The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LT992471	Staphylococcus aureus isolate 17_LA_343 chromosome I	2922778	391452	438212	2922778	tail,capsid,terminase,plate,portal,head,holin,protease,integrase	Staphylococcus_phage(92.86%)	70	386014:386029	446262:446277
386014:386029	attL	ATTTTCTAATAAATGA	NA	NA	NA	NA
WP_031794994.1|391452_392658_-|integrase	site-specific integrase	integrase	A0A1X9H094	Staphylococcus_phage	99.5	2.5e-221
WP_000191459.1|392783_393398_+	hypothetical protein	NA	A7TW88	Staphylococcus_phage	100.0	7.9e-107
WP_078067907.1|393394_393541_-	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	95.8	1.7e-15
WP_000449655.1|393628_394024_-	hypothetical protein	NA	A0A2I6PEJ7	Staphylococcus_phage	100.0	3.8e-70
WP_031910435.1|394052_394487_-	hypothetical protein	NA	A0A2D1G561	Staphylococcus_phage	97.2	1.8e-25
WP_031910436.1|394504_394966_-	toxin	NA	A0A2D1G566	Staphylococcus_phage	98.0	3.0e-82
WP_001260487.1|394978_395302_-	helix-turn-helix transcriptional regulator	NA	A0A0H3U2V8	Staphylococcus_phage	100.0	2.0e-53
WP_000272859.1|395465_395714_+	helix-turn-helix transcriptional regulator	NA	A0A2K9VBT6	Staphylococcus_phage	100.0	1.7e-39
WP_000435362.1|395726_396170_+	hypothetical protein	NA	A7TWF2	Staphylococcus_phage	99.3	3.4e-75
WP_000771849.1|396184_396334_+	hypothetical protein	NA	D2JGJ0	Staphylococcus_phage	100.0	1.4e-20
WP_000362644.1|396374_396587_-	hypothetical protein	NA	D2JGJ1	Staphylococcus_phage	100.0	7.6e-33
WP_001148860.1|396656_396854_+	hypothetical protein	NA	A7TWF5	Staphylococcus_phage	100.0	4.6e-24
WP_000773059.1|396840_397221_-	DUF2513 domain-containing protein	NA	Q4ZCQ5	Staphylococcus_virus	100.0	5.8e-68
WP_000939498.1|397287_397431_+	hypothetical protein	NA	W5R8I6	Staphylococcus_phage	100.0	2.5e-16
WP_000642492.1|397420_397630_-	hypothetical protein	NA	W5R9J5	Staphylococcus_phage	100.0	1.2e-30
WP_001025401.1|397685_397931_+	DUF2829 domain-containing protein	NA	A0A2I6PF15	Staphylococcus_phage	100.0	5.1e-41
WP_016170627.1|397899_398265_-	hypothetical protein	NA	A0A2I6PF07	Staphylococcus_phage	99.2	1.2e-62
WP_001097552.1|398319_398535_+	hypothetical protein	NA	A0A2I6PF01	Staphylococcus_phage	100.0	1.9e-31
WP_016187436.1|398559_398823_+	helix-turn-helix domain-containing protein	NA	M9QRR6	Staphylococcus_phage	100.0	9.7e-46
WP_001285948.1|398835_398997_+	DUF1270 domain-containing protein	NA	A9CR58	Staphylococcus_phage	98.1	1.1e-20
WP_000174994.1|399075_399399_+	hypothetical protein	NA	A0A2I6PF12	Staphylococcus_phage	100.0	5.9e-53
WP_000985976.1|399413_399776_+	hypothetical protein	NA	A0A2I6PF03	Staphylococcus_phage	100.0	4.9e-56
WP_031794951.1|399772_400939_+	DUF2800 domain-containing protein	NA	Q8SDR9	Staphylococcus_virus	99.0	6.5e-219
WP_000645049.1|400965_401523_+	DUF2815 family protein	NA	A0A2K9VBT2	Staphylococcus_phage	95.7	1.3e-92
WP_078091559.1|401591_403544_+	DNA polymerase	NA	A0A2I6PF18	Staphylococcus_phage	99.5	0.0e+00
WP_001164629.1|403556_403742_+	DUF3113 family protein	NA	A0A2I6PEM8	Staphylococcus_phage	100.0	7.0e-27
WP_000113974.1|403741_404143_+	PVL family protein	NA	A0A2I6PEL5	Staphylococcus_phage	100.0	1.2e-68
WP_031775959.1|404142_404397_+	DUF3310 domain-containing protein	NA	A0A2I6PDN8	Staphylococcus_phage	98.8	4.8e-42
WP_000177805.1|404396_404645_+	hypothetical protein	NA	A0A0K1LL46	Staphylococcus_phage	97.6	3.0e-41
WP_031903369.1|404657_405059_+	hypothetical protein	NA	A0A0N7E0T5	Staphylococcus_phage	91.7	5.4e-64
WP_000979209.1|405055_405403_+	hypothetical protein	NA	D2JGL4	Staphylococcus_phage	100.0	5.9e-59
WP_000144708.1|405399_405708_+	hypothetical protein	NA	Q4ZBK6	Staphylococcus_phage	100.0	8.1e-52
WP_001065023.1|405700_405937_+	DUF1024 family protein	NA	C8CH04	Staphylococcus_phage	100.0	1.1e-35
WP_000195837.1|406520_406709_+	DUF1381 domain-containing protein	NA	Q4ZCG4	Staphylococcus_virus	100.0	1.6e-26
WP_001125015.1|406683_406884_+	hypothetical protein	NA	A0A2I6PF22	Staphylococcus_phage	100.0	1.8e-28
WP_000237866.1|406886_407039_+	transcriptional activator RinB	NA	A0A2I6PF16	Staphylococcus_phage	98.0	5.8e-19
