assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900323925.1_1549-WT	NZ_LT992434	Staphylococcus aureus isolate 1549-WT chromosome I	1	1239979-1240117	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTTTTAATATTTTTCTTTTGAGTTACTCGAAAATTTTTCTCTTTACTCGAA	51	1	1	1240030-1240066	NZ_LT992434.1_1239941-1239977	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|93aa|up_7|NZ_LT992434.1_1232017_1232296_+,NA|67aa|up_1|NZ_LT992434.1_1238652_1238853_+,NA|61aa|up_0|NZ_LT992434.1_1238834_1239017_-,NA	NA|807aa|up_9|NZ_LT992434.1_1227669_1230090_+	cd01083, GAG_Lyase, Glycosaminoglycan (GAG) polysaccharide lyase family	NA|285aa|up_8|NZ_LT992434.1_1230288_1231143_-	COG0739, NlpD, Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane]	NA|93aa|up_7|NZ_LT992434.1_1232017_1232296_+	NA	NA|506aa|up_6|NZ_LT992434.1_1232305_1233823_+	cd04949, GT4_GtfA-like, accessory Sec system glycosyltransferase GtfA and similar proteins	NA|272aa|up_5|NZ_LT992434.1_1234047_1234863_-	cd02605, HAD_SPP, sucrose-phosphatase, similar to Synechocystis sp PCC 6803 SPP	NA|142aa|up_4|NZ_LT992434.1_1235157_1235583_+	pfam03642, MAP, MAP domain	NA|235aa|up_3|NZ_LT992434.1_1235958_1236663_-	COG3527, AlsD, Alpha-acetolactate decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|555aa|up_2|NZ_LT992434.1_1236699_1238364_-	PRK08617, PRK08617, acetolactate synthase AlsS	NA|67aa|up_1|NZ_LT992434.1_1238652_1238853_+	NA	NA|61aa|up_0|NZ_LT992434.1_1238834_1239017_-	NA	NA|133aa|down_0|NZ_LT992434.1_1241893_1242292_-	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|146aa|down_1|NZ_LT992434.1_1242305_1242743_-	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|268aa|down_2|NZ_LT992434.1_1242982_1243786_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|269aa|down_3|NZ_LT992434.1_1243790_1244597_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|287aa|down_4|NZ_LT992434.1_1244586_1245447_-	PRK13646, cbiO, energy-coupling factor transporter ATPase	NA|270aa|down_5|NZ_LT992434.1_1245443_1246253_-	PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional	NA|123aa|down_6|NZ_LT992434.1_1246790_1247159_-	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|315aa|down_7|NZ_LT992434.1_1247175_1248120_-	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional	NA|130aa|down_8|NZ_LT992434.1_1248194_1248584_-	PRK05309, PRK05309, 30S ribosomal protein S11; Validated	NA|122aa|down_9|NZ_LT992434.1_1248607_1248973_-	PRK05179, rpsM, 30S ribosomal protein S13; Validated
GCF_900323925.1_1549-WT	NZ_LT992434	Staphylococcus aureus isolate 1549-WT chromosome I	2	1430965-1431058	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTCTTCAAATTTATTTGTTAGAAAGG	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|35aa|up_2|NZ_LT992434.1_1428686_1428791_+,NA|35aa|down_0|NZ_LT992434.1_1431252_1431357_-	NA|200aa|up_9|NZ_LT992434.1_1422163_1422763_-	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]	NA|121aa|up_8|NZ_LT992434.1_1422781_1423144_-	pfam14729, DUF4467, Domain of unknown function with cystatin-like fold (DUF4467)	NA|417aa|up_7|NZ_LT992434.1_1423398_1424649_+	pfam02388, FemAB, FemAB family	NA|244aa|up_6|NZ_LT992434.1_1424745_1425477_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|240aa|up_5|NZ_LT992434.1_1425473_1426193_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|260aa|up_4|NZ_LT992434.1_1426173_1426953_-	cd13711, PBP2_Ngo0372_TcyA, Substrate binding domain of ABC transporters involved in cystine import; the type 2 periplasmic binding protein fold	NA|480aa|up_3|NZ_LT992434.1_1427073_1428513_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|35aa|up_2|NZ_LT992434.1_1428686_1428791_+	