The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LT992434	Staphylococcus aureus isolate 1549-WT chromosome I	2730154	31716	40189	2730154		Synechococcus_phage(33.33%)	9	NA	NA
WP_001622461.1|31716_32199_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	8.0e-22
WP_001010404.1|32185_33310_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174048.1|33313_34018_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	41.2	4.0e-46
WP_000848350.1|34017_34281_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_115657031.1|34282_34954_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032752.1|34946_37136_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.8	3.5e-141
WP_000483713.1|37114_38599_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
WP_000030827.1|38591_39620_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	1.2e-62
WP_000238657.1|39622_40189_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	39.6	8.0e-29
>prophage 2
NZ_LT992434	Staphylococcus aureus isolate 1549-WT chromosome I	2730154	295550	308537	2730154	portal,integrase,terminase	Staphylococcus_phage(60.0%)	23	289373:289390	312843:312860
289373:289390	attL	ATTCAATCATTAATATAT	NA	NA	NA	NA
WP_000146714.1|295550_296258_-|integrase	phage integrase SAM-like domain-containing protein	integrase	V9QKF1	Oenococcus_phage	26.2	4.7e-10
WP_001183755.1|296310_297006_-	Ltp family lipoprotein	NA	A0A2H4J5B8	uncultured_Caudovirales_phage	51.5	2.1e-07
WP_000554409.1|297017_297401_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001083979.1|297547_297913_-	helix-turn-helix domain-containing protein	NA	R9QTP6	Staphylococcus_phage	47.9	1.8e-21
WP_000842951.1|298074_298287_+	DUF739 family protein	NA	A0A2I6PDH8	Staphylococcus_phage	83.3	6.8e-26
WP_000789021.1|298334_298616_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000072840.1|298786_298948_+	DUF1270 family protein	NA	R4IH12	Staphylococcus_phage	69.8	1.1e-12
WP_000786995.1|299034_299352_+	DUF2482 family protein	NA	W5RAK4	Staphylococcus_phage	80.6	1.6e-39
WP_000786635.1|299341_299608_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	53.6	3.9e-18
WP_001004328.1|299612_300149_+	host-nuclease inhibitor Gam family protein	NA	A0A0H3U480	Staphylococcus_phage	81.4	1.1e-75
WP_000818736.1|300149_300929_+	ATP-binding protein	NA	A0A1W6JPW0	Staphylococcus_phage	88.8	9.3e-129
WP_000702008.1|300955_301504_+	hypothetical protein	NA	A7TWM8	Staphylococcus_phage	92.9	1.7e-92
WP_000929467.1|301517_302456_+	DnaD domain protein	NA	A0A1P8L6F0	Staphylococcus_phage	48.1	4.8e-47
WP_000945229.1|302456_302747_+	hypothetical protein	NA	A0A223LIA9	Staphylococcus_phage	58.1	5.5e-18
WP_000714365.1|302761_302920_+	hypothetical protein	NA	A0A0E3T9L7	Staphylococcus_phage	90.4	7.9e-19
WP_000860977.1|302925_303237_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000185174.1|303229_303760_+	nucleotide pyrophosphohydrolase	NA	A0A1P8VVP1	Streptococcus_phage	39.1	8.0e-23
WP_025174108.1|303901_304009_+	DUF1381 domain-containing protein	NA	C8CH06	Staphylococcus_phage	84.4	1.4e-06
WP_000835356.1|304005_304470_+	hypothetical protein	NA	C9E2P0	Enterococcus_phage	43.7	2.5e-20
WP_000653928.1|304746_305235_+	hypothetical protein	NA	R9TMH4	Paenibacillus_phage	27.7	1.9e-07
WP_000090969.1|305386_305815_+	helix-turn-helix domain-containing protein	NA	A1EAE0	Streptococcus_phage	45.1	1.1e-25
WP_000207540.1|305801_307076_+|terminase	PBSX family phage terminase large subunit	terminase	Q4ZE37	Staphylococcus_virus	76.4	4.2e-195
WP_000158569.1|307088_308537_+|portal	phage portal protein	portal	Q4ZE36	Staphylococcus_virus	69.6	1.9e-196
312843:312860	attR	ATATATTAATGATTGAAT	NA	NA	NA	NA
>prophage 3
NZ_LT992434	Staphylococcus aureus isolate 1549-WT chromosome I	2730154	594715	603027	2730154	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|594715_595501_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924214.1|595626_596517_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001062177.1|596526_597873_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
WP_000683915.1|597986_599087_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	3.0e-08
WP_000624564.1|599089_599767_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|599897_601004_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217237.1|601227_603027_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	1.3e-53
>prophage 4
NZ_LT992434	Staphylococcus aureus isolate 1549-WT chromosome I	2730154	672341	681385	2730154	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364543.1|672341_672860_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.8	2.1e-28
WP_000594987.1|672881_675155_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.5	7.3e-65