WP_000265258.1|407106_407307_+	DUF1514 family protein	NA	A0A2I6PF41	Staphylococcus_phage	100.0	2.9e-26
WP_114621437.1|407358_409806_+	virulence-associated E family protein	NA	Q4ZCG0	Staphylococcus_virus	99.3	0.0e+00
WP_001801650.1|409914_410013_-	hypothetical protein	NA	A0A2I6PDP6	Staphylococcus_phage	100.0	3.7e-11
WP_001794602.1|410146_410437_+	VRR-NUC domain-containing protein	NA	M1T308	Staphylococcus_phage	100.0	4.9e-51
WP_074370994.1|410417_411785_+	DEAD/DEAH box helicase	NA	A0A2I6PE95	Staphylococcus_phage	99.8	3.9e-263
WP_015986202.1|411797_412235_+	hypothetical protein	NA	A7TWI7	Staphylococcus_phage	100.0	6.1e-77
WP_015986203.1|412391_412706_+	HNH endonuclease	NA	A7TWI8	Staphylococcus_phage	100.0	2.5e-56
WP_000778933.1|412816_413122_+|terminase	P27 family phage terminase small subunit	terminase	A0A2I6PEQ6	Staphylococcus_phage	100.0	2.9e-49
WP_000153540.1|413111_414803_+|terminase	terminase large subunit	terminase	A0A1X9IGU0	Staphylococcus_phage	100.0	0.0e+00
WP_001100664.1|414807_416046_+|portal	phage portal protein	portal	A0A2I6PER5	Staphylococcus_phage	100.0	6.9e-235
WP_000061862.1|416029_416803_+|protease	Clp protease ClpP	protease	M1TAZ4	Staphylococcus_phage	98.4	3.0e-135
WP_031775802.1|416814_417978_+|capsid	phage major capsid protein	capsid	A0A2I6PDD7	Staphylococcus_phage	99.2	2.0e-215
WP_000050973.1|418046_418325_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
WP_000395498.1|418336_418669_+	hypothetical protein	NA	A0A2I6PES3	Staphylococcus_phage	100.0	4.1e-57
WP_000110023.1|418665_419067_+	hypothetical protein	NA	A0A2I6PF54	Staphylococcus_phage	100.0	8.1e-68
WP_031863976.1|419067_419463_+	DUF3168 domain-containing protein	NA	R4WAV1	Staphylococcus_phage	98.5	5.7e-66
WP_000807536.1|419497_420139_+|tail	tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	100.0	5.9e-121
WP_031775895.1|420230_420686_+	Ig domain-containing protein	NA	Q9B0D4	Staphylococcus_phage	99.3	1.1e-76
WP_000589165.1|420743_421094_+	hypothetical protein	NA	A0A2I6PDE6	Staphylococcus_phage	100.0	1.1e-55
WP_000438833.1|421135_421294_+	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
WP_114621438.1|421307_427508_+|tail	phage tail tape measure protein	tail	U5U762	Staphylococcus_phage	98.5	0.0e+00
WP_001190533.1|427507_428332_+|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
WP_031797209.1|428340_429924_+|tail	phage tail protein	tail	Q4ZD01	Staphylococcus_virus	99.1	8.7e-307
WP_000179860.1|429923_430214_+	hypothetical protein	NA	A0A2I6PF46	Staphylococcus_phage	100.0	2.1e-49
WP_031795006.1|430229_432140_+	hypothetical protein	NA	A0A2I6PF35	Staphylococcus_phage	99.5	0.0e+00
WP_031775920.1|432139_433606_+|plate	phage baseplate upper protein	plate	M1TB09	Staphylococcus_phage	99.8	1.0e-253
WP_001166599.1|433605_433995_+	DUF2977 domain-containing protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
WP_000916020.1|433987_434152_+	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
WP_000466775.1|434197_434497_+	DUF2951 family protein	NA	M9QRV2	Staphylococcus_phage	98.0	5.9e-31
WP_000339142.1|434632_434935_+|holin	phage holin	holin	A0A2I6PF56	Staphylococcus_phage	99.0	1.2e-47
WP_000930261.1|434946_436401_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A0N6WMR3	Staphylococcus_phage	99.8	2.0e-289
WP_000201920.1|437095_437275_+	hypothetical protein	NA	M9QYR8	Staphylococcus_phage	100.0	4.1e-24
WP_000455172.1|437296_437824_+	DUF4065 domain-containing protein	NA	M9QX37	Staphylococcus_phage	99.4	1.3e-97
WP_043854724.1|437795_438212_+	hypothetical protein	NA	M9QRV7	Staphylococcus_phage	99.3	5.4e-75
446262:446277	attR	TCATTTATTAGAAAAT	NA	NA	NA	NA
>prophage 2
NZ_LT992471	Staphylococcus aureus isolate 17_LA_343 chromosome I	2922778	502331	514176	2922778	integrase	Staphylococcus_phage(33.33%)	14	505353:505373	518858:518878
WP_000264071.1|502331_503798_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	5.2e-96
WP_000424968.1|503822_505364_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	32.6	1.2e-23
505353:505373	attL	GAGTGGGAATAATTATATATA	NA	NA	NA	NA
WP_000592970.1|505457_506594_-|integrase	site-specific integrase	integrase	A0A1S5S7K9	Streptococcus_phage	42.5	1.7e-75