NA	NA|229aa|up_1|NZ_LT992434.1_1428944_1429631_-	PRK14119, gpmA, phosphoglyceromutase; Provisional	NA|289aa|up_0|NZ_LT992434.1_1429957_1430824_-	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|35aa|down_0|NZ_LT992434.1_1431252_1431357_-	NA	NA|438aa|down_1|NZ_LT992434.1_1431451_1432765_+	pfam11621, Sbi-IV, C3 binding domain 4 of IgG-bind protein SBI	NA|310aa|down_2|NZ_LT992434.1_1433300_1434230_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|316aa|down_3|NZ_LT992434.1_1434797_1435745_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|326aa|down_4|NZ_LT992434.1_1435746_1436724_+	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|156aa|down_5|NZ_LT992434.1_1436782_1437250_-	pfam06177, QueT, QueT transporter	NA|231aa|down_6|NZ_LT992434.1_1437260_1437953_-	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|372aa|down_7|NZ_LT992434.1_1437963_1439079_-	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|336aa|down_8|NZ_LT992434.1_1439056_1440064_-	PRK06256, PRK06256, biotin synthase; Validated	NA|453aa|down_9|NZ_LT992434.1_1440065_1441424_-	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase
GCF_900323925.1_1549-WT	NZ_LT992434	Staphylococcus aureus isolate 1549-WT chromosome I	3	2437160-2437261	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CATAAGAGCCCCTAATTAATAAATTAAAAGGGG	33	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|39aa|up_2|NZ_LT992434.1_2435098_2435215_+,NA|230aa|down_2|NZ_LT992434.1_2439082_2439772_-,NA|100aa|down_5|NZ_LT992434.1_2440936_2441236_+	NA|336aa|up_9|NZ_LT992434.1_2426880_2427888_+	pfam01384, PHO4, Phosphate transporter family	NA|266aa|up_8|NZ_LT992434.1_2428473_2429271_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|215aa|up_7|NZ_LT992434.1_2429631_2430276_+	COG0670, COG0670, Integral membrane protein, interacts with FtsH [General function prediction only]	NA|717aa|up_6|NZ_LT992434.1_2430972_2433123_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|120aa|up_5|NZ_LT992434.1_2433268_2433628_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|239aa|up_4|NZ_LT992434.1_2433817_2434534_+	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator	NA|158aa|up_3|NZ_LT992434.1_2434533_2435007_+	COG3542, COG3542, Uncharacterized conserved protein [Function unknown]	NA|39aa|up_2|NZ_LT992434.1_2435098_2435215_+	NA	NA|215aa|up_1|NZ_LT992434.1_2435359_2436004_+	COG2306, COG2306, Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only]	NA|289aa|up_0|NZ_LT992434.1_2436119_2436986_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|407aa|down_0|NZ_LT992434.1_2437278_2438499_+	cd17471, MFS_Set, Sugar efflux transporter (Set) family of the Major Facilitator Superfamily of transporters	NA|163aa|down_1|NZ_LT992434.1_2438495_2438984_+	COG2839, COG2839, Uncharacterized protein conserved in bacteria [Function unknown]	NA|230aa|down_2|NZ_LT992434.1_2439082_2439772_-	NA	NA|148aa|down_3|NZ_LT992434.1_2439899_2440343_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|130aa|down_4|NZ_LT992434.1_2440409_2440799_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|100aa|down_5|NZ_LT992434.1_2440936_2441236_+	NA	NA|181aa|down_6|NZ_LT992434.1_2441315_2441858_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|189aa|down_7|NZ_LT992434.1_2441952_2442519_-	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only]	NA|153aa|down_8|NZ_LT992434.1_2442520_2442979_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|228aa|down_9|NZ_LT992434.1_2442981_2443665_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed
