assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900324215.1_3_LA_115	NZ_LT992464	Staphylococcus aureus isolate 3_LA_115 chromosome I	1	42150-42283	1	PILER-CR	no		WYL,TnsE_C,csa3,DEDDh,cas3,DinG	Orphan	TATTGAAGAAGATACAA	17	0	0	NA	NA	NA	2	2	Orphan	WYL,TnsE_C,csa3,DEDDh,cas3,DinG	NA,NA|103aa|down_1|NZ_LT992464.1_47417_47726_-,NA|89aa|down_2|NZ_LT992464.1_47869_48136_-	NA|388aa|up_9|NZ_LT992464.1_26464_27628_+	cd17474, MFS_YfmO_like, Bacillus subtilis multidrug efflux protein YfmO and similar transporters of the Major Facilitator Superfamily	NA|204aa|up_8|NZ_LT992464.1_27725_28337_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|426aa|up_7|NZ_LT992464.1_28883_30161_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|608aa|up_6|NZ_LT992464.1_31072_32896_+	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|139aa|up_5|NZ_LT992464.1_33034_33451_+	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown]	NA|231aa|up_4|NZ_LT992464.1_33681_34374_+	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|263aa|up_3|NZ_LT992464.1_34513_35302_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|226aa|up_2|NZ_LT992464.1_35458_36136_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|518aa|up_1|NZ_LT992464.1_36160_37714_+	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|453aa|up_0|NZ_LT992464.1_37830_39189_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|289aa|down_0|NZ_LT992464.1_46425_47292_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|103aa|down_1|NZ_LT992464.1_47417_47726_-	NA	NA|89aa|down_2|NZ_LT992464.1_47869_48136_-	NA	NA|584aa|down_3|NZ_LT992464.1_48419_50171_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|398aa|down_4|NZ_LT992464.1_50246_51440_-	TIGR00675, Modification_methylase, DNA-methyltransferase (dcm)	NA|310aa|down_5|NZ_LT992464.1_51535_52465_+	pfam09019, EcoRII-C, EcoRII C terminal	NA|258aa|down_6|NZ_LT992464.1_52707_53481_+	pfam04507, DUF576, Csa1 family	NA|255aa|down_7|NZ_LT992464.1_53592_54357_+	pfam04507, DUF576, Csa1 family	NA|262aa|down_8|NZ_LT992464.1_54604_55390_+	pfam04507, DUF576, Csa1 family	NA|452aa|down_9|NZ_LT992464.1_55386_56742_+	cd00519, Lipase_3, Lipase (class 3)
GCF_900324215.1_3_LA_115	NZ_LT992464	Staphylococcus aureus isolate 3_LA_115 chromosome I	2	45694-45827	2	PILER-CR	no		WYL,TnsE_C,csa3,DEDDh,cas3,DinG	Orphan	TATTGAAGAAGATACAA	17	0	0	NA	NA	NA	2	2	Orphan	WYL,TnsE_C,csa3,DEDDh,cas3,DinG	NA,NA|103aa|down_1|NZ_LT992464.1_47417_47726_-,NA|89aa|down_2|NZ_LT992464.1_47869_48136_-	NA|204aa|up_9|NZ_LT992464.1_27725_28337_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|426aa|up_8|NZ_LT992464.1_28883_30161_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|608aa|up_7|NZ_LT992464.1_31072_32896_+	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|139aa|up_6|NZ_LT992464.1_33034_33451_+	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown]	NA|231aa|up_5|NZ_LT992464.1_33681_34374_+	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|263aa|up_4|NZ_LT992464.1_34513_35302_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|226aa|up_3|NZ_LT992464.1_35458_36136_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|518aa|up_2|NZ_LT992464.1_36160_37714_+	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|453aa|up_1|NZ_LT992464.1_37830_39189_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|1018aa|up_0|NZ_LT992464.1_39657_42711_+	pfam10425, SdrG_C_C, C-terminus of bacterial fibrinogen-binding adhesin	NA|289aa|down_0|NZ_LT992464.1_46425_47292_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|103aa|down_1|NZ_LT992464.1_47417_47726_-	NA	NA|89aa|down_2|NZ_LT992464.1_47869_48136_-	NA	NA|584aa|down_3|NZ_LT992464.1_48419_50171_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|398aa|down_4|NZ_LT992464.1_50246_51440_-	TIGR00675, Modification_methylase, DNA-methyltransferase (dcm)	NA|310aa|down_5|NZ_LT992464.1_51535_52465_+	pfam09019, EcoRII-C, EcoRII C terminal	NA|258aa|down_6|NZ_LT992464.1_52707_53481_+	pfam04507, DUF576, Csa1 family	NA|255aa|down_7|NZ_LT992464.1_53592_54357_+	pfam04507, DUF576, Csa1 family	NA|262aa|down_8|NZ_LT992464.1_54604_55390_+	pfam04507, DUF576, Csa1 family	NA|452aa|down_9|NZ_LT992464.1_55386_56742_+	cd00519, Lipase_3, Lipase (class 3)
GCF_900324215.1_3_LA_115	NZ_LT992464	Staphylococcus aureus isolate 3_LA_115 chromosome I	3	70291-70385	1	CRISPRCasFinder	no		WYL,TnsE_C,csa3,DEDDh,cas3,DinG	Orphan	TTGCTTCGCAACAACTGCATAAGAGCCT	28	0	0	NA	NA	NA	1	1	Orphan	WYL,TnsE_C,csa3,DEDDh,cas3,DinG	NA|105aa|up_8|NZ_LT992464.1_62132_62447_-,NA|121aa|up_0|NZ_LT992464.1_69259_69622_+,NA|249aa|down_9|NZ_LT992464.1_80052_80799_-	NA|140aa|up_9|NZ_LT992464.1_59836_60256_+	pfam07252, DUF1433, Protein of unknown function (DUF1433)	NA|105aa|up_8|NZ_LT992464.1_62132_62447_-	NA	NA|403aa|up_7|NZ_LT992464.1_62452_63661_-	cd07657, F-BAR_Fes_Fer, The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases	NA|128aa|up_6|NZ_LT992464.1_63727_64111_+	pfam07252, DUF1433, Protein of unknown function (DUF1433)	NA|137aa|up_5|NZ_LT992464.1_64565_64976_+	pfam07252, DUF1433, Protein of unknown function (DUF1433)	NA|133aa|up_4|NZ_LT992464.1_65002_65401_+	pfam07252, DUF1433, Protein of unknown function (DUF1433)	NA|141aa|up_3|NZ_LT992464.1_65872_66295_+	COG2128, COG2128, Uncharacterized conserved protein [Function unknown]	NA|513aa|up_2|NZ_LT992464.1_66406_67945_-	pfam03806, ABG_transport, AbgT putative transporter family	NA|273aa|up_1|NZ_LT992464.1_68178_68997_+	PRK08589, PRK08589, SDR family oxidoreductase	NA|121aa|up_0|NZ_LT992464.1_69259_69622_+	NA	NA|274aa|down_0|NZ_LT992464.1_70570_71392_+	COG0253, DapF, Diaminopimelate epimerase [Amino acid transport and metabolism]	NA|273aa|down_1|NZ_LT992464.1_71402_72221_+	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family	NA|434aa|down_2|NZ_LT992464.1_72213_73515_+	COG4408, COG4408, Uncharacterized protein conserved in bacteria [Function unknown]	NA|533aa|down_3|NZ_LT992464.1_73657_75256_+	TIGR02294, Nickel-binding_periplasmic_protein, nickel ABC transporter, nickel/metallophore periplasmic binding protein	NA|312aa|down_4|NZ_LT992464.1_75268_76204_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|290aa|down_5|NZ_LT992464.1_76200_77070_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|272aa|down_6|NZ_LT992464.1_77066_77882_+	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|250aa|down_7|NZ_LT992464.1_77874_78624_+	COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|398aa|down_8|NZ_LT992464.1_78635_79829_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|249aa|down_9|NZ_LT992464.1_80052_80799_-	NA
GCF_900324215.1_3_LA_115	NZ_LT992464	Staphylococcus aureus isolate 3_LA_115 chromosome I	4	114638-114716	2	CRISPRCasFinder	no		WYL,TnsE_C,csa3,DEDDh,cas3,DinG	Orphan	TGCAAGTTGGCGGGGCCCCAACA	23	1	1	114661-114693	NZ_LT992464.1_2373321-2373289	NA	1	1	Orphan	WYL,TnsE_C,csa3,DEDDh,cas3,DinG	NA|220aa|up_3|NZ_LT992464.1_111562_112222_-,NA|36aa|up_0|NZ_LT992464.1_114210_114318_+,NA|56aa|down_2|NZ_LT992464.1_118773_118941_+	NA|693aa|up_9|NZ_LT992464.1_104018_106097_-	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	NA|470aa|up_8|NZ_LT992464.1_106234_107644_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|269aa|up_7|NZ_LT992464.1_107929_108736_+	TIGR03729, acc_ester, putative phosphoesterase	NA|219aa|up_6|NZ_LT992464.1_108798_109455_-	COG4990, COG4990, Uncharacterized protein conserved in bacteria [Function unknown]	NA|158aa|up_5|NZ_LT992464.1_109567_110041_+	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown]	NA|404aa|up_4|NZ_LT992464.1_110163_111375_-	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|220aa|up_3|NZ_LT992464.1_111562_112222_-	NA	NA|381aa|up_2|NZ_LT992464.1_112281_113424_-	TIGR00045, Glycerate_kinase, glycerate kinase	NA|129aa|up_1|NZ_LT992464.1_113690_114077_+	COG2246, COG2246, Predicted membrane protein [Function unknown]	NA|36aa|up_0|NZ_LT992464.1_114210_114318_+	NA	NA|588aa|down_0|NZ_LT992464.1_115021_116785_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|578aa|down_1|NZ_LT992464.1_116809_118543_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|56aa|down_2|NZ_LT992464.1_118773_118941_+	NA	NA|229aa|down_3|NZ_LT992464.1_118995_119682_+	COG0132, BioD, Dethiobiotin synthetase [Coenzyme metabolism]	NA|453aa|down_4|NZ_LT992464.1_119659_121018_+	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase	NA|336aa|down_5|NZ_LT992464.1_121019_122027_+	PRK06256, PRK06256, biotin synthase; Validated	NA|372aa|down_6|NZ_LT992464.1_122004_123120_+	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|231aa|down_7|NZ_LT992464.1_123130_123823_+	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|156aa|down_8|NZ_LT992464.1_123833_124301_+	pfam06177, QueT, QueT transporter	NA|326aa|down_9|NZ_LT992464.1_124352_125330_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin
GCF_900324215.1_3_LA_115	NZ_LT992464	Staphylococcus aureus isolate 3_LA_115 chromosome I	5	410370-410520	3	CRISPRCasFinder	no	TnsE_C,csa3	WYL,TnsE_C,csa3,DEDDh,cas3,DinG	Type I-A	TGCATAAGAGCCCCTTACAACTAAAGTT	28	0	0	NA	NA	NA	2	2	Orphan	WYL,TnsE_C,csa3,DEDDh,cas3,DinG	NA|31aa|up_2|NZ_LT992464.1_408569_408662_-,NA|53aa|up_1|NZ_LT992464.1_409097_409256_-,NA|35aa|up_0|NZ_LT992464.1_409935_410040_+,NA|364aa|down_0|NZ_LT992464.1_410537_411629_-,NA|77aa|down_5|NZ_LT992464.1_415416_415647_+	TnsE_C|135aa|up_9|NZ_LT992464.1_402330_402735_+	pfam18623, TnsE_C, TnsE C-terminal domain	NA|97aa|up_8|NZ_LT992464.1_402859_403150_+	pfam11867, DUF3387, Domain of unknown function (DUF3387)	NA|490aa|up_7|NZ_LT992464.1_403209_404679_+	pfam18185, STALD, Sir2- and TIR-associating SLOG family	NA|345aa|up_6|NZ_LT992464.1_404772_405807_+	pfam13676, TIR_2, TIR domain	NA|203aa|up_5|NZ_LT992464.1_405834_406443_+	pfam08937, DUF1863, MTH538 TIR-like domain (DUF1863)	NA|261aa|up_4|NZ_LT992464.1_406732_407515_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|up_3|NZ_LT992464.1_407582_408440_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|31aa|up_2|NZ_LT992464.1_408569_408662_-	NA	NA|53aa|up_1|NZ_LT992464.1_409097_409256_-	