WP_000819103.1|506677_507463_-	helix-turn-helix transcriptional regulator	NA	A0A1S5S8T5	Streptococcus_phage	58.6	1.2e-09
WP_000494396.1|507579_507807_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000080597.1|507852_508113_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000773833.1|508159_508306_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001058503.1|508298_508523_+	hypothetical protein	NA	A0A1W6JPA6	Staphylococcus_phage	61.8	3.0e-16
WP_001103964.1|508523_508823_+	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	76.8	1.1e-37
WP_000985239.1|508913_511277_+	primase	NA	A0A2H4JCU9	uncultured_Caudovirales_phage	39.2	9.7e-137
WP_001081424.1|511698_512043_+	hypothetical protein	NA	A0A1W6JQD5	Staphylococcus_phage	65.2	9.4e-41
WP_000884055.1|512267_512474_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000657541.1|512460_513519_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000253082.1|513684_514176_+	hypothetical protein	NA	A0A2H4JB26	uncultured_Caudovirales_phage	39.2	6.7e-24
518858:518878	attR	GAGTGGGAATAATTATATATA	NA	NA	NA	NA
>prophage 3
NZ_LT992471	Staphylococcus aureus isolate 17_LA_343 chromosome I	2922778	847453	855273	2922778		Hokovirus(16.67%)	10	NA	NA
WP_000244415.1|847453_848509_-	two-component system sensor histidine kinase SaeS	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|848508_849195_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037805.1|849169_849643_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093559.1|849983_850424_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637685.1|850704_851289_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062967.1|851387_852101_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	5.0e-52
WP_000941336.1|852104_852524_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|852525_853194_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604516.1|853544_854138_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	44.0	3.1e-39
WP_001217786.1|854121_855273_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	2.1e-23
>prophage 4
NZ_LT992471	Staphylococcus aureus isolate 17_LA_343 chromosome I	2922778	867243	881559	2922778		uncultured_Caudovirales_phage(50.0%)	13	NA	NA
WP_000663034.1|867243_868302_+	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	26.9	1.5e-20
WP_000197271.1|868460_869003_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_106095050.1|869739_870657_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.4	7.4e-08
WP_014936998.1|870747_870855_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193750.1|870926_872432_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930016.1|872771_873272_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	66.2	2.7e-52
WP_001068490.1|873291_874158_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|874959_875358_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|875320_877426_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|877545_878517_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000876311.1|878886_879858_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	80.2	7.8e-141
WP_001245567.1|879844_880801_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.6e-05
WP_000616865.1|880797_881559_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	30.1	7.2e-17
>prophage 5
NZ_LT992471	Staphylococcus aureus isolate 17_LA_343 chromosome I	2922778	931013	983320	2922778	tail,capsid,terminase,plate,portal,holin,head,integrase	Staphylococcus_phage(78.57%)	74	932329:932347	963226:963244
WP_001121763.1|931013_932318_+	phosphopyruvate hydratase	NA	W6LP63	Streptococcus_phage	80.5	1.5e-195
932329:932347	attL	CATTAAGTACTGCCATAAT	NA	NA	NA	NA
WP_000785252.1|932656_933115_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000556760.1|933181_933415_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_001165970.1|933543_934284_+	carboxylesterase	NA	NA	NA	NA	NA
WP_001050055.1|934317_936690_+	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	38.8	8.7e-93
WP_001085185.1|936711_937176_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	100.0	1.5e-81
