assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900324205.1_1_1439	NZ_LT992456	Staphylococcus aureus isolate 1_1439 chromosome I	1	435142-435222	1	CRISPRCasFinder	no		DEDDh,cas3,csa3,WYL,TnsE_C,DinG	Orphan	GGGAGTGGGAGAGAAATGATAAAGA	25	1	1	435167-435197	NZ_LT992456.1_490149-490119	NA	1	1	Orphan	DEDDh,cas3,csa3,WYL,TnsE_C,DinG	NA|105aa|up_7|NZ_LT992456.1_427220_427535_+,NA	NA|356aa|up_9|NZ_LT992456.1_424730_425798_-	COG2070, COG2070, Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]	NA|347aa|up_8|NZ_LT992456.1_425811_426852_-	COG4536, CorB, Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]	NA|105aa|up_7|NZ_LT992456.1_427220_427535_+	NA	NA|466aa|up_6|NZ_LT992456.1_427866_429264_-	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|155aa|up_5|NZ_LT992456.1_429414_429879_-	TIGR01994, Iron-sulfur_cluster_assembly_scaffold_protein_IscU, SUF system FeS assembly protein, NifU family	NA|417aa|up_4|NZ_LT992456.1_429868_431119_-	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|436aa|up_3|NZ_LT992456.1_431224_432532_-	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|254aa|up_2|NZ_LT992456.1_432630_433392_-	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|284aa|up_1|NZ_LT992456.1_433719_434571_+	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|65aa|up_0|NZ_LT992456.1_434804_434999_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|274aa|down_0|NZ_LT992456.1_435806_436628_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|232aa|down_1|NZ_LT992456.1_436645_437341_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|342aa|down_2|NZ_LT992456.1_437333_438359_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|99aa|down_3|NZ_LT992456.1_438608_438905_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|129aa|down_4|NZ_LT992456.1_438897_439284_-	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|293aa|down_5|NZ_LT992456.1_439985_440864_-	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|127aa|down_6|NZ_LT992456.1_441043_441424_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|119aa|down_7|NZ_LT992456.1_441581_441938_-	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|107aa|down_8|NZ_LT992456.1_442081_442402_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|180aa|down_9|NZ_LT992456.1_442551_443091_-	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA
GCF_900324205.1_1_1439	NZ_LT992456	Staphylococcus aureus isolate 1_1439 chromosome I	2	646681-646789	2	CRISPRCasFinder	no		DEDDh,cas3,csa3,WYL,TnsE_C,DinG	Orphan	TTTATGCAGTTGTGCGGTAGCATCCAACTGCGTTCCTTT	39	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,WYL,TnsE_C,DinG	NA|239aa|up_5|NZ_LT992456.1_641562_642279_-,NA|169aa|up_4|NZ_LT992456.1_642440_642947_-,NA	NA|75aa|up_9|NZ_LT992456.1_637685_637910_+	pfam11148, DUF2922, Protein of unknown function (DUF2922)	NA|310aa|up_8|NZ_LT992456.1_638102_639032_+	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|125aa|up_7|NZ_LT992456.1_639979_640354_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|263aa|up_6|NZ_LT992456.1_640605_641394_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|239aa|up_5|NZ_LT992456.1_641562_642279_-	NA	NA|169aa|up_4|NZ_LT992456.1_642440_642947_-	NA	NA|267aa|up_3|NZ_LT992456.1_643082_643883_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|240aa|up_2|NZ_LT992456.1_643866_644586_-	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|317aa|up_1|NZ_LT992456.1_644640_645591_-	pfam01032, FecCD, FecCD transport family	NA|296aa|up_0|NZ_LT992456.1_645741_646629_-	