The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LT996891	Staphylococcus aureus isolate 24117-WT chromosome I	2730986	398570	407043	2730986		Synechococcus_phage(33.33%)	9	NA	NA
WP_000238675.1|398570_399137_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.7	7.2e-30
WP_000030811.1|399139_400168_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	3.4e-62
WP_000483713.1|400160_401645_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
WP_000032733.1|401623_403813_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.8	2.7e-141
WP_000666806.1|403805_404477_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000848350.1|404478_404742_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000174044.1|404741_405446_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	41.6	8.1e-47
WP_001010414.1|405449_406574_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000861572.1|406560_407043_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
>prophage 2
NZ_LT996891	Staphylococcus aureus isolate 24117-WT chromosome I	2730986	427215	481177	2730986	bacteriocin,transposase,protease	Streptococcus_phage(28.57%)	52	NA	NA
WP_001089097.1|427215_428397_+|protease	cysteine protease staphopain B	protease	NA	NA	NA	NA
WP_000284457.1|428434_428764_+	staphostatin B	NA	NA	NA	NA	NA
WP_000184947.1|429001_429823_-	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA	NA
WP_000150223.1|429815_430619_-	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA	NA
WP_000526685.1|430605_432279_-	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA	NA
WP_172460312.1|432265_433627_-	isochorismate synthase MenF	NA	NA	NA	NA	NA
WP_000070966.1|433808_434747_+	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
WP_000620949.1|434798_435350_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000867357.1|435514_435730_+	TM2 domain-containing protein	NA	A0A060AN66	Enterococcus_phage	49.1	1.5e-07
WP_020978112.1|435793_435925_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001081344.1|435970_436930_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000766009.1|437417_437774_+	DoxX family protein	NA	NA	NA	NA	NA
WP_000719184.1|437862_439344_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_000410720.1|439349_439637_-	hypothetical protein	NA	NA	NA	NA	NA
WP_072361064.1|439915_440206_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000571167.1|440293_440935_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.0	1.7e-19
WP_000668627.1|440931_441252_-	YxeA family protein	NA	NA	NA	NA	NA
WP_000870832.1|441254_443219_-|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_001797239.1|443262_443535_-|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_031763719.1|443544_443646_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001033865.1|444561_445164_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000214898.1|445178_445355_-	YkvS family protein	NA	NA	NA	NA	NA
WP_000668818.1|445553_446540_+	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000876826.1|446620_446839_-	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000287265.1|447048_447618_+	competence protein ComK	NA	NA	NA	NA	NA
WP_000414185.1|448104_449616_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000021865.1|449754_451113_-	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000455278.1|451129_453454_-|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.8e-11
WP_000928413.1|453672_454476_-	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_001049951.1|454777_456340_-	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.2	1.7e-36
WP_001795833.1|456339_456600_-	YueH family protein	NA	NA	NA	NA	NA
WP_000340119.1|456580_458065_-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
WP_000258650.1|458497_459673_+	diglucosyl diacylglycerol synthase	NA	NA	NA	NA	NA
WP_001154224.1|459650_460841_+	MFS transporter	NA	NA	NA	NA	NA
WP_000600387.1|460953_461463_-	2'-5' RNA ligase family protein	NA	NA	NA	NA	NA
WP_000889191.1|461656_462415_-	esterase family protein	NA	NA	NA	NA	NA
WP_000570700.1|462559_464128_-	alanine:cation symporter family protein	NA	NA	NA	NA	NA