WP_021285879.1|937687_938737_-|integrase	site-specific integrase	integrase	M9NTA3	Staphylococcus_phage	100.0	1.3e-197
WP_021285878.1|938798_939314_-	hypothetical protein	NA	M9NS30	Staphylococcus_phage	100.0	1.7e-33
WP_001573838.1|939317_939809_-	hypothetical protein	NA	M9NSS1	Staphylococcus_phage	100.0	5.8e-84
WP_000521395.1|939829_940288_-	hypothetical protein	NA	B2ZYU2	Staphylococcus_phage	100.0	1.2e-83
WP_000455972.1|940309_940636_-	helix-turn-helix transcriptional regulator	NA	A0A059T5A2	Staphylococcus_phage	100.0	7.0e-54
WP_001114715.1|940798_941008_+	helix-turn-helix transcriptional regulator	NA	A0A059T617	Staphylococcus_phage	100.0	4.8e-32
WP_015978381.1|941046_941772_+	phage repressor protein	NA	M9NS32	Staphylococcus_phage	100.0	2.4e-131
WP_000455728.1|941796_942006_+	hypothetical protein	NA	A0A2H4PQR1	Staphylococcus_phage	100.0	9.7e-33
WP_000066011.1|942018_942180_+	DUF1270 domain-containing protein	NA	Q4ZAZ7	Staphylococcus_virus	100.0	2.5e-20
WP_000291075.1|942271_942532_+	DUF1108 family protein	NA	A0A059T5A3	Staphylococcus_phage	100.0	1.2e-43
WP_000802315.1|942539_942776_+	hypothetical protein	NA	D2JGJ9	Staphylococcus_phage	100.0	2.7e-39
WP_000002513.1|942768_943248_+	siphovirus Gp157 family protein	NA	D2JGK0	Staphylococcus_phage	100.0	5.3e-82
WP_021285877.1|943247_943886_+	ERF family protein	NA	M9NSS5	Staphylococcus_phage	100.0	1.7e-115
WP_000934783.1|943885_944314_+	single-stranded DNA-binding protein	NA	A0A2H4JHI1	uncultured_Caudovirales_phage	93.0	1.2e-53
WP_021285876.1|944327_945002_+	DUF968 domain-containing protein	NA	M9NRH9	Staphylococcus_phage	100.0	3.6e-129
WP_001037657.1|944994_945750_+	DnaD domain protein	NA	C8CGZ1	Staphylococcus_phage	100.0	3.8e-143
WP_001132243.1|945749_946106_+	hypothetical protein	NA	M9NS37	Staphylococcus_phage	100.0	8.2e-64
WP_001106166.1|946102_947344_+	AAA family ATPase	NA	M9NSS7	Staphylococcus_phage	100.0	2.6e-229
WP_021285875.1|947340_947556_+	hypothetical protein	NA	A9CR72	Staphylococcus_phage	95.8	5.3e-34
WP_001123688.1|947558_947780_+	DUF3269 family protein	NA	Q9G021	Staphylococcus_phage	100.0	1.3e-35
WP_021285874.1|947789_948197_+	RusA family crossover junction endodeoxyribonuclease	NA	M9NS41	Staphylococcus_phage	100.0	4.5e-74
WP_021285873.1|948196_948382_+	DUF3113 family protein	NA	M9NSS9	Staphylococcus_phage	100.0	2.4e-27
WP_021285872.1|948382_949000_+	hypothetical protein	NA	A0A0H3U4U9	Staphylococcus_phage	99.5	3.6e-83
WP_021285871.1|948999_949254_+	DUF3310 domain-containing protein	NA	M9NRI3	Staphylococcus_phage	100.0	1.3e-42
WP_078069534.1|949253_949502_+	hypothetical protein	NA	M9NTB1	Staphylococcus_phage	100.0	2.3e-41
WP_021285869.1|949516_949723_+	hypothetical protein	NA	M9NS43	Staphylococcus_phage	100.0	5.1e-34
WP_000695770.1|949725_950133_+	hypothetical protein	NA	M9NST1	Staphylococcus_phage	100.0	3.1e-75
WP_000979209.1|950129_950477_+	hypothetical protein	NA	D2JGL4	Staphylococcus_phage	100.0	5.9e-59
WP_031267622.1|950773_951025_+	DUF1024 family protein	NA	M9NRI5	Staphylococcus_phage	100.0	1.1e-38
WP_000028424.1|951014_951188_+	hypothetical protein	NA	A0A2H4PQJ2	Staphylococcus_phage	100.0	1.8e-24
WP_000889684.1|951188_951350_+	hypothetical protein	NA	M9NTB4	Staphylococcus_phage	100.0	4.9e-24
WP_021285914.1|951906_952113_+	DUF1381 domain-containing protein	NA	M9NST3	Staphylococcus_phage	100.0	1.9e-20
WP_000141180.1|952109_952313_+	hypothetical protein	NA	A0A2I6PEQ8	Staphylococcus_phage	100.0	3.4e-30
WP_000608281.1|952305_952542_+	hypothetical protein	NA	A7TWI0	Staphylococcus_phage	98.7	1.4e-35
WP_169538641.1|952531_952921_+	hypothetical protein	NA	M9NTB6	Staphylococcus_phage	100.0	4.7e-65
WP_000595258.1|952917_953091_+	transcriptional activator RinB	NA	A1KX88	Staphylococcus_virus	100.0	3.7e-22
WP_000286968.1|953091_953493_+	hypothetical protein	NA	A0A2H4PQK5	Staphylococcus_phage	100.0	5.6e-69
WP_031838201.1|953840_954221_+	DNA-binding protein	NA	Q4ZAB1	Staphylococcus_virus	99.2	3.0e-64
WP_031838202.1|954204_955470_+|terminase	PBSX family phage terminase large subunit	terminase	Q4ZAI3	Staphylococcus_virus	99.3	3.7e-244