cd01143, YvrC, Periplasmic binding protein YvrC	NA|212aa|down_0|NZ_LT992456.1_646958_647594_-	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|554aa|down_1|NZ_LT992456.1_648078_649740_-	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|139aa|down_2|NZ_LT992456.1_649736_650153_-	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|337aa|down_3|NZ_LT992456.1_650428_651439_-	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|174aa|down_4|NZ_LT992456.1_651937_652459_-	pfam08741, YwhD, YwhD family	NA|432aa|down_5|NZ_LT992456.1_652486_653782_-	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|159aa|down_6|NZ_LT992456.1_653821_654298_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|179aa|down_7|NZ_LT992456.1_654467_655004_-	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|313aa|down_8|NZ_LT992456.1_655449_656388_-	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|209aa|down_9|NZ_LT992456.1_656657_657284_-	pfam04276, DUF443, Protein of unknown function (DUF443)
GCF_900324205.1_1_1439	NZ_LT992456	Staphylococcus aureus isolate 1_1439 chromosome I	3	1559215-1559348	1	PILER-CR	no		DEDDh,cas3,csa3,WYL,TnsE_C,DinG	Orphan	TATTGAAGAAGATACAA	17	0	0	NA	NA	NA	2	2	Orphan	DEDDh,cas3,csa3,WYL,TnsE_C,DinG	NA,NA|103aa|down_1|NZ_LT992456.1_1564482_1564791_-,NA|89aa|down_2|NZ_LT992456.1_1564934_1565201_-	NA|388aa|up_9|NZ_LT992456.1_1543528_1544692_+	cd17474, MFS_YfmO_like, Bacillus subtilis multidrug efflux protein YfmO and similar transporters of the Major Facilitator Superfamily	NA|204aa|up_8|NZ_LT992456.1_1544789_1545401_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|426aa|up_7|NZ_LT992456.1_1545947_1547225_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|608aa|up_6|NZ_LT992456.1_1548136_1549960_+	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|139aa|up_5|NZ_LT992456.1_1550098_1550515_+	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown]	NA|231aa|up_4|NZ_LT992456.1_1550745_1551438_+	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|255aa|up_3|NZ_LT992456.1_1551602_1552367_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|226aa|up_2|NZ_LT992456.1_1552523_1553201_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|518aa|up_1|NZ_LT992456.1_1553225_1554779_+	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|453aa|up_0|NZ_LT992456.1_1554895_1556254_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|289aa|down_0|NZ_LT992456.1_1563490_1564357_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|103aa|down_1|NZ_LT992456.1_1564482_1564791_-	NA	NA|89aa|down_2|NZ_LT992456.1_1564934_1565201_-	NA	NA|584aa|down_3|NZ_LT992456.1_1565484_1567236_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|398aa|down_4|NZ_LT992456.1_1567311_1568505_-	TIGR00675, Modification_methylase, DNA-methyltransferase (dcm)	NA|310aa|down_5|NZ_LT992456.1_1568600_1569530_+	pfam09019, EcoRII-C, EcoRII C terminal	NA|258aa|down_6|NZ_LT992456.1_1569772_1570546_+	pfam04507, DUF576, Csa1 family	NA|255aa|down_7|NZ_LT992456.1_1570657_1571422_+	pfam04507, DUF576, Csa1 family	NA|262aa|down_8|NZ_LT992456.1_1571669_1572455_+	pfam04507, DUF576, Csa1 family	NA|452aa|down_9|NZ_LT992456.1_1572451_1573807_+	cd00519, Lipase_3, Lipase (class 3)
GCF_900324205.1_1_1439	NZ_LT992456	Staphylococcus aureus isolate 1_1439 chromosome I	4	1562759-1562892	2	PILER-CR	no		DEDDh,cas3,csa3,WYL,TnsE_C,DinG	Orphan	TATTGAAGAAGATACAA	17	0	0	NA	NA	NA	2	2	Orphan	DEDDh,cas3,csa3,WYL,TnsE_C,DinG	NA,NA|103aa|down_1|NZ_LT992456.1_1564482_1564791_-,NA|89aa|down_2|NZ_LT992456.1_1564934_1565201_-	NA|204aa|up_9|NZ_LT992456.1_1544789_1545401_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|426aa|up_8|NZ_LT992456.1_1545947_1547225_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|608aa|up_7|NZ_LT992456.1_1548136_1549960_+	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|139aa|up_6|NZ_LT992456.1_1550098_1550515_+	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown]	NA|231aa|up_5|NZ_LT992456.1_1550745_1551438_+	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|255aa|up_4|NZ_LT992456.1_1551602_1552367_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|226aa|up_3|NZ_LT992456.1_1552523_1553201_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|518aa|up_2|NZ_LT992456.1_1553225_1554779_+	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|453aa|up_1|NZ_LT992456.1_1554895_1556254_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|1018aa|up_0|NZ_LT992456.1_1556722_1559776_+	pfam10425, SdrG_C_C, C-terminus of bacterial fibrinogen-binding adhesin	NA|289aa|down_0|NZ_LT992456.1_1563490_1564357_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|103aa|down_1|NZ_LT992456.1_1564482_1564791_-	NA	NA|89aa|down_2|NZ_LT992456.1_1564934_1565201_-	NA	NA|584aa|down_3|NZ_LT992456.1_1565484_1567236_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|398aa|down_4|NZ_LT992456.1_1567311_1568505_-	TIGR00675, Modification_methylase, DNA-methyltransferase (dcm)	NA|310aa|down_5|NZ_LT992456.1_1568600_1569530_+	pfam09019, EcoRII-C, EcoRII C terminal	NA|258aa|down_6|NZ_LT992456.1_1569772_1570546_+	pfam04507, DUF576, Csa1 family	NA|255aa|down_7|NZ_LT992456.1_1570657_1571422_+	pfam04507, DUF576, Csa1 family	NA|262aa|down_8|NZ_LT992456.1_1571669_1572455_+	pfam04507, DUF576, Csa1 family	NA|452aa|down_9|NZ_LT992456.1_1572451_1573807_+	cd00519, Lipase_3, Lipase (class 3)
GCF_900324205.1_1_1439	NZ_LT992456	Staphylococcus aureus isolate 1_1439 chromosome I	5	1587356-1587450	3	CRISPRCasFinder	no		DEDDh,cas3,csa3,WYL,TnsE_C,DinG	Orphan	TTGCTTCGCAACAACTGCATAAGAGCCT	28	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,WYL,TnsE_C,DinG	NA|105aa|up_8|NZ_LT992456.1_1579197_1579512_-,NA|121aa|up_0|NZ_LT992456.1_1586324_1586687_+,NA|249aa|down_8|NZ_LT992456.1_1597116_1597863_-	NA|140aa|up_9|NZ_LT992456.1_1576901_1577321_+	pfam07252, DUF1433, Protein of unknown function (DUF1433)	NA|105aa|up_8|NZ_LT992456.1_1579197_1579512_-	NA	NA|403aa|up_7|NZ_LT992456.1_1579517_1580726_-	cd07657, F-BAR_Fes_Fer, The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases	NA|128aa|up_6|NZ_LT992456.1_1580792_1581176_+	pfam07252, DUF1433, Protein of unknown function (DUF1433)	NA|137aa|up_5|NZ_LT992456.1_1581630_1582041_+	pfam07252, DUF1433, Protein of unknown function (DUF1433)	NA|133aa|up_4|NZ_LT992456.1_1582067_1582466_+	pfam07252, DUF1433, Protein of unknown function (DUF1433)	NA|141aa|up_3|NZ_LT992456.1_1582937_1583360_+	COG2128, COG2128, Uncharacterized conserved protein [Function unknown]	NA|513aa|up_2|NZ_LT992456.1_1583471_1585010_-	pfam03806, ABG_transport, AbgT putative transporter family	NA|273aa|up_1|NZ_LT992456.1_1585243_1586062_+	PRK08589, PRK08589, SDR family oxidoreductase	NA|121aa|up_0|NZ_LT992456.1_1586324_1586687_+	NA	NA|274aa|down_0|NZ_LT992456.1_1587635_1588457_+	COG0253, DapF, Diaminopimelate epimerase [Amino acid transport and metabolism]	NA|273aa|down_1|NZ_LT992456.1_1588467_1589286_+	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family	NA|434aa|down_2|NZ_LT992456.1_1589278_1590580_+	COG4408, COG4408, Uncharacterized protein conserved in bacteria [Function unknown]	NA|533aa|down_3|NZ_LT992456.1_1590722_1592321_+	TIGR02294, Nickel-binding_periplasmic_protein, nickel ABC transporter, nickel/metallophore periplasmic binding protein	NA|312aa|down_4|NZ_LT992456.1_1592333_1593269_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|290aa|down_5|NZ_LT992456.1_1593265_1594135_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|272aa|down_6|NZ_LT992456.1_1594131_1594947_+	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|250aa|down_7|NZ_LT992456.1_1594939_1595689_+	COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|249aa|down_8|NZ_LT992456.1_1597116_1597863_-	NA	NA|526aa|down_9|NZ_LT992456.1_1598057_1599635_+	COG0069, GltB, Glutamate synthase domain 2 [Amino acid transport and metabolism]
GCF_900324205.1_1_1439	NZ_LT992456	Staphylococcus aureus isolate 1_1439 chromosome I	6	1631702-1631780	4	CRISPRCasFinder	no		DEDDh,cas3,csa3,WYL,TnsE_C,DinG	Orphan	TGCAAGTTGGCGGGGCCCCAACA	23	1	1	1631725-1631757	NZ_LT992456.1_1014590-1014558	NA	1	1	Orphan	DEDDh,cas3,csa3,WYL,TnsE_C,DinG	NA|220aa|up_3|NZ_LT992456.1_1628626_1629286_-,NA|36aa|up_0|NZ_LT992456.1_1631274_1631382_+,NA|56aa|down_2|NZ_LT992456.1_1635837_1636005_+	NA|610aa|up_9|NZ_LT992456.1_1619114_1620944_+	pfam13520, AA_permease_2, Amino acid permease	NA|693aa|up_8|NZ_LT992456.1_1621082_1623161_-	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	NA|470aa|up_7|NZ_LT992456.1_1623298_1624708_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|219aa|up_6|NZ_LT992456.1_1625862_1626519_-	COG4990, COG4990, Uncharacterized protein conserved in bacteria [Function unknown]	NA|158aa|up_5|NZ_LT992456.1_1626631_1627105_+	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown]	NA|404aa|up_4|NZ_LT992456.1_1627227_1628439_-	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|220aa|up_3|NZ_LT992456.1_1628626_1629286_-	NA	NA|381aa|up_2|NZ_LT992456.1_1629345_1630488_-	TIGR00045, Glycerate_kinase, glycerate kinase	NA|129aa|up_1|NZ_LT992456.1_1630754_1631141_+	COG2246, COG2246, Predicted membrane protein [Function unknown]	NA|36aa|up_0|NZ_LT992456.1_1631274_1631382_+	NA	NA|588aa|down_0|NZ_LT992456.1_1632085_1633849_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|578aa|down_1|NZ_LT992456.1_1633873_1635607_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|56aa|down_2|NZ_LT992456.1_1635837_1636005_+	NA	NA|229aa|down_3|NZ_LT992456.1_1636059_1636746_+	COG0132, BioD, Dethiobiotin synthetase [Coenzyme metabolism]	NA|453aa|down_4|NZ_LT992456.1_1636723_1638082_+	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase	NA|336aa|down_5|NZ_LT992456.1_1638083_1639091_+	PRK06256, PRK06256, biotin synthase; Validated	NA|372aa|down_6|NZ_LT992456.1_1639068_1640184_+	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|231aa|down_7|NZ_LT992456.1_1640194_1640887_+	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|156aa|down_8|NZ_LT992456.1_1640897_1641365_+	pfam06177, QueT, QueT transporter	NA|326aa|down_9|NZ_LT992456.1_1641416_1642394_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin
GCF_900324205.1_1_1439	NZ_LT992456	Staphylococcus aureus isolate 1_1439 chromosome I	7	1763572-1763657	5	CRISPRCasFinder	no	WYL	DEDDh,cas3,csa3,WYL,TnsE_C,DinG	Unclear	CCAACTTGCACATTATTGTAAGCTGACTTT	30	1	6	1763602-1763627|1763602-1763627|1763602-1763627|1763602-1763627|1763602-1763627|1763602-1763627	NZ_LT992456.1_2477278-2477253|NZ_LT992456.1_439565-439540|NZ_LT992456.1_390460-390485|NZ_LT992456.1_435395-435420|NZ_LT992456.1_1972124-1972149|NZ_LT992456.1_2793628-2793653	NA	1	1	Orphan	DEDDh,cas3,csa3,WYL,TnsE_C,DinG	NA|110aa|up_8|NZ_LT992456.1_1753969_1754299_-,NA|78aa|up_1|NZ_LT992456.1_1762387_1762621_+,NA|65aa|down_6|NZ_LT992456.1_1770717_1770912_+	NA|291aa|up_9|NZ_LT992456.1_1752652_1753525_-	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|110aa|up_8|NZ_LT992456.1_1753969_1754299_-	NA	NA|246aa|up_7|NZ_LT992456.1_1754347_1755085_+	pfam02517, Abi, CAAX protease self-immunity	WYL|231aa|up_6|NZ_LT992456.1_1755109_1755802_-	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	NA|266aa|up_5|NZ_LT992456.1_1756186_1756984_+	COG0483, SuhB, Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family [Carbohydrate transport and metabolism]	NA|316aa|up_4|NZ_LT992456.1_1757116_1758064_+	PRK09379, PRK09379, LytR family transcriptional regulator	NA|985aa|up_3|NZ_LT992456.1_1758665_1761620_+	COG3383, COG3383, Uncharacterized anaerobic dehydrogenase [General function prediction only]	NA|158aa|up_2|NZ_LT992456.1_1761619_1762093_+	COG2427, COG2427, Uncharacterized conserved protein [Function unknown]	NA|78aa|up_1|NZ_LT992456.1_1762387_1762621_+	NA	NA|259aa|up_0|NZ_LT992456.1_1762642_1763419_+	COG4193, LytD, Beta- N-acetylglucosaminidase [Carbohydrate transport and metabolism]	NA|375aa|down_0|NZ_LT992456.1_1764027_1765152_+	PRK06753, PRK06753, hypothetical protein; Provisional	NA|318aa|down_1|NZ_LT992456.1_1765243_1766197_-	cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains	NA|167aa|down_2|NZ_LT992456.1_1766559_1767060_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|141aa|down_3|NZ_LT992456.1_1767296_1767719_-	COG3296, COG3296, Uncharacterized protein conserved in bacteria [Function unknown]	NA|361aa|down_4|NZ_LT992456.1_1767966_1769049_+	pfam02317, Octopine_DH, NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain	NA|467aa|down_5|NZ_LT992456.1_1769143_1770544_+	TIGR00931, Uncharacterized_Na+/H+_antiporter_HI_1107, Na+/H+ antiporter NhaC	NA|65aa|down_6|NZ_LT992456.1_1770717_1770912_+	NA	NA|270aa|down_7|NZ_LT992456.1_1770980_1771790_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|652aa|down_8|NZ_LT992456.1_1772399_1774355_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|248aa|down_9|NZ_LT992456.1_1774380_1775124_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family
GCF_900324205.1_1_1439	NZ_LT992456	Staphylococcus aureus isolate 1_1439 chromosome I	8	1983048-1983260	6	CRISPRCasFinder	no		DEDDh,cas3,csa3,WYL,TnsE_C,DinG	Orphan	CATCAAAGTAGCATGGCATGACACCAAGCTTCCACAACAGCACATCA	47	0	0	NA	NA	NA	2	2	Orphan	DEDDh,cas3,csa3,WYL,TnsE_C,DinG	NA|107aa|up_0|NZ_LT992456.1_1982693_1983014_-,NA|46aa|down_4|NZ_LT992456.1_1986260_1986398_+	NA|147aa|up_9|NZ_LT992456.1_1974167_1974608_+	PRK00006, fabZ, 3-hydroxyacyl-ACP dehydratase FabZ	NA|147aa|up_8|NZ_LT992456.1_1974664_1975105_-	pfam14183, YwpF, YwpF-like protein	NA|132aa|up_7|NZ_LT992456.1_1975298_1975694_+	pfam00436, SSB, Single-strand binding protein family	NA|232aa|up_6|NZ_LT992456.1_1976082_1976778_+	pfam06737, Transglycosylas, Transglycosylase-like domain	NA|230aa|up_5|NZ_LT992456.1_1977164_1977854_+	TIGR04306, salvage_TenA, thiaminase II	NA|277aa|up_4|NZ_LT992456.1_1977846_1978677_+	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed	NA|264aa|up_3|NZ_LT992456.1_1978660_1979452_+	PRK09355, PRK09355, hydroxyethylthiazole kinase; Validated	NA|214aa|up_2|NZ_LT992456.1_1979453_1980095_+	PRK00043, thiE, thiamine phosphate synthase	NA|291aa|up_1|NZ_LT992456.1_1980180_1981053_+	PRK02463, PRK02463, OxaA-like protein precursor; Provisional	NA|107aa|up_0|NZ_LT992456.1_1982693_1983014_-	NA	NA|216aa|down_0|NZ_LT992456.1_1983293_1983941_-	COG1418, COG1418, Predicted HD superfamily hydrolase [General function prediction only]	NA|495aa|down_1|NZ_LT992456.1_1983968_1985453_-	TIGR04265, bac_cardiolipin, cardiolipin synthase	NA|98aa|down_2|NZ_LT992456.1_1985618_1985912_+	cd10152, SaCsoR-like_DUF156, Staphylococcus aureus copper-sensitive operon repressor (CsoR), and related domains; this family was previously known as part of DUF156	NA|70aa|down_3|NZ_LT992456.1_1985923_1986133_+	cd00371, HMA, Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones	NA|46aa|down_4|NZ_LT992456.1_1986260_1986398_+	NA	NA|401aa|down_5|NZ_LT992456.1_1986661_1987864_-	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|357aa|down_6|NZ_LT992456.1_1988181_1989252_+	PRK01966, ddl, D-alanine--D-alanine ligase	NA|452aa|down_7|NZ_LT992456.1_1989266_1990622_+	COG0770, MurF, UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]	NA|507aa|down_8|NZ_LT992456.1_1991137_1992658_+	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	NA|232aa|down_9|NZ_LT992456.1_1993010_1993706_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
GCF_900324205.1_1_1439	NZ_LT992456	Staphylococcus aureus isolate 1_1439 chromosome I	9	2354741-2354823	7	CRISPRCasFinder	no		DEDDh,cas3,csa3,WYL,TnsE_C,DinG	Orphan	GTAAGCTGACTTTTTCGTCAGCTTC	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,WYL,TnsE_C,DinG	NA,NA	NA|383aa|up_9|NZ_LT992456.1_2344264_2345413_+	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|408aa|up_8|NZ_LT992456.1_2345412_2346636_+	PRK01565, PRK01565, thiamine biosynthesis protein ThiI; Provisional	NA|257aa|up_7|NZ_LT992456.1_2346679_2347450_+	PRK10621, PRK10621, hypothetical protein; Provisional	NA|165aa|up_6|NZ_LT992456.1_2347547_2348042_+	PRK00522, tpx, thiol peroxidase	NA|316aa|up_5|NZ_LT992456.1_2348164_2349112_+	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|401aa|up_4|NZ_LT992456.1_2349199_2350402_+	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|167aa|up_3|NZ_LT992456.1_2350648_2351149_-	pfam00582, Usp, Universal stress protein family	NA|373aa|up_2|NZ_LT992456.1_2351289_2352408_+	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains	NA|352aa|up_1|NZ_LT992456.1_2352723_2353779_-	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|230aa|up_0|NZ_LT992456.1_2353953_2354643_+	PRK00685, PRK00685, metal-dependent hydrolase; Provisional	NA|138aa|down_0|NZ_LT992456.1_2355148_2355562_-	pfam00582, Usp, Universal stress protein family	NA|433aa|down_1|NZ_LT992456.1_2355766_2357065_+	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]	NA|314aa|down_2|NZ_LT992456.1_2357434_2358376_+	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only]	NA|1066aa|down_3|NZ_LT992456.1_2358396_2361594_+	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]	NA|410aa|down_4|NZ_LT992456.1_2362042_2363272_+	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|286aa|down_5|NZ_LT992456.1_2363466_2364324_+	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|315aa|down_6|NZ_LT992456.1_2364323_2365268_+	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|323aa|down_7|NZ_LT992456.1_2365536_2366505_+	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|586aa|down_8|NZ_LT992456.1_2366526_2368284_+	PRK06354, PRK06354, pyruvate kinase; Provisional	NA|454aa|down_9|NZ_LT992456.1_2368627_2369989_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