WP_000933105.1|464468_465554_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000933195.1|465749_466520_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_000395152.1|466797_468642_-	monovalent cation:proton antiporter family protein	NA	NA	NA	NA	NA
WP_115657817.1|468651_470034_-	magnesium transporter	NA	NA	NA	NA	NA
WP_000669923.1|470054_470909_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_001270834.1|470905_471715_-	NAD kinase	NA	NA	NA	NA	NA
WP_001077683.1|471731_472367_-	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
WP_001242102.1|472383_472731_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000224619.1|472916_473510_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_000214069.1|473613_473979_+	truncated hemoglobin	NA	NA	NA	NA	NA
WP_000896697.1|474001_474808_+	DsbA family protein	NA	NA	NA	NA	NA
WP_000082725.1|475267_477076_-	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.5	5.5e-47
WP_000959289.1|477123_478110_-	competence protein CoiA	NA	NA	NA	NA	NA
WP_001217728.1|478230_478950_-	adaptor protein MecA	NA	NA	NA	NA	NA
WP_000277718.1|479530_481177_+|transposase	IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	97.4	7.2e-288
>prophage 3
NZ_LT996891	Staphylococcus aureus isolate 24117-WT chromosome I	2730986	659321	673996	2730986		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_000616842.1|659321_660083_-	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
WP_001245577.1|660079_661036_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000876318.1|661022_661994_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_000499195.1|662032_662188_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000562498.1|662589_663561_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000855505.1|663678_665784_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000692521.1|665746_666145_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_001068497.1|666945_667812_+	DMT family transporter	NA	NA	NA	NA	NA
WP_000930014.1|667831_668332_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_000193751.1|668672_670178_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_031835073.1|670255_670357_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000429006.1|670447_671365_+	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	2.1e-07
WP_000197275.1|672044_672587_-	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000663026.1|672937_673996_-	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	27.3	1.5e-20
>prophage 4
NZ_LT996891	Staphylococcus aureus isolate 24117-WT chromosome I	2730986	685967	693787	2730986		Pandoravirus(16.67%)	10	NA	NA
WP_049307813.1|685967_687119_-	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	1.6e-23
WP_000604515.1|687102_687696_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	43.5	1.2e-38
WP_000446724.1|688046_688715_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000941336.1|688716_689136_+	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_001062972.1|689139_689853_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000637687.1|689951_690536_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001093561.1|690815_691256_+	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_001037807.1|691597_692071_+	DoxX family protein	NA	NA	NA	NA	NA
WP_000149344.1|692045_692732_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000244415.1|692731_693787_+	two-component system sensor histidine kinase SaeS	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
>prophage 5
NZ_LT996891	Staphylococcus aureus isolate 24117-WT chromosome I	2730986	2129462	2135141	2730986		Staphylococcus_phage(100.0%)	6	NA	NA
WP_000791411.1|2129462_2130518_+	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.8e-35
WP_000595392.1|2130539_2131556_+	bi-component leukocidin LukGH subunit G	NA	A0A1X9IGW5	Staphylococcus_phage	30.2	6.7e-26
WP_000727643.1|2132855_2133305_-	chemotaxis-inhibiting protein CHIPS	NA	A7TWR9	Staphylococcus_phage	100.0	1.5e-78
WP_000702262.1|2133987_2134338_+	complement inhibitor SCIN-A	NA	A7TWS0	Staphylococcus_phage	100.0	7.5e-54
WP_001791826.1|2134390_2134651_-	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000669789.1|2134961_2135141_-	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
>prophage 6
NZ_LT996891	Staphylococcus aureus isolate 24117-WT chromosome I	2730986	2229196	2275957	2730986	tRNA,protease	Staphylococcus_phage(86.67%)	45	NA	NA
WP_000379985.1|2229196_2230324_+|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
WP_000181394.1|2230328_2230799_+|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
WP_001251224.1|2230956_2231556_+	glucosamine-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_000031108.1|2231580_2231733_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000901021.1|2232859_2233255_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000116224.1|2233450_2234836_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_000669376.1|2235296_2236118_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000437961.1|2236280_2237393_+	GAF domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
WP_001045133.1|2237414_2238038_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000375864.1|2238393_2238858_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000992516.1|2239036_2240161_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_000290301.1|2240229_2240574_+	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	29.7	7.5e-06
WP_001802255.1|2241066_2241165_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000238227.1|2241455_2242652_+	exonuclease SbcCD subunit D	NA	NA	NA	NA	NA
WP_000584628.1|2242641_2245578_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_001244171.1|2245574_2246516_+	3'-5' exoribonuclease YhaM	NA	NA	NA	NA	NA
WP_000782121.1|2246636_2247599_-	foldase	NA	NA	NA	NA	NA
WP_000477959.1|2247803_2248361_-	DUF3267 domain-containing protein	NA	NA	NA	NA	NA
WP_000648118.1|2249093_2249459_-	YtxH domain-containing protein	NA	NA	NA	NA	NA
WP_000004988.1|2249600_2250023_-	HIT family protein	NA	NA	NA	NA	NA
WP_000216874.1|2250156_2250897_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.8	1.2e-24
WP_000551840.1|2250889_2252113_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000737978.1|2252236_2252740_-	signal transduction protein TRAP	NA	NA	NA	NA	NA
WP_001790154.1|2252902_2253013_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000233526.1|2253002_2254040_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_000162881.1|2254097_2255021_+	ferrochelatase	NA	NA	NA	NA	NA
WP_000167554.1|2255044_2256445_+	protoporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_000132890.1|2256766_2257321_+	serine hydrolase family protein	NA	NA	NA	NA	NA
WP_000206349.1|2259704_2260493_-	DUF1828 domain-containing protein	NA	A0A2H4PQI0	Staphylococcus_phage	95.0	1.0e-138
WP_001086053.1|2260505_2260961_-	hypothetical protein	NA	Q4ZCB9	Staphylococcus_virus	76.8	1.7e-61
WP_000473596.1|2261854_2262790_+	bi-component leukocidin LukED subunit E	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
WP_000782463.1|2262791_2263775_+	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.4	1.8e-185
WP_000543848.1|2264144_2264936_-	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
WP_000550254.1|2264940_2265414_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001092783.1|2266359_2266929_-	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	62.6	2.6e-51
WP_025174851.1|2267892_2268600_+|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	95.7	2.4e-123
WP_001039455.1|2268724_2269447_+|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	99.2	1.2e-130
WP_001038866.1|2269504_2270224_+|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	98.7	3.5e-130
WP_001038723.1|2270344_2271064_+|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	97.9	4.3e-128
WP_103150108.1|2271012_2271120_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038760.1|2271221_2271938_+|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	99.6	3.2e-131
WP_001038693.1|2272088_2272808_+|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	99.2	1.2e-130
WP_031835054.1|2272874_2273009_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000028658.1|2273172_2274729_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	99.0	3.4e-287
WP_000072556.1|2274721_2275957_+	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	37.2	6.4e-47
>prophage 7
NZ_LT996891	Staphylococcus aureus isolate 24117-WT chromosome I	2730986	2285148	2321630	2730986	protease	Staphylococcus_phage(93.94%)	40	NA	NA
WP_000864136.1|2285148_2285706_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	96.8	3.7e-79
WP_000414214.1|2285903_2286476_-	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	96.6	1.1e-25
WP_000627537.1|2286576_2286918_-	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	95.6	3.0e-55
WP_000669027.1|2286958_2287585_-	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	93.8	5.3e-90
WP_000070655.1|2287660_2288656_-	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	98.8	6.2e-77
WP_001795535.1|2288736_2289387_-	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	88.4	2.7e-44
WP_072414246.1|2289689_2290145_+	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	1.5e-78
WP_000348365.1|2290303_2291782_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.6	2.8e-283
WP_000778538.1|2291786_2292788_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.0	9.0e-185
WP_000718107.1|2292784_2293042_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000672015.1|2293107_2293581_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	99.4	5.5e-84
WP_001834463.1|2293585_2294332_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.8	1.4e-142
WP_000109906.1|2294709_2296302_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_000933822.1|2296673_2297867_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000366155.1|2297991_2298900_+	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.0	1.7e-137
WP_000453317.1|2299111_2299945_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.6	3.5e-158
WP_000623471.1|2302042_2302396_-	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
WP_001200542.1|2302392_2302758_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000091445.1|2303013_2303316_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001096494.1|2303575_2304289_+	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_001168904.1|2304728_2305364_-|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001030469.1|2305659_2306103_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
WP_001153745.1|2306089_2306533_-	competence protein ComK	NA	NA	NA	NA	NA
WP_115657842.1|2306645_2307116_-	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	97.4	3.3e-81
WP_000384171.1|2307314_2307539_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001032833.1|2307814_2308669_+	glucosaminidase domain-containing protein	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000163236.1|2308963_2309359_-	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	99.2	3.1e-72
WP_000989121.1|2309376_2310669_-	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
WP_000221179.1|2310668_2310983_-	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	100.0	2.0e-53
WP_001261679.1|2311505_2313008_+	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
WP_000077344.1|2313488_2314532_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.4	6.3e-197
WP_000493886.1|2314538_2315171_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.0	6.4e-112
WP_001175484.1|2315181_2316363_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	1.5e-226
WP_001008551.1|2316375_2316840_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001196360.1|2316961_2317963_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.1	7.7e-184
WP_001790712.1|2318074_2318194_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000266096.1|2318196_2319024_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_000757543.1|2319595_2319997_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000764419.1|2320116_2320680_-	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000526539.1|2320676_2321630_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
>prophage 8
