assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900205745.1_Lf_IMDO_130101	NZ_LT906621	Limosilactobacillus fermentum strain IMDO 130101 chromosome I	1	289106-289451	1	CRT	no	cas3	cas14j,cas3,DEDDh,cas9,cas1,cas2,csn2,WYL,DinG,cas6e,cas5,cas7,cse2gr11,cas8e,csa3	Unclear	AAAAGGGTGGNGAAGCCACTGC	22	0	0	NA	NA	NA	5	5	Unclear	cas14j,cas3,DEDDh,cas9,cas1,cas2,csn2,WYL,DinG,cas6e,cas5,cas7,cse2gr11,cas8e,csa3	NA,NA|63aa|down_4|NZ_LT906621.1_294707_294896_+	cas3|1180aa|up_9|NZ_LT906621.1_269239_272779_+	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]	NA|91aa|up_8|NZ_LT906621.1_272778_273051_+	COG1188, COG1188, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]	NA|119aa|up_7|NZ_LT906621.1_273139_273496_+	pfam04977, DivIC, Septum formation initiator	NA|169aa|up_6|NZ_LT906621.1_273625_274132_+	PRK08582, PRK08582, RNA-binding protein S1	NA|450aa|up_5|NZ_LT906621.1_274131_275481_+	cd01992, PP-ATPase, N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]	NA|183aa|up_4|NZ_LT906621.1_275497_276046_+	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]	NA|722aa|up_3|NZ_LT906621.1_276129_278295_+	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH	NA|294aa|up_2|NZ_LT906621.1_278371_279253_+	PRK00114, hslO, Hsp33 family molecular chaperone HslO	NA|334aa|up_1|NZ_LT906621.1_279341_280343_+	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|498aa|up_0|NZ_LT906621.1_280358_281852_+	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|291aa|down_0|NZ_LT906621.1_289647_290520_+	cd05355, SDR_c1, classical (c) SDR, subgroup 1	NA|120aa|down_1|NZ_LT906621.1_291214_291574_-	cd17321, MFS_MMR_MDR_like, Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|311aa|down_2|NZ_LT906621.1_291901_292834_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|521aa|down_3|NZ_LT906621.1_293050_294613_+	pfam09586, YfhO, Bacterial membrane protein YfhO	NA|63aa|down_4|NZ_LT906621.1_294707_294896_+	NA	NA|119aa|down_5|NZ_LT906621.1_294885_295242_+	pfam05717, TnpB_IS66, IS66 Orf2 like protein	NA|74aa|down_6|NZ_LT906621.1_295243_295465_-	pfam13936, HTH_38, Helix-turn-helix domain	NA|1479aa|down_7|NZ_LT906621.1_295641_300078_+	pfam02324, Glyco_hydro_70, Glycosyl hydrolase family 70	NA|742aa|down_8|NZ_LT906621.1_301473_303699_+	TIGR04320, hypothetical_protein, SEC10/PgrA surface exclusion domain	NA|499aa|down_9|NZ_LT906621.1_303931_305428_+	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]
GCF_900205745.1_Lf_IMDO_130101	NZ_LT906621	Limosilactobacillus fermentum strain IMDO 130101 chromosome I	2	848471-849827	1,1,2,2	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas9,cas1,cas2,csn2	cas14j,cas3,DEDDh,cas9,cas1,cas2,csn2,WYL,DinG,cas6e,cas5,cas7,cse2gr11,cas8e,csa3	Type II-B,Type II-C,Type II-A	GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC,GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC,GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC,GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	36,36,36,36	0	0	NA	NA	NA:NA:NA:NA	18,19,20,18	20	TypeII-B,TypeII-C,TypeII-A	cas14j,cas3,DEDDh,cas9,cas1,cas2,csn2,WYL,DinG,cas6e,cas5,cas7,cse2gr11,cas8e,csa3	NA,NA|182aa|down_2|NZ_LT906621.1_853629_854175_+,NA|98aa|down_4|NZ_LT906621.1_855824_856118_+,NA|114aa|down_7|NZ_LT906621.1_857944_858286_+	NA|148aa|up_9|NZ_LT906621.1_836088_836532_+	PRK02833, PRK02833, phosphate-starvation-inducible protein PsiE; Provisional	NA|271aa|up_8|NZ_LT906621.1_836546_837359_+	cd01169, HMPP_kinase, 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1	NA|214aa|up_7|NZ_LT906621.1_837420_838062_-	PRK00043, thiE, thiamine phosphate synthase	NA|266aa|up_6|NZ_LT906621.1_838075_838873_-	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed	NA|262aa|up_5|NZ_LT906621.1_838874_839660_-	PRK09355, PRK09355, hydroxyethylthiazole kinase; Validated	NA|656aa|up_4|NZ_LT906621.1_840008_841976_+	TIGR03766, hypothetical_protein_lp_2141, conserved