WP_115657062.1|675358_677638_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|677912_678173_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|678191_679331_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_031928192.1|679353_680379_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005764.1|680380_681385_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 5
NZ_LT992434	Staphylococcus aureus isolate 1549-WT chromosome I	2730154	804769	851098	2730154	transposase,tRNA,protease	Staphylococcus_phage(91.43%)	43	NA	NA
WP_115657064.1|804769_811327_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	87.5	6.6e-292
WP_000836464.1|811651_811963_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	97.1	6.9e-51
WP_001622206.1|811984_814402_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	98.7	0.0e+00
WP_001025064.1|814690_815872_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	9.6e-218
WP_000526542.1|815981_816935_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764418.1|816931_817495_+	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	98.4	4.1e-102
WP_000757543.1|817611_818013_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|818583_819411_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_014937042.1|819413_819533_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196354.1|819644_820646_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_001008551.1|820767_821232_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001159030.1|821244_822426_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	99.5	5.6e-226
WP_000493880.1|822436_823069_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	97.6	2.1e-110
WP_000077348.1|823075_824119_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	1.2e-195
WP_001261660.1|824600_826103_-	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
WP_000221174.1|826745_827060_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	96.2	1.8e-51
WP_076686008.1|827059_828352_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	94.7	4.0e-217
WP_001032834.1|828438_829293_-	glucosaminidase domain-containing protein	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|829567_829792_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671060.1|829990_830461_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	85.2	3.8e-69
WP_001152694.1|830573_831017_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030473.1|831003_831447_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	77.9	1.1e-49
WP_001168913.1|831743_832379_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000492904.1|832545_833166_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001096494.1|833901_834615_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091443.1|834873_835176_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200545.1|835431_835797_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	99.2	6.2e-59
WP_000623468.1|835793_836147_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	91.5	2.7e-19
WP_000453324.1|836396_837230_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	3.5e-158
WP_000366165.1|837441_838350_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.7	9.8e-138
WP_000933821.1|838474_839668_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.5	4.3e-218
WP_000109912.1|840039_841632_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.8	0.0e+00
WP_001827685.1|842011_842758_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	97.6	6.6e-140
WP_000672013.1|842762_843236_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	7.2e-84
WP_000718111.1|843301_843559_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	97.6	1.0e-44
WP_000778530.1|843555_844557_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.6	3.1e-185
WP_000348383.1|844561_846040_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	95.1	1.0e-277
WP_072468941.1|846198_846654_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	2.3e-79
WP_001796416.1|846956_847607_+	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	70.4	1.3e-30
WP_000070666.1|847687_848683_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	97.2	1.9e-73
WP_000669031.1|848758_849385_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	84.1	3.9e-85
WP_000627532.1|849425_849767_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	91.2	4.8e-53
WP_098686295.1|849968_851098_-|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	54.3	5.2e-80
>prophage 6
NZ_LT992434	Staphylococcus aureus isolate 1549-WT chromosome I	2730154	943621	1037616	2730154	portal,capsid,tRNA,terminase,head,integrase,protease,tail,holin	Staphylococcus_phage(87.18%)	114	1004468:1004485	1028814:1028831
WP_000027926.1|943621_945079_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
WP_000170162.1|945080_945383_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_000957019.1|945749_947288_+	sodium/proline symporter PutP	NA	NA	NA	NA	NA