NZ_LT996891	Staphylococcus aureus isolate 24117-WT chromosome I	2730986	2457359	2466402	2730986	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_001005769.1|2457359_2458364_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
WP_001019172.1|2458365_2459391_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001112045.1|2459413_2460553_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001160682.1|2460571_2460832_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_000749789.1|2461106_2463386_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_000594993.1|2463588_2465862_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.8	1.2e-62
WP_000364542.1|2465883_2466402_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
>prophage 9
NZ_LT996891	Staphylococcus aureus isolate 24117-WT chromosome I	2730986	2534256	2542586	2730986	tRNA	Caulobacter_phage(16.67%)	7	NA	NA
WP_001217252.1|2534256_2536074_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.6e-54
WP_001283055.1|2536297_2537404_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_000624583.1|2537534_2538212_+|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_000683933.1|2538214_2539315_+	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
WP_001062183.1|2539428_2540775_+	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	1.8e-55
WP_000924220.1|2540784_2541675_+	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	36.0	3.4e-26
WP_001213908.1|2541800_2542586_+	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
>prophage 10
NZ_LT996891	Staphylococcus aureus isolate 24117-WT chromosome I	2730986	2601407	2687923	2730986	tRNA,tail,holin,plate,capsid,integrase,portal,terminase,protease,head	Staphylococcus_phage(81.01%)	104	2602874:2602891	2649320:2649337
WP_000064078.1|2601407_2602133_+	two-component system response regulator SrrA	NA	W8CYM9	Bacillus_phage	43.0	3.5e-45
WP_000987769.1|2602113_2603865_+	two-component system sensor histidine kinase SrrB	NA	A0A1V0SGX0	Hokovirus	33.6	1.7e-21
2602874:2602891	attL	CTAAAAATATTAGAGACA	NA	NA	NA	NA
WP_001641538.1|2604109_2605018_+	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_001793477.1|2605029_2607057_+	hypothetical protein	NA	B5WZK7	Staphylococcus_phage	96.2	1.1e-112
WP_000264751.1|2607099_2608305_-|integrase	site-specific integrase	integrase	A0A2I6PEN0	Staphylococcus_phage	100.0	7.7e-223
WP_000191464.1|2608430_2609045_+	hypothetical protein	NA	M9QRQ8	Staphylococcus_phage	99.5	2.5e-105
WP_001795334.1|2609041_2609188_-	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	100.0	1.2e-16
WP_000449655.1|2609276_2609672_-	hypothetical protein	NA	A0A2I6PEJ7	Staphylococcus_phage	100.0	3.8e-70
WP_115657847.1|2609700_2610135_-	hypothetical protein	NA	A0A2K9VBS2	Staphylococcus_phage	93.8	3.6e-21
WP_000525004.1|2610152_2610614_-	hypothetical protein	NA	A0A2K9VBR7	Staphylococcus_phage	100.0	1.2e-83
WP_000333630.1|2610626_2610941_-	helix-turn-helix transcriptional regulator	NA	A0A0N9BAW4	Staphylococcus_phage	100.0	9.8e-53
WP_001121027.1|2611092_2611329_+	helix-turn-helix transcriptional regulator	NA	A0A2I6PD81	Staphylococcus_phage	100.0	1.5e-37
WP_001148544.1|2611342_2612119_+	Rha family transcriptional regulator	NA	A0A2I6PD87	Staphylococcus_phage	100.0	1.1e-140
WP_000939498.1|2612147_2612291_+	hypothetical protein	NA	W5R8I6	Staphylococcus_phage	100.0	2.5e-16
WP_000642492.1|2612280_2612490_-	hypothetical protein	NA	W5R9J5	Staphylococcus_phage	100.0	1.2e-30
WP_001025401.1|2612545_2612791_+	DUF2829 domain-containing protein	NA	A0A2I6PF15	Staphylococcus_phage	100.0	5.1e-41
WP_001128433.1|2612759_2613125_-	hypothetical protein	NA	A0A2I6PF07	Staphylococcus_phage	100.0	2.4e-63
WP_001097552.1|2613179_2613395_+	hypothetical protein	NA	A0A2I6PF01	Staphylococcus_phage	100.0	1.9e-31
WP_001124198.1|2613421_2613685_+	helix-turn-helix domain-containing protein	NA	A0A2I6PEL8	Staphylococcus_phage	100.0	2.5e-46
WP_001285948.1|2613697_2613859_+	DUF1270 domain-containing protein	NA	A9CR58	Staphylococcus_phage	98.1	1.1e-20
WP_000174994.1|2613937_2614261_+	hypothetical protein	NA	A0A2I6PF12	Staphylococcus_phage	100.0	5.9e-53
WP_000985976.1|2614275_2614638_+	hypothetical protein	NA	A0A2I6PF03	Staphylococcus_phage	100.0	4.9e-56
WP_000762545.1|2614634_2615801_+	DUF2800 domain-containing protein	NA	A7TWG4	Staphylococcus_phage	99.7	7.0e-221
WP_000645042.1|2615826_2616384_+	DUF2815 family protein	NA	A0A2I6PF05	Staphylococcus_phage	100.0	1.8e-97
WP_001802096.1|2616451_2618404_+	DNA polymerase	NA	A0A2I6PE86	Staphylococcus_phage	100.0	0.0e+00
WP_001164629.1|2618416_2618602_+	DUF3113 family protein	NA	A0A2I6PEM8	Staphylococcus_phage	100.0	7.0e-27
WP_000113974.1|2618601_2619003_+	PVL family protein	NA	A0A2I6PEL5	Staphylococcus_phage	100.0	1.2e-68
WP_000022728.1|2619002_2619260_+	DUF3310 domain-containing protein	NA	A0A2I6PEN5	Staphylococcus_phage	100.0	2.6e-43
WP_000235324.1|2619262_2619463_+	hypothetical protein	NA	A0A2I6PEM3	Staphylococcus_phage	100.0	2.5e-30
WP_000132194.1|2619477_2619720_+	hypothetical protein	NA	A0A2I6PEV3	Staphylococcus_phage	100.0	1.5e-40
WP_031865245.1|2619734_2619989_+	DUF1024 family protein	NA	A0A2I6PE79	Staphylococcus_phage	100.0	5.0e-39
WP_031865246.1|2619975_2620146_+	hypothetical protein	NA	A0A2I6PEB2	Staphylococcus_phage	100.0	1.6e-22
WP_031865247.1|2620138_2620666_+	dUTP pyrophosphatase	NA	A0A2I6PE85	Staphylococcus_phage	100.0	7.8e-95
WP_001209217.1|2620702_2620876_+	hypothetical protein	NA	A0A2I6PEA8	Staphylococcus_phage	100.0	3.6e-25
WP_033856914.1|2620892_2621180_+	DUF1381 domain-containing protein	NA	Q4ZBK2	Staphylococcus_phage	94.7	2.6e-44
WP_000608281.1|2621172_2621409_+	hypothetical protein	NA	A7TWI0	Staphylococcus_phage	98.7	1.4e-35
WP_001568228.1|2621398_2621788_+	hypothetical protein	NA	M9QX07	Staphylococcus_phage	100.0	2.8e-65
WP_031764091.1|2621784_2621937_+	transcriptional regulator	NA	A0A2I6PE89	Staphylococcus_phage	100.0	2.6e-19
WP_031910532.1|2622004_2622205_+	DUF1514 family protein	NA	A0A2I6PE96	Staphylococcus_phage	100.0	2.9e-26
WP_031809042.1|2622256_2624704_+	virulence-associated E family protein	NA	Q4ZCG0	Staphylococcus_virus	99.3	0.0e+00
WP_001801650.1|2624812_2624911_-	hypothetical protein	NA	A0A2I6PDP6	Staphylococcus_phage	100.0	3.7e-11
WP_000665205.1|2625044_2625335_+	VRR-NUC domain-containing protein	NA	U5U7A3	Staphylococcus_phage	100.0	4.9e-51
WP_115657848.1|2625315_2626683_+	DEAD/DEAH box helicase	NA	Q4ZCM9	Staphylococcus_virus	97.4	1.7e-258
WP_000513704.1|2626695_2627133_+	transcriptional regulator	NA	A0A2K9VBV2	Staphylococcus_phage	100.0	6.1e-77
WP_000166257.1|2627293_2627614_+	HNH endonuclease	NA	A0A2K9VBV6	Staphylococcus_phage	86.8	4.6e-50
WP_020444673.1|2627739_2628045_+|terminase	P27 family phage terminase small subunit	terminase	U5U414	Staphylococcus_phage	99.0	8.3e-49
WP_031765982.1|2628034_2629726_+|terminase	terminase large subunit	terminase	A0A2K9VBQ1	Staphylococcus_phage	99.6	0.0e+00
WP_115657849.1|2629730_2630969_+|portal	phage portal protein	portal	A0A2I6PF26	Staphylococcus_phage	98.5	3.2e-232
WP_031927476.1|2630952_2631726_+|protease	Clp protease ClpP	protease	M1TAZ4	Staphylococcus_phage	96.9	4.7e-133
WP_115657850.1|2631737_2632901_+|capsid	phage major capsid protein	capsid	M9QQM0	Staphylococcus_phage	99.5	4.7e-217
WP_000050975.1|2632969_2633248_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PE36	Staphylococcus_phage	100.0	2.1e-46
WP_000395501.1|2633259_2633592_+	hypothetical protein	NA	A0A2I6PDD6	Staphylococcus_phage	100.0	6.2e-58
WP_000110020.1|2633588_2633990_+	hypothetical protein	NA	A0A2I6PDD3	Staphylococcus_phage	100.0	6.2e-68
WP_001023802.1|2633990_2634386_+	DUF3168 domain-containing protein	NA	A0A2I6PDD8	Staphylococcus_phage	100.0	2.6e-66
WP_000807541.1|2634420_2635062_+|tail	tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	99.1	5.0e-120
WP_000169127.1|2635153_2635609_+	Ig domain-containing protein	NA	A0A2I6PER6	Staphylococcus_phage	100.0	5.7e-78
WP_000589167.1|2635666_2636017_+	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	100.0	1.1e-55
WP_000438833.1|2636058_2636217_+	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
WP_001003424.1|2636230_2642431_+|tail	phage tail tape measure protein	tail	A0A1X9IGU9	Staphylococcus_phage	100.0	0.0e+00
WP_001190533.1|2642430_2643255_+|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