WP_031886702.1|955488_956895_+|portal	phage portal protein	portal	Q4ZAA9	Staphylococcus_virus	98.1	4.9e-269
WP_049949321.1|956833_957814_+|capsid	minor capsid protein	capsid	A0A0E3XC69	Staphylococcus_phage	98.2	4.7e-178
WP_015967248.1|957911_958508_+	phage scaffolding protein	NA	C7F7L8	Staphylococcus_phage	100.0	3.4e-78
WP_031838205.1|958528_959353_+|capsid	N4-gp56 family major capsid protein	capsid	Q9G001	Staphylococcus_virus	99.3	3.6e-147
WP_031838206.1|959369_959696_+	Rho termination factor N-terminal domain-containing protein	NA	Q9G000	Staphylococcus_virus	95.4	5.8e-48
WP_031838207.1|959695_960010_+|head,tail	phage head-tail connector protein	head,tail	A0A2H4PQL2	Staphylococcus_phage	99.0	9.8e-53
WP_031838208.1|960002_960338_+|head	phage head closure protein	head	A0A0H4ISR6	Staphylococcus_phage	99.1	1.1e-59
WP_031838209.1|960324_960738_+	HK97 gp10 family phage protein	NA	A0A0E3XCY8	Staphylococcus_phage	97.8	8.3e-76
WP_031838210.1|960750_961188_+	DUF3168 domain-containing protein	NA	A0A2H4PQL6	Staphylococcus_phage	99.3	4.6e-77
WP_000046067.1|961174_961735_+	hypothetical protein	NA	A0A0H4ITY2	Staphylococcus_phage	100.0	5.9e-101
WP_000141084.1|961796_962291_+	hypothetical protein	NA	A0A0H4IPX9	Staphylococcus_phage	100.0	2.5e-87
WP_049949322.1|962311_962653_+	hypothetical protein	NA	W5R8J4	Staphylococcus_phage	99.1	1.3e-55
WP_031838212.1|962655_965625_+|terminase	terminase	terminase	W5R9L9	Staphylococcus_phage	94.5	1.8e-257
963226:963244	attR	ATTATGGCAGTACTTAATG	NA	NA	NA	NA
WP_031838213.1|965639_966575_+|tail	phage tail family protein	tail	A7YGW1	Staphylococcus_virus	99.7	4.8e-180
WP_031903449.1|966585_968472_+|tail	phage tail protein	tail	W5RAP4	Staphylococcus_phage	99.0	0.0e+00
WP_031838215.1|968484_970383_+	hypothetical protein	NA	W5R996	Staphylococcus_phage	96.7	0.0e+00
WP_031838216.1|970382_972206_+|plate	BppU family phage baseplate upper protein	plate	Q4ZDD5	Staphylococcus_virus	94.1	5.5e-281
WP_031838217.1|972205_972583_+	DUF2977 domain-containing protein	NA	A0A0E3T8J6	Staphylococcus_phage	99.2	1.3e-54
WP_078098837.1|972586_972760_+	XkdX family protein	NA	Q4ZA85	Staphylococcus_virus	98.2	6.6e-27
WP_031903468.1|972798_973233_+	hypothetical protein	NA	A0A1W6JQR9	Staphylococcus_phage	66.0	8.8e-52
WP_031838220.1|973216_973612_+	hypothetical protein	NA	A0A1W6JQP0	Staphylococcus_phage	58.8	4.9e-33
WP_031886698.1|973664_975539_+	glucosaminidase domain-containing protein	NA	Q4ZA83	Staphylococcus_virus	97.3	0.0e+00
WP_114621440.1|975551_978146_+|plate	BppU family phage baseplate upper protein	plate	Q4ZC48	Staphylococcus_virus	56.9	3.9e-272
WP_021285832.1|978201_978639_+|holin	phage holin	holin	M9NRJ9	Staphylococcus_phage	100.0	1.4e-73
WP_021285831.1|978619_980065_+	SH3 domain-containing protein	NA	M9NTD5	Staphylococcus_phage	100.0	9.7e-297
WP_021285829.1|980669_980864_+	hypothetical protein	NA	M9NSU5	Staphylococcus_phage	100.0	4.3e-27
WP_021285828.1|980878_981079_+	hypothetical protein	NA	M9NUJ7	Staphylococcus_phage	100.0	4.6e-32
WP_000280154.1|981615_982161_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000757403.1|982591_983320_-	DUF5067 domain-containing protein	NA	H9A0X8	Staphylococcus_phage	36.8	4.8e-18
>prophage 6
NZ_LT992471	Staphylococcus aureus isolate 17_LA_343 chromosome I	2922778	1064858	1088083	2922778	integrase	Streptococcus_phage(94.74%)	23	1053315:1053332	1092358:1092375
1053315:1053332	attL	GCGGGGCCCCAACACAGA	NA	NA	NA	NA
WP_000154905.1|1064858_1068512_+	helicase-exonuclease AddAB subunit AddA	NA	A7KV33	Bacillus_phage	24.7	7.0e-25
WP_000670757.1|1068677_1069580_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_000902814.1|1069906_1070296_+	YisL family protein	NA	NA	NA	NA	NA
WP_001291561.1|1070560_1071778_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1S5SEW7	Streptococcus_phage	100.0	3.7e-233
WP_000814511.1|1071859_1072063_-	excisionase	NA	A0A1S5SF07	Streptococcus_phage	100.0	4.0e-31
WP_000857133.1|1072523_1072754_-	helix-turn-helix domain-containing protein	NA	A0A1S5SEX1	Streptococcus_phage	100.0	2.7e-36