hypothetical integral membrane protein	cas9|1382aa|up_3|NZ_LT906621.1_842232_846378_+	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	cas1|302aa|up_2|NZ_LT906621.1_846585_847491_+	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas2|102aa|up_1|NZ_LT906621.1_847468_847774_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|224aa|up_0|NZ_LT906621.1_847770_848442_+	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	NA|407aa|down_0|NZ_LT906621.1_849857_851078_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|544aa|down_1|NZ_LT906621.1_851374_853006_+	TIGR03663, TIGR03663, TIGR03663 family protein	NA|182aa|down_2|NZ_LT906621.1_853629_854175_+	NA	NA|318aa|down_3|NZ_LT906621.1_854361_855315_-	PRK00066, ldh, L-lactate dehydrogenase; Reviewed	NA|98aa|down_4|NZ_LT906621.1_855824_856118_+	NA	NA|321aa|down_5|NZ_LT906621.1_856173_857136_+	PRK00517, prmA, 50S ribosomal protein L11 methyltransferase	NA|250aa|down_6|NZ_LT906621.1_857135_857885_+	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional	NA|114aa|down_7|NZ_LT906621.1_857944_858286_+	NA	NA|745aa|down_8|NZ_LT906621.1_858301_860536_+	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|146aa|down_9|NZ_LT906621.1_860545_860983_+	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional
GCF_900205745.1_Lf_IMDO_130101	NZ_LT906621	Limosilactobacillus fermentum strain IMDO 130101 chromosome I	3	1294238-1296954	3,2,3,4	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	DEDDh,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,cas14j	cas14j,cas3,DEDDh,cas9,cas1,cas2,csn2,WYL,DinG,cas6e,cas5,cas7,cse2gr11,cas8e,csa3	Type I-E	GGATCACCCCCATATACATGGGGAGCAC,GGATCACCCCCATATACATGGGGAGCAC,GGATCACCCCCATATACATGGGGAGCAC,GGATCACCCCCATATACATGGGGAGCAC	28,28,28,28	0	0	NA	NA	NA:NA:NA:NA	41,44,44,41	44	TypeI-E,TypeV	cas14j,cas3,DEDDh,cas9,cas1,cas2,csn2,WYL,DinG,cas6e,cas5,cas7,cse2gr11,cas8e,csa3	NA,NA	NA|293aa|up_9|NZ_LT906621.1_1281556_1282435_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|96aa|up_8|NZ_LT906621.1_1282458_1282746_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|380aa|up_7|NZ_LT906621.1_1283163_1284303_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|306aa|up_6|NZ_LT906621.1_1284552_1285470_-	PRK07259, PRK07259, dihydroorotate dehydrogenase	NA|1060aa|up_5|NZ_LT906621.1_1285482_1288662_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|361aa|up_4|NZ_LT906621.1_1288661_1289744_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|430aa|up_3|NZ_LT906621.1_1289745_1291035_-	PRK09357, pyrC, dihydroorotase; Validated	NA|322aa|up_2|NZ_LT906621.1_1291034_1292000_-	PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit	NA|265aa|up_1|NZ_LT906621.1_1292334_1293129_-	PRK05463, PRK05463, putative hydro-lyase	NA|323aa|up_0|NZ_LT906621.1_1293237_1294206_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	DEDDh|293aa|down_0|NZ_LT906621.1_1296983_1297862_-	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family	cas1|313aa|down_1|NZ_LT906621.1_1297865_1298804_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|219aa|down_2|NZ_LT906621.1_1298800_1299457_-	pfam08798, CRISPR_assoc, CRISPR associated protein	cas5|236aa|down_3|NZ_LT906621.1_1299469_1300177_-	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|370aa|down_4|NZ_LT906621.1_1300157_1301267_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|195aa|down_5|NZ_LT906621.1_1301275_1301860_-	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas8e|555aa|down_6|NZ_LT906621.1_1301876_1303541_-	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cas3|915aa|down_7|NZ_LT906621.1_1303521_1306266_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|120aa|down_8|NZ_LT906621.1_1306495_1306855_-	PRK05338, rplS, 50S ribosomal protein L19; Provisional	NA|476aa|down_9|NZ_LT906621.1_1306975_1308403_-	TIGR00909, putative_amino_acid_transporter, amino acid transporter
