413_4174710_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000979718.1|4174706_4175159_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000018145.1|4175176_4175386_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001103837.1|4175756_4176137_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001020123.1|4176232_4176535_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000907593.1|4177258_4178179_-|integrase	integrase domain-containing protein	integrase	NA	NA	NA	NA
4179273:4179288	attR	GAAGAAGACTTCTTTG	NA	NA	NA	NA
>prophage 12
NZ_LT905064	Salmonella enterica subsp. enterica serovar Typhi isolate 1554-sc-2165329 chromosome 1	4765638	4473643	4563574	4765638	portal,capsid,tRNA,transposase,tail,lysis,terminase,plate,protease,head,integrase	Salmonella_phage(71.74%)	83	4468608:4468622	4480773:4480787
4468608:4468622	attL	CGAATTTCTTTTTCA	NA	NA	NA	NA
WP_001012560.1|4473643_4475290_-	acetolactate synthase 2 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	31.5	9.0e-65
WP_001311244.1|4475429_4475528_-	ilv operon leader peptide	NA	NA	NA	NA	NA
WP_000290950.1|4476153_4477206_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A218M4I3	Erwinia_phage	57.3	3.6e-107
WP_000900883.1|4477394_4477586_-	hypothetical protein	NA	A0A0R6PIH8	Moraxella_phage	65.9	6.8e-09
WP_001047327.1|4477601_4478171_-	phage repressor protein CI	NA	A0A1S6KZZ7	Salmonella_phage	43.4	2.5e-38
WP_001247706.1|4478296_4478518_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000460893.1|4478550_4479060_+	phage regulatory CII family protein	NA	E5G6L3	Salmonella_phage	98.8	5.8e-87
WP_000956176.1|4479067_4479364_+	DUF2724 domain-containing protein	NA	E5G6L4	Salmonella_phage	90.4	4.9e-22
WP_000996717.1|4479481_4479823_+	DUF5347 domain-containing protein	NA	E5G6L5	Salmonella_phage	98.2	1.7e-55
WP_001244218.1|4479890_4480124_+	DUF2732 domain-containing protein	NA	E5G6L6	Salmonella_phage	94.8	2.0e-31
WP_000752613.1|4480123_4480351_+	TraR/DksA family transcriptional regulator	NA	E5G6L7	Salmonella_phage	100.0	2.7e-36
WP_000104152.1|4480347_4481205_+	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	97.2	3.5e-161
4480773:4480787	attR	TGAAAAAGAAATTCG	NA	NA	NA	NA
WP_000017503.1|4481201_4483616_+	replication endonuclease	NA	E5G6L9	Salmonella_phage	97.5	0.0e+00
WP_001580533.1|4483769_4483958_+	hypothetical protein	NA	E5G6M0	Salmonella_phage	95.2	7.9e-26
WP_000822803.1|4484025_4484325_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001251692.1|4484433_4485312_-	hypothetical protein	NA	A0A2H4J8D6	uncultured_Caudovirales_phage	49.4	6.1e-52
WP_001146827.1|4485925_4486840_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000185757.1|4486836_4487577_+	restriction endonuclease	NA	NA	NA	NA	NA
WP_000518064.1|4487611_4488649_-|portal	phage portal protein	portal	A0A1S6KZW5	Salmonella_phage	89.5	1.3e-173
WP_001098422.1|4488648_4490415_-|terminase	terminase ATPase subunit family protein	terminase	A0A1S6KZW3	Salmonella_phage	99.5	0.0e+00
WP_000216244.1|4490557_4491391_+|capsid	GPO family capsid scaffolding protein	capsid	A0A1S6KZW9	Salmonella_phage	90.6	1.5e-121
WP_000742518.1|4491407_4492466_+|capsid	phage major capsid protein, P2 family	capsid	E5G6M6	Salmonella_phage	93.1	1.4e-180
WP_000059191.1|4492469_4493120_+|terminase	terminase endonuclease subunit	terminase	E5G6M7	Salmonella_phage	96.3	8.7e-112
WP_000673504.1|4493215_4493680_+|head	head completion/stabilization protein	head	A0A1S6KZW8	Salmonella_phage	89.0	1.4e-76
WP_000868175.1|4493679_4493883_+|tail	tail protein X	tail	E5G6M9	Salmonella_phage	92.5	1.4e-31
WP_000171568.1|4493886_4494102_+	hypothetical protein	NA	E5G6N0	Salmonella_phage	80.3	1.8e-26
WP_001069905.1|4494082_4494595_+	lysozyme	NA	E5G6N1	Salmonella_phage	92.3	3.1e-88
WP_000727853.1|4494596_4494974_+	hypothetical protein	NA	A0A1S6KZZ2	Salmonella_phage	40.0	2.3e-16
WP_001080928.1|4494970_4495399_+|lysis	LysB family phage lysis regulatory protein	lysis	E5G6N2	Salmonella_phage	77.3	2.2e-47
WP_001039939.1|4495494_4495926_+|tail	phage tail protein	tail	E5G6N3	Salmonella_phage	95.1	1.5e-72
WP_000829146.1|4495918_4496365_+	phage virion morphogenesis protein	NA	A0A1S6L001	Salmonella_phage	85.6	6.6e-63
WP_000993754.1|4496433_4497012_+|plate	phage baseplate assembly protein V	plate	A0A1S6KZX7	Salmonella_phage	86.5	5.5e-94
WP_000177595.1|4497008_4497368_+	GPW/gp25 family protein	NA	A0A1S6KZZ4	Salmonella_phage	84.9	6.1e-51
WP_000268271.1|4497354_4498263_+|plate	baseplate assembly protein	plate	A0A1S6KZY6	Salmonella_phage	89.7	1.3e-142