WP_000804885.1|1072750_1073173_-	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	100.0	2.5e-72
WP_001227347.1|1073677_1074031_+	helix-turn-helix domain-containing protein	NA	A0A1S5SFA6	Streptococcus_phage	100.0	1.3e-58
WP_000336323.1|1074090_1074258_-	cysteine-rich KTR domain-containing protein	NA	D0R0F6	Streptococcus_phage	68.0	1.6e-14
WP_000691736.1|1074376_1076296_-	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A1S5SF82	Streptococcus_phage	99.5	0.0e+00
WP_001814923.1|1076311_1076428_-	tetracycline resistance determinant leader peptide	NA	NA	NA	NA	NA
WP_001224318.1|1076672_1077605_-	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	99.4	3.1e-171
WP_000769868.1|1077601_1078603_-	lysozyme family protein	NA	A0A1S5SEZ8	Streptococcus_phage	100.0	5.0e-191
WP_000804748.1|1078599_1080777_-	membrane protein	NA	A0A1S5SF30	Streptococcus_phage	100.0	0.0e+00
WP_000331163.1|1080779_1083227_-	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	99.9	0.0e+00
WP_000506270.1|1083210_1083717_-	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	100.0	8.6e-91
WP_000342539.1|1083691_1084189_-	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	100.0	1.7e-91
WP_001009056.1|1084305_1084527_-	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	100.0	4.3e-31
WP_000398286.1|1084569_1085775_-	replication initiation factor domain-containing protein	NA	A0A1S5SEX3	Streptococcus_phage	99.8	1.1e-232
WP_000879507.1|1085797_1085950_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000813488.1|1085952_1087338_-	DNA translocase FtsK	NA	A0A1S5SFB5	Streptococcus_phage	100.0	1.1e-265
WP_000985015.1|1087366_1087753_-	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	100.0	3.0e-64
WP_000420682.1|1087768_1088083_-	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	100.0	5.2e-54
1092358:1092375	attR	TCTGTGTTGGGGCCCCGC	NA	NA	NA	NA
>prophage 7
NZ_LT992471	Staphylococcus aureus isolate 17_LA_343 chromosome I	2922778	1115007	1167021	2922778	protease,tRNA,holin,bacteriocin	Streptococcus_phage(40.0%)	52	NA	NA
WP_000448934.1|1115007_1115997_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000258003.1|1116291_1116687_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
WP_001217731.1|1117057_1117777_+	adaptor protein MecA	NA	NA	NA	NA	NA
WP_000959279.1|1117897_1118884_+	competence protein CoiA	NA	NA	NA	NA	NA
WP_000082727.1|1118931_1120740_+	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.4	1.2e-46
WP_000896695.1|1121199_1122006_-	DsbA family protein	NA	NA	NA	NA	NA
WP_000214070.1|1122028_1122394_-	truncated hemoglobin	NA	NA	NA	NA	NA
WP_000224612.1|1122497_1123091_-	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_001242104.1|1123276_1123624_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001077683.1|1123640_1124276_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
WP_001270834.1|1124292_1125102_+	NAD kinase	NA	NA	NA	NA	NA
WP_000669942.1|1125098_1125953_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000062407.1|1125973_1127359_+	magnesium transporter	NA	NA	NA	NA	NA
WP_000395153.1|1127368_1129213_+	monovalent cation:proton antiporter family protein	NA	NA	NA	NA	NA
WP_000933200.1|1129490_1130261_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_000933105.1|1130457_1131543_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000570705.1|1131884_1133453_+	alanine:cation symporter family protein	NA	NA	NA	NA	NA
WP_000889181.1|1133594_1134353_+	esterase family protein	NA	NA	NA	NA	NA
WP_000600387.1|1134546_1135056_+	2'-5' RNA ligase family protein	NA	NA	NA	NA	NA
WP_001154224.1|1135168_1136359_-	MFS transporter	NA	NA	NA	NA	NA
WP_000258650.1|1136336_1137512_-	diglucosyl diacylglycerol synthase	NA	NA	NA	NA	NA
WP_000340124.1|1137942_1139427_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
WP_072434963.1|1139407_1139668_+	YueH family protein	NA	NA	NA	NA	NA
WP_001049947.1|1139667_1141230_+	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.0	3.8e-36
WP_000928413.1|1141531_1142335_+	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_014937014.1|1142553_1144878_+|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.1e-11