WP_000831695.1|947376_948576_-	CamS family sex pheromone protein	NA	NA	NA	NA	NA
WP_115657067.1|948588_950592_-	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	36.1	3.4e-114
WP_000992924.1|950595_952788_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
WP_000272062.1|952784_953477_-	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
WP_001165363.1|953648_953951_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076686095.1|954059_955355_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
WP_000827739.1|956201_957368_+|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
WP_000434537.1|957398_957725_+	staphostatin A	NA	NA	NA	NA	NA
WP_000669865.1|958015_958189_-	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000011542.1|958169_958772_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000164017.1|959042_959864_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	4.4e-68
WP_000284427.1|959856_961326_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	44.3	3.2e-106
WP_000898869.1|961509_962586_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_001177820.1|962605_963400_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_031785526.1|963471_963579_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000323161.1|963589_965152_-	SLC13 family permease	NA	NA	NA	NA	NA
WP_000275721.1|965356_966454_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	2.5e-47
WP_000149686.1|966825_967386_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_001140871.1|967438_968368_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_001790680.1|968560_968734_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001021226.1|968785_970165_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000181320.1|970284_971313_-	lactonase family protein	NA	NA	NA	NA	NA
WP_000205103.1|971582_971984_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	1.3e-22
WP_000267034.1|972040_972214_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001188080.1|972664_973705_+	choloylglycine hydrolase	NA	NA	NA	NA	NA
WP_000713063.1|973761_974604_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001033966.1|974600_975158_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000966286.1|975217_975742_-	membrane protein	NA	NA	NA	NA	NA
WP_000182842.1|975862_976426_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001221648.1|976491_977232_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000763048.1|977231_978104_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
WP_000645721.1|978100_978781_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000991300.1|978781_979678_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
WP_000691584.1|979674_980055_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000681966.1|980312_980489_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000990056.1|980730_980829_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001068518.1|981028_982315_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_000669710.1|982585_984655_-	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_000669789.1|985612_985792_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_001791826.1|986102_986363_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000702263.1|986415_986766_-	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_000727649.1|987450_987900_+	chemotaxis-inhibiting protein CHIPS	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
WP_000919350.1|988979_989471_-	staphylokinase	NA	A0A1X9H028	Staphylococcus_phage	100.0	9.5e-87
WP_000861038.1|989661_990417_-	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000611512.1|990428_990683_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_001791821.1|990734_990842_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011447039.1|990894_991071_-|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_000539688.1|991220_991517_-	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
WP_001040261.1|991574_991862_-	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
WP_001153681.1|991908_992061_-	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_000582165.1|992050_995836_-	hypothetical protein	NA	A0A1X9H0H3	Staphylococcus_phage	98.5	0.0e+00
WP_000567408.1|995851_997336_-|tail	phage tail family protein	tail	A0A2I6PDJ0	Staphylococcus_phage	100.0	1.2e-297
WP_001796452.1|997332_1001862_-|tail	phage tail tape measure protein	tail	A0A2I6PDK2	Staphylococcus_phage	99.8	0.0e+00
WP_001789580.1|1001918_1002080_-	hypothetical protein	NA	A0A0H3U330	Staphylococcus_phage	100.0	1.6e-22
WP_001096355.1|1002106_1002457_-	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
WP_071621395.1|1002506_1002731_-	Ig-like domain-containing protein	NA	A0A075LYE8	Staphylococcus_phage	100.0	3.0e-32