NA	NA|35aa|up_0|NZ_LT992464.1_409935_410040_+	NA	NA|364aa|down_0|NZ_LT992464.1_410537_411629_-	NA	NA|327aa|down_1|NZ_LT992464.1_411894_412875_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	csa3|107aa|down_2|NZ_LT992464.1_412876_413197_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|222aa|down_3|NZ_LT992464.1_413348_414014_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|313aa|down_4|NZ_LT992464.1_414447_415386_+	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|77aa|down_5|NZ_LT992464.1_415416_415647_+	NA	NA|458aa|down_6|NZ_LT992464.1_416318_417692_+	pfam01878, EVE, EVE domain	NA|138aa|down_7|NZ_LT992464.1_418149_418563_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|148aa|down_8|NZ_LT992464.1_418762_419206_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|237aa|down_9|NZ_LT992464.1_419326_420037_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase
GCF_900324215.1_3_LA_115	NZ_LT992464	Staphylococcus aureus isolate 3_LA_115 chromosome I	6	465939-466151	4	CRISPRCasFinder	no		WYL,TnsE_C,csa3,DEDDh,cas3,DinG	Orphan	CATCAAAGTAGCATGGCATGACACCAAGCTTCCACAACAGCACATCA	47	0	0	NA	NA	NA	2	2	Orphan	WYL,TnsE_C,csa3,DEDDh,cas3,DinG	NA|107aa|up_0|NZ_LT992464.1_465584_465905_-,NA|46aa|down_4|NZ_LT992464.1_469151_469289_+	NA|147aa|up_9|NZ_LT992464.1_457057_457498_+	PRK00006, fabZ, 3-hydroxyacyl-ACP dehydratase FabZ	NA|147aa|up_8|NZ_LT992464.1_457554_457995_-	pfam14183, YwpF, YwpF-like protein	NA|132aa|up_7|NZ_LT992464.1_458188_458584_+	pfam00436, SSB, Single-strand binding protein family	NA|232aa|up_6|NZ_LT992464.1_458972_459668_+	pfam06737, Transglycosylas, Transglycosylase-like domain	NA|230aa|up_5|NZ_LT992464.1_460054_460744_+	TIGR04306, salvage_TenA, thiaminase II	NA|277aa|up_4|NZ_LT992464.1_460736_461567_+	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed	NA|264aa|up_3|NZ_LT992464.1_461550_462342_+	PRK09355, PRK09355, hydroxyethylthiazole kinase; Validated	NA|214aa|up_2|NZ_LT992464.1_462343_462985_+	PRK00043, thiE, thiamine phosphate synthase	NA|291aa|up_1|NZ_LT992464.1_463070_463943_+	PRK02463, PRK02463, OxaA-like protein precursor; Provisional	NA|107aa|up_0|NZ_LT992464.1_465584_465905_-	NA	NA|216aa|down_0|NZ_LT992464.1_466184_466832_-	COG1418, COG1418, Predicted HD superfamily hydrolase [General function prediction only]	NA|495aa|down_1|NZ_LT992464.1_466859_468344_-	TIGR04265, bac_cardiolipin, cardiolipin synthase	NA|98aa|down_2|NZ_LT992464.1_468509_468803_+	cd10152, SaCsoR-like_DUF156, Staphylococcus aureus copper-sensitive operon repressor (CsoR), and related domains; this family was previously known as part of DUF156	NA|70aa|down_3|NZ_LT992464.1_468814_469024_+	cd00371, HMA, Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones	NA|46aa|down_4|NZ_LT992464.1_469151_469289_+	NA	NA|401aa|down_5|NZ_LT992464.1_469552_470755_-	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|357aa|down_6|NZ_LT992464.1_471072_472143_+	PRK01966, ddl, D-alanine--D-alanine ligase	NA|452aa|down_7|NZ_LT992464.1_472157_473513_+	COG0770, MurF, UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]	NA|507aa|down_8|NZ_LT992464.1_474028_475549_+	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	NA|232aa|down_9|NZ_LT992464.1_475901_476597_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