WP_000021872.1|1144894_1146253_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000414168.1|1146391_1147903_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000287260.1|1148391_1148961_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000876826.1|1149170_1149389_+	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000668814.1|1149469_1150456_-	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000214898.1|1150654_1150831_+	YkvS family protein	NA	NA	NA	NA	NA
WP_001033867.1|1150845_1151448_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_099119695.1|1151747_1151825_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
WP_000790905.1|1152459_1152744_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_000870811.1|1152787_1154752_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_000668623.1|1154754_1155075_+	YxeA family protein	NA	NA	NA	NA	NA
WP_000571192.1|1155071_1155713_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	1.0e-19
WP_001796515.1|1155800_1156091_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157958947.1|1156180_1156369_+	poly(glycerol-phosphate) alpha-glucosyltransferase	NA	NA	NA	NA	NA
WP_000766009.1|1156457_1156814_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001081332.1|1157304_1158264_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001794249.1|1158312_1158444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000867362.1|1158507_1158723_-	TM2 domain-containing protein	NA	NA	NA	NA	NA
WP_000620945.1|1158887_1159439_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000070966.1|1159489_1160428_-	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
WP_000190616.1|1160609_1161971_+	isochorismate synthase MenF	NA	NA	NA	NA	NA
WP_000526673.1|1161957_1163631_+	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA	NA
WP_000150215.1|1163617_1164421_+	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA	NA
WP_000184947.1|1164413_1165235_+	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA	NA
WP_000284455.1|1165472_1165802_-	staphostatin B	NA	NA	NA	NA	NA
WP_001088778.1|1165839_1167021_-|protease	cysteine protease staphopain B	protease	NA	NA	NA	NA
>prophage 8
NZ_LT992471	Staphylococcus aureus isolate 17_LA_343 chromosome I	2922778	1188136	1196609	2922778		Synechococcus_phage(33.33%)	9	NA	NA
WP_001807816.1|1188136_1188619_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_001010409.1|1188605_1189730_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174055.1|1189733_1190438_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	2.1e-47
WP_000848351.1|1190437_1190701_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666799.1|1190702_1191374_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032750.1|1191366_1193556_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.4	1.3e-140
WP_000483707.1|1193534_1195019_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	8.5e-46
WP_000030815.1|1195011_1196040_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.1	2.9e-61
WP_000238668.1|1196042_1196609_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	2.7e-29
>prophage 9
NZ_LT992471	Staphylococcus aureus isolate 17_LA_343 chromosome I	2922778	1452944	1458127	2922778		Staphylococcus_phage(66.67%)	9	NA	NA
WP_001807853.1|1452944_1453142_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	50.0	9.9e-11
WP_074347689.1|1453828_1454056_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	72.1	1.9e-18
WP_001002341.1|1454351_1454558_+	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	55.2	5.5e-12
WP_001788716.1|1455258_1455369_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000006110.1|1455761_1455947_+	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	78.7	2.4e-19
WP_000477490.1|1456457_1456874_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033855983.1|1456997_1457261_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000974166.1|1457305_1457890_-	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	42.6	4.4e-30
WP_001215406.1|1457953_1458127_-	hypothetical protein	NA	A0A059NT83	Lactococcus_phage	51.9	3.6e-09
>prophage 10