WP_000268733.1|1002772_1003417_-|tail	phage tail protein	tail	A0A1X9H0J2	Staphylococcus_phage	100.0	1.5e-119
WP_000565498.1|1003417_1003825_-	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
WP_000114227.1|1003821_1004226_-	HK97 gp10 family phage protein	NA	G4KNQ5	Staphylococcus_phage	99.3	2.1e-68
WP_000755150.1|1004222_1004585_-|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
1004468:1004485	attL	ATAATTTTTCTTCTTTTT	NA	NA	NA	NA
WP_000150936.1|1004568_1004853_-|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000238236.1|1004842_1005127_-	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
WP_000154559.1|1005146_1006292_-|capsid	phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	100.0	9.6e-215
WP_000642728.1|1006315_1007053_-|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
WP_000025274.1|1007036_1008224_-|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
WP_000625088.1|1008239_1009901_-|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
WP_000402904.1|1009897_1010242_-	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_000988336.1|1010372_1010672_-	HNH endonuclease	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
WP_000590122.1|1010903_1011320_-	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_001622114.1|1011347_1011548_-	DUF1514 family protein	NA	A0A2I6PDV9	Staphylococcus_phage	98.5	4.0e-28
WP_000595265.1|1011547_1011697_-	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_000592207.1|1011693_1012080_-	hypothetical protein	NA	W5R986	Staphylococcus_phage	100.0	3.0e-64
WP_076686084.1|1012076_1012283_-	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	98.5	4.9e-29
WP_001282074.1|1012279_1012525_-	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	100.0	5.0e-36
WP_001066447.1|1012561_1013098_-	dUTP diphosphatase	NA	A0A0H3U2Z8	Staphylococcus_phage	100.0	7.2e-96
WP_000714403.1|1013090_1013261_-	hypothetical protein	NA	A0A0H3U4U6	Staphylococcus_phage	100.0	8.2e-22
WP_001065097.1|1013247_1013502_-	DUF1024 family protein	NA	A0A0H3U469	Staphylococcus_phage	100.0	5.0e-39
WP_000131370.1|1013516_1013759_-	hypothetical protein	NA	Q4ZDP7	Staphylococcus_virus	95.0	2.1e-39
WP_000101288.1|1013762_1014131_-	hypothetical protein	NA	A0A0H3U2T3	Staphylococcus_phage	100.0	2.0e-49
WP_000401960.1|1014143_1014548_-	RusA family crossover junction endodeoxyribonuclease	NA	A0EWX6	Staphylococcus_phage	100.0	1.9e-72
WP_000338530.1|1014556_1014775_-	hypothetical protein	NA	A0A2I6PDG4	Staphylococcus_phage	100.0	1.0e-37
WP_115657068.1|1014781_1015675_-	DnaD domain-containing protein	NA	A0A2I6PDG7	Staphylococcus_phage	99.0	2.1e-140
WP_115657069.1|1015704_1016175_-	single-stranded DNA-binding protein	NA	A0EWX3	Staphylococcus_phage	98.1	4.8e-80
WP_073394849.1|1016175_1016793_-	MBL fold metallo-hydrolase	NA	A0A2I6PDI9	Staphylococcus_phage	100.0	9.1e-87
WP_000138475.1|1016873_1017794_-	recombinase RecT	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
WP_000700555.1|1017795_1019739_-	AAA family ATPase	NA	S4V9K6	Staphylococcus_phage	100.0	0.0e+00
WP_001205732.1|1019747_1020011_-	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000291510.1|1020019_1020280_-	DUF1108 family protein	NA	A0A1P8L6F5	Staphylococcus_phage	100.0	5.2e-44
WP_000165371.1|1020284_1020587_-	DUF2482 family protein	NA	A0A1P8L6F8	Staphylococcus_phage	100.0	7.0e-48
WP_000048129.1|1020681_1020843_-	DUF1270 family protein	NA	A0A1P8L6G0	Staphylococcus_phage	100.0	1.9e-20
WP_001120201.1|1020839_1021163_-	DUF771 domain-containing protein	NA	A0A075LYF5	Staphylococcus_phage	100.0	3.0e-57
WP_000762519.1|1021217_1021598_+	DUF2513 domain-containing protein	NA	Q9T1Z5	Staphylococcus_phage	99.2	3.4e-68
WP_001148862.1|1021584_1021782_-	hypothetical protein	NA	O80075	Staphylococcus_phage	87.7	3.5e-24
WP_001148605.1|1021797_1022550_-	phage antirepressor KilAC domain-containing protein	NA	M9NTH5	Staphylococcus_phage	100.0	1.1e-139
WP_000128907.1|1022600_1022930_+	hypothetical protein	NA	M9NS98	Staphylococcus_phage	100.0	2.7e-53
WP_001025404.1|1022918_1023134_-	DUF2829 domain-containing protein	NA	A0A0H3U4C7	Staphylococcus_phage	100.0	4.8e-35
WP_000854074.1|1023130_1023412_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PF09	Staphylococcus_phage	96.5	4.6e-38
WP_001801500.1|1023408_1023582_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001031454.1|1023544_1024258_+	helix-turn-helix transcriptional regulator	NA	M9NUL0	Staphylococcus_phage	100.0	1.2e-130
WP_000759682.1|1024273_1025206_+	ATP-dependent helicase	NA	A0A2I6PEZ7	Staphylococcus_phage	100.0	5.7e-173
WP_000591749.1|1025211_1025553_+	hypothetical protein	NA	A0A2I6PF04	Staphylococcus_phage	100.0	4.6e-56
WP_000705248.1|1025756_1025939_+	hypothetical protein	NA	M9NSW6	Staphylococcus_phage	100.0	4.1e-27
WP_000825947.1|1026038_1026503_+	hypothetical protein	NA	A0EWV3	Staphylococcus_phage	100.0	1.1e-28