GCF_900324215.1_3_LA_115	NZ_LT992464	Staphylococcus aureus isolate 3_LA_115 chromosome I	7	836450-836532	5	CRISPRCasFinder	no		WYL,TnsE_C,csa3,DEDDh,cas3,DinG	Orphan	GTAAGCTGACTTTTTCGTCAGCTTC	25	0	0	NA	NA	NA	1	1	Orphan	WYL,TnsE_C,csa3,DEDDh,cas3,DinG	NA,NA	NA|383aa|up_9|NZ_LT992464.1_825973_827122_+	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|408aa|up_8|NZ_LT992464.1_827121_828345_+	PRK01565, PRK01565, thiamine biosynthesis protein ThiI; Provisional	NA|257aa|up_7|NZ_LT992464.1_828388_829159_+	PRK10621, PRK10621, hypothetical protein; Provisional	NA|165aa|up_6|NZ_LT992464.1_829256_829751_+	PRK00522, tpx, thiol peroxidase	NA|316aa|up_5|NZ_LT992464.1_829873_830821_+	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|401aa|up_4|NZ_LT992464.1_830908_832111_+	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|167aa|up_3|NZ_LT992464.1_832357_832858_-	pfam00582, Usp, Universal stress protein family	NA|373aa|up_2|NZ_LT992464.1_832998_834117_+	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains	NA|352aa|up_1|NZ_LT992464.1_834432_835488_-	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|230aa|up_0|NZ_LT992464.1_835662_836352_+	PRK00685, PRK00685, metal-dependent hydrolase; Provisional	NA|138aa|down_0|NZ_LT992464.1_836857_837271_-	pfam00582, Usp, Universal stress protein family	NA|433aa|down_1|NZ_LT992464.1_837475_838774_+	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]	NA|314aa|down_2|NZ_LT992464.1_839143_840085_+	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only]	NA|1066aa|down_3|NZ_LT992464.1_840105_843303_+	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]	NA|410aa|down_4|NZ_LT992464.1_843751_844981_+	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|286aa|down_5|NZ_LT992464.1_845175_846033_+	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|315aa|down_6|NZ_LT992464.1_846032_846977_+	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|323aa|down_7|NZ_LT992464.1_847245_848214_+	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|586aa|down_8|NZ_LT992464.1_848235_849993_+	PRK06354, PRK06354, pyruvate kinase; Provisional	NA|454aa|down_9|NZ_LT992464.1_850336_851698_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
GCF_900324215.1_3_LA_115	NZ_LT992464	Staphylococcus aureus isolate 3_LA_115 chromosome I	8	1761980-1762060	6	CRISPRCasFinder	no		WYL,TnsE_C,csa3,DEDDh,cas3,DinG	Orphan	GGGAGTGGGAGAGAAATGATAAAGA	25	1	1	1762005-1762035	NZ_LT992464.1_1816989-1816959	NA	1	1	Orphan	WYL,TnsE_C,csa3,DEDDh,cas3,DinG	NA|81aa|up_8|NZ_LT992464.1_1753278_1753521_+,NA	NA|328aa|up_9|NZ_LT992464.1_1752284_1753268_+	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|81aa|up_8|NZ_LT992464.1_1753278_1753521_+	NA	NA|350aa|up_7|NZ_LT992464.1_1753587_1754637_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|466aa|up_6|NZ_LT992464.1_1754704_1756102_-	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|155aa|up_5|NZ_LT992464.1_1756252_1756717_-	TIGR01994, Iron-sulfur_cluster_assembly_scaffold_protein_IscU, SUF system FeS assembly protein, NifU family	NA|417aa|up_4|NZ_LT992464.1_1756706_1757957_-	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|436aa|up_3|NZ_LT992464.1_1758062_1759370_-	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|254aa|up_2|NZ_LT992464.1_1759468_1760230_-	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|284aa|up_1|NZ_LT992464.1_1760557_1761409_+	