WP_000384474.1|2643263_2644847_+|tail	phage tail protein	tail	A0A2I6PEQ5	Staphylococcus_phage	100.0	9.3e-309
WP_000179858.1|2644846_2645137_+	hypothetical protein	NA	U5U457	Staphylococcus_phage	100.0	2.1e-49
WP_000429558.1|2645152_2647063_+	minor structural protein	NA	A0A2I6PEQ9	Staphylococcus_phage	100.0	0.0e+00
WP_000067127.1|2647062_2648529_+|plate	phage baseplate upper protein	plate	A0A2I6PES7	Staphylococcus_phage	100.0	1.5e-273
WP_001166599.1|2648528_2648918_+	DUF2977 domain-containing protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
WP_000916020.1|2648910_2649075_+	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
WP_000466784.1|2649120_2649420_+	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
2649320:2649337	attR	CTAAAAATATTAGAGACA	NA	NA	NA	NA
WP_000339146.1|2649555_2649858_+|holin	phage holin	holin	A0A2I6PET6	Staphylococcus_phage	100.0	7.0e-48
WP_000909213.1|2649868_2651323_+	N-acetylmuramoyl-L-alanine amidase	NA	U5U7D2	Staphylococcus_phage	100.0	2.6e-289
WP_000126130.1|2652045_2652261_+	hypothetical protein	NA	A0ZS61	Staphylococcus_virus	100.0	2.0e-25
WP_000476867.1|2652351_2653257_+	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000476338.1|2653314_2654232_+	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000476341.1|2654288_2655221_+	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_001186912.1|2655622_2656168_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_001151997.1|2656273_2656522_-	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	8.3e-15
WP_001163805.1|2656629_2657583_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_000902122.1|2657572_2658952_+	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	33.3	3.8e-56
WP_000069314.1|2659104_2660559_+	elastin-binding protein EbpS	NA	NA	NA	NA	NA
WP_031824588.1|2660683_2660800_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001174260.1|2660960_2661947_+	YpdA family putative bacillithiol disulfide reductase	NA	NA	NA	NA	NA
WP_000681769.1|2662061_2663030_-	asparaginase	NA	NA	NA	NA	NA
WP_000644391.1|2663106_2663766_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_000133950.1|2664463_2665639_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_000165533.1|2665860_2667171_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_000161746.1|2667187_2668186_+	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_001043863.1|2668356_2668629_+	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
WP_000450555.1|2669059_2669632_+	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA	NA
WP_000774684.1|2669634_2670360_+	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
WP_001096479.1|2670361_2671321_+	polyprenyl synthetase family protein	NA	A0A1V0SE37	Indivirus	24.4	1.3e-10
WP_000442480.1|2671412_2671862_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	2.4e-28
WP_000789522.1|2672070_2672271_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001269929.1|2672656_2673823_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.1	7.6e-34
WP_000776326.1|2673848_2674913_+	3-dehydroquinate synthase	NA	NA	NA	NA	NA
WP_000245900.1|2674922_2676221_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_000389524.1|2676227_2677472_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000005213.1|2677485_2678061_+	YpiB family protein	NA	G3MAV7	Bacillus_virus	27.2	2.7e-08
WP_000152734.1|2678050_2678638_+	DUF1405 domain-containing protein	NA	NA	NA	NA	NA
WP_001827022.1|2678709_2679390_+	zinc metallopeptidase	NA	NA	NA	NA	NA
WP_000839931.1|2679726_2680044_+	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_115657851.1|2680284_2681427_+	N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA	NA	NA	NA	NA	NA
WP_000361532.1|2681431_2682634_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	42.0	1.2e-34
WP_115657852.1|2682620_2683592_+	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_000525074.1|2683615_2686309_+	ATP-dependent helicase	NA	A0A1X9I5C8	Streptococcus_phage	34.4	8.2e-47
WP_000858791.1|2686630_2687923_+|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.0	1.9e-54