WP_000857191.1|1026561_1027599_+|integrase	site-specific integrase	integrase	A0EWV2	Staphylococcus_phage	100.0	9.1e-180
WP_000595616.1|1028736_1029756_-	leukocidin/hemolysin toxin family protein	NA	A0A2I6PEU3	Staphylococcus_phage	39.8	2.6e-54
1028814:1028831	attR	ATAATTTTTCTTCTTTTT	NA	NA	NA	NA
WP_000791399.1|1029777_1030833_-	succinyl-diaminopimelate desuccinylase	NA	A0A2I6PER8	Staphylococcus_phage	34.6	6.0e-38
WP_000206615.1|1031263_1032487_+	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_115657070.1|1032882_1034190_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000240642.1|1034721_1036338_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
WP_000917289.1|1036413_1036698_-	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
WP_000197627.1|1036872_1037616_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
>prophage 7
NZ_LT992434	Staphylococcus aureus isolate 1549-WT chromosome I	2730154	2491653	2502290	2730154		uncultured_Caudovirales_phage(62.5%)	9	NA	NA
WP_000193753.1|2491653_2493159_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.6e-58
WP_000930014.1|2493499_2494000_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068497.1|2494019_2494886_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|2495687_2496086_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_064131610.1|2496048_2498154_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.6	0.0e+00
WP_000562500.1|2498271_2499243_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	3.2e-171
WP_000876313.1|2499617_2500589_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	79.9	1.0e-140
WP_001245581.1|2500575_2501532_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616861.1|2501528_2502290_+	ATP-binding cassette domain-containing protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	30.6	2.7e-16
>prophage 8
NZ_LT992434	Staphylococcus aureus isolate 1549-WT chromosome I	2730154	2554494	2574995	2730154	transposase,integrase,coat	Staphylococcus_phage(66.67%)	26	2557156:2557171	2573183:2573198
WP_115657119.1|2554494_2556867_+	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	38.7	9.6e-92
WP_001085185.1|2556888_2557353_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	100.0	1.5e-81
2557156:2557171	attL	CGTGAAATCATTAAAT	NA	NA	NA	NA
WP_000149511.1|2557915_2559022_-|integrase	site-specific integrase	integrase	H0UST3	Bacillus_phage	44.4	1.1e-77
WP_000358990.1|2559011_2559815_-	helix-turn-helix transcriptional regulator	NA	A0A2H4JC02	uncultured_Caudovirales_phage	55.9	5.3e-10
WP_001045296.1|2559950_2560154_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_000163544.1|2560189_2560408_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000784885.1|2560419_2560566_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001058494.1|2560558_2560768_+	hypothetical protein	NA	Q4ZE76	Staphylococcus_phage	94.2	8.5e-29
WP_001103939.1|2560770_2561088_+	DUF1474 family protein	NA	A0A1W6JQH0	Staphylococcus_phage	57.0	3.2e-19
WP_001002717.1|2561151_2562021_+	primase C-terminal domain-containing protein	NA	A0A1W6JQL5	Staphylococcus_phage	95.8	8.7e-160
WP_111125118.1|2562037_2562562_+	hypothetical protein	NA	A0A1W6JQD6	Staphylococcus_phage	98.1	8.9e-83
WP_115657120.1|2562573_2563702_+|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	54.3	5.2e-80
WP_001039170.1|2565021_2565384_+	hypothetical protein	NA	A0A1W6JQD5	Staphylococcus_phage	98.3	3.4e-65
WP_000998185.1|2565385_2565670_+	hypothetical protein	NA	A0A1W6JQE4	Staphylococcus_phage	98.9	7.7e-49
WP_001019808.1|2565666_2566308_+	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	92.5	1.9e-111
WP_001288441.1|2567016_2567361_+	hypothetical protein	NA	A0A1W6JQF3	Staphylococcus_phage	100.0	1.4e-57
WP_000856046.1|2567395_2567974_+	hypothetical protein	NA	A0A1W6JQG0	Staphylococcus_phage	95.8	7.8e-80
WP_001160678.1|2567973_2568150_+	hypothetical protein	NA	A0A1W6JQJ5	Staphylococcus_phage	100.0	7.7e-23
WP_000777464.1|2568202_2568730_+|coat	spore coat protein	coat	A0A1W6JQH7	Staphylococcus_phage	98.9	1.1e-88
WP_045181470.1|2568861_2569074_+	hypothetical protein	NA	Q4ZE86	Staphylococcus_phage	98.6	1.1e-31
WP_000360021.1|2569744_2570785_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001805416.1|2570897_2571086_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001001286.1|2571078_2571747_+	restriction endonuclease	NA	A0A0A7S0U2	Clostridium_phage	33.7	4.5e-15
WP_001035612.1|2571967_2572522_-	DUF4888 domain-containing protein	NA	A0A1W6JQE5	Staphylococcus_phage	67.2	4.2e-59
WP_001043552.1|2573305_2574106_+	staphylococcal enterotoxin type C2	NA	A0A097PAT7	Streptococcus_pyogenes_phage	43.4	3.1e-50
2573183:2573198	attR	CGTGAAATCATTAAAT	NA	NA	NA	NA
WP_000746602.1|2574272_2574995_-	staphylococcal enterotoxin type L	NA	A0A097PAT7	Streptococcus_pyogenes_phage	29.3	1.6e-18