WP_001086816.1|4498255_4498861_+|tail	phage tail protein I	tail	A0A1S6L000	Salmonella_phage	92.0	2.0e-110
WP_000104804.1|4498857_4500372_+|tail	phage tail protein	tail	M1TAS6	Escherichia_phage	73.2	6.8e-200
WP_000805568.1|4500371_4500965_+|tail	tail fiber assembly protein	tail	M1SV83	Escherichia_phage	64.3	9.2e-60
WP_001174915.1|4500936_4501377_-|tail	tail fiber assembly protein	tail	A0A0F7LDZ0	Escherichia_phage	68.0	3.1e-52
WP_072075000.1|4501379_4501778_-|tail	phage tail protein	tail	A0A0F7LBW5	Escherichia_phage	37.5	1.3e-12
WP_000905046.1|4501805_4502372_+	recombinase family protein	NA	A0A0F7LA37	Escherichia_phage	86.3	1.1e-86
WP_000046142.1|4502514_4503687_+|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	90.3	3.5e-204
WP_001207656.1|4503696_4504212_+|tail	phage major tail tube protein	tail	A0A1S6L002	Salmonella_phage	95.9	5.6e-90
WP_001280897.1|4504266_4504569_+|tail	phage tail assembly protein	tail	A0A1S6KZZ9	Salmonella_phage	89.0	7.0e-40
WP_000763311.1|4504583_4504703_+|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	87.2	2.8e-13
WP_001282793.1|4504695_4507773_+|tail	phage tail tape measure protein	tail	E5G6Q1	Salmonella_phage	63.0	0.0e+00
WP_000980381.1|4507769_4508255_+|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	80.0	2.4e-66
WP_001011760.1|4508251_4509352_+	phage late control D family protein	NA	A0A1S6KZZ5	Salmonella_phage	88.3	1.0e-176
WP_000972391.1|4509442_4509661_+	ogr/Delta-like zinc finger family protein	NA	Q53ZE7	Salmonella_virus	69.0	7.5e-20
WP_000502114.1|4511242_4511701_+|transposase	IS200/IS605 family transposase	transposase	NA	NA	NA	NA
WP_000840996.1|4511808_4512147_-	macrodomain Ori organization protein MaoP	NA	NA	NA	NA	NA
WP_001541181.1|4512253_4513102_+	HTH-type transcriptional regulator HdfR	NA	NA	NA	NA	NA
WP_000201804.1|4519081_4519933_-	glutamate racemase	NA	NA	NA	NA	NA
WP_000591414.1|4519877_4521722_-	TonB-dependent vitamin B12 receptor BtuB	NA	A0A0P0I887	Acinetobacter_phage	30.0	2.2e-11
WP_000186987.1|4522095_4523196_+|tRNA	tRNA (uridine(54)-C5)-methyltransferase TrmA	tRNA	NA	NA	NA	NA
WP_000813838.1|4523242_4523602_-	YijD family membrane protein	NA	NA	NA	NA	NA
WP_000971958.1|4523617_4524253_-	HTH-type transcriptional repressor FabR	NA	NA	NA	NA	NA
WP_001120789.1|4524451_4525852_+	Si-specific NAD(P)(+) transhydrogenase	NA	NA	NA	NA	NA
WP_001025919.1|4525834_4526752_-	DNA-binding transcriptional regulator OxyR	NA	NA	NA	NA	NA
WP_001230038.1|4527035_4528412_-	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_001575262.1|4528529_4529306_-	acetylglutamate kinase	NA	NA	NA	NA	NA
WP_000935332.1|4529313_4530318_-	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA	NA
WP_000800208.1|4530406_4531558_+	acetylornithine deacetylase	NA	NA	NA	NA	NA
WP_001005544.1|4531926_4534578_+	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_001192092.1|4534779_4536513_+	phosphoethanolamine transferase CptA	NA	NA	NA	NA	NA
WP_000274601.1|4536673_4537510_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000424865.1|4537764_4538427_+	fructose-6-phosphate aldolase	NA	M4SLG0	Cyanophage	34.1	1.2e-28
WP_000374033.1|4538438_4539542_+	glycerol dehydrogenase	NA	NA	NA	NA	NA
WP_000108110.1|4539648_4541829_-	catalase/peroxidase HPI	NA	NA	NA	NA	NA
WP_000007507.1|4541993_4542884_-	methylenetetrahydrofolate reductase	NA	NA	NA	NA	NA
WP_001090459.1|4543162_4544644_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_000976816.1|4544588_4545695_-	alanine racemase	NA	NA	NA	NA	NA
WP_000609328.1|4545691_4546930_-	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	53.4	5.9e-101
WP_000865256.1|4547194_4548751_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_001134817.1|4548886_4550011_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000110811.1|4550737_4553170_-	bifunctional aspartate kinase/homoserine dehydrogenase II	NA	NA	NA	NA	NA
WP_000197208.1|4553172_4554333_-	cystathionine gamma-synthase	NA	NA	NA	NA	NA
WP_000852811.1|4554597_4554915_+	met regulon transcriptional regulator MetJ	NA	NA	NA	NA	NA
WP_000792797.1|4557360_4558023_+	TIGR02117 family protein	NA	NA	NA	NA	NA
WP_000715284.1|4558068_4558281_-	50S ribosomal protein L31	NA	NA	NA	NA	NA
WP_000109394.1|4558484_4560683_+	primosomal protein N'	NA	NA	NA	NA	NA
WP_000841337.1|4560837_4561863_+	DNA-binding transcriptional regulator CytR	NA	NA	NA	NA	NA
WP_000068796.1|4561956_4562952_+	cell division protein FtsN	NA	NA	NA	NA	NA
WP_000208240.1|4563043_4563574_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