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|65aa|up_0|NZ_LT992464.1_1761642_1761837_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|274aa|down_0|NZ_LT992464.1_1762644_1763466_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|232aa|down_1|NZ_LT992464.1_1763483_1764179_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|342aa|down_2|NZ_LT992464.1_1764171_1765197_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|99aa|down_3|NZ_LT992464.1_1765446_1765743_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|129aa|down_4|NZ_LT992464.1_1765735_1766122_-	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|293aa|down_5|NZ_LT992464.1_1766823_1767702_-	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|127aa|down_6|NZ_LT992464.1_1767881_1768262_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|119aa|down_7|NZ_LT992464.1_1768419_1768776_-	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|107aa|down_8|NZ_LT992464.1_1768919_1769240_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|180aa|down_9|NZ_LT992464.1_1769389_1769929_-	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA
GCF_900324215.1_3_LA_115	NZ_LT992464	Staphylococcus aureus isolate 3_LA_115 chromosome I	9	1973656-1973764	7	CRISPRCasFinder	no		WYL,TnsE_C,csa3,DEDDh,cas3,DinG	Orphan	TTTATGCAGTTGTGCGGTAGCATCCAACTGCGTTCCTTT	39	0	0	NA	NA	NA	1	1	Orphan	WYL,TnsE_C,csa3,DEDDh,cas3,DinG	NA|239aa|up_5|NZ_LT992464.1_1968537_1969254_-,NA|169aa|up_4|NZ_LT992464.1_1969415_1969922_-,NA	NA|75aa|up_9|NZ_LT992464.1_1964661_1964886_+	pfam11148, DUF2922, Protein of unknown function (DUF2922)	NA|310aa|up_8|NZ_LT992464.1_1965078_1966008_+	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|125aa|up_7|NZ_LT992464.1_1966954_1967329_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|263aa|up_6|NZ_LT992464.1_1967580_1968369_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|239aa|up_5|NZ_LT992464.1_1968537_1969254_-	NA	NA|169aa|up_4|NZ_LT992464.1_1969415_1969922_-	NA	NA|267aa|up_3|NZ_LT992464.1_1970057_1970858_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|240aa|up_2|NZ_LT992464.1_1970841_1971561_-	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|317aa|up_1|NZ_LT992464.1_1971615_1972566_-	pfam01032, FecCD, FecCD transport family	NA|296aa|up_0|NZ_LT992464.1_1972716_1973604_-	cd01143, YvrC, Periplasmic binding protein YvrC	NA|212aa|down_0|NZ_LT992464.1_1973933_1974569_-	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|554aa|down_1|NZ_LT992464.1_1975053_1976715_-	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|139aa|down_2|NZ_LT992464.1_1976711_1977128_-	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|337aa|down_3|NZ_LT992464.1_1977403_1978414_-	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|174aa|down_4|NZ_LT992464.1_1978912_1979434_-	pfam08741, YwhD, YwhD family	NA|432aa|down_5|NZ_LT992464.1_1979461_1980757_-	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|159aa|down_6|NZ_LT992464.1_1980796_1981273_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|179aa|down_7|NZ_LT992464.1_1981442_1981979_-	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|313aa|down_8|NZ_LT992464.1_1982424_1983363_-	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|209aa|down_9|NZ_LT992464.1_1983632_1984259_-	pfam04276, DUF443, Protein of unknown function (DUF443)