NZ_LT992471	Staphylococcus aureus isolate 17_LA_343 chromosome I	2922778	1741474	1749786	2922778	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|1741474_1742260_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924214.1|1742385_1743276_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001062170.1|1743285_1744632_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	33.7	3.4e-54
WP_000683941.1|1744745_1745846_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	1.0e-08
WP_000624563.1|1745848_1746526_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1746656_1747763_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217255.1|1747986_1749786_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.5e-54
>prophage 11
NZ_LT992471	Staphylococcus aureus isolate 17_LA_343 chromosome I	2922778	1956027	2037297	2922778	transposase,protease,tRNA	Staphylococcus_phage(86.36%)	76	NA	NA
WP_031775852.1|1956027_1962576_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	95.0	4.9e-295
WP_000836471.1|1962896_1963208_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	95.1	1.3e-49
WP_001807819.1|1963229_1965647_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.1	0.0e+00
WP_001025064.1|1965934_1967116_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	9.6e-218
WP_000526541.1|1967225_1968179_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	99.3	6.4e-79
WP_000764426.1|1968175_1968739_+	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	95.7	7.3e-99
WP_000757543.1|1968857_1969259_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|1969831_1970659_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_014937042.1|1970661_1970781_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196354.1|1970892_1971894_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_001008555.1|1972021_1972480_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	97.4	4.1e-68
WP_001159034.1|1972492_1973674_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	1.9e-226
WP_000493892.1|1973684_1974317_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
WP_000077346.1|1974323_1975367_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.1	3.1e-196
WP_001261672.1|1975847_1977350_-	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	5.0e-30
WP_000221190.1|1978000_1978315_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	1.3e-52
WP_000989103.1|1978314_1979607_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	94.7	7.5e-216
WP_001032832.1|1979693_1980548_-	glucosaminidase domain-containing protein	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1980823_1981048_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671058.1|1981246_1981717_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	84.6	5.0e-69
WP_001153741.1|1981829_1982273_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030474.1|1982259_1982703_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	77.9	1.4e-49
WP_001168915.1|1983000_1983636_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000492903.1|1983802_1984423_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001096494.1|1984985_1985699_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091443.1|1985957_1986260_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200546.1|1986514_1986880_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	98.3	6.9e-58
WP_000623484.1|1986876_1987230_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	82.1	2.3e-18
WP_000453302.1|1987479_1988313_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	98.9	1.7e-157
WP_000366160.1|1988524_1989433_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.3	1.3e-137
WP_000933822.1|1989557_1990751_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000109913.1|1991122_1992715_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.6	0.0e+00
WP_016187361.1|1993011_1993758_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.0	7.8e-141
WP_000672013.1|1993762_1994236_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	7.2e-84
WP_000718107.1|1994301_1994559_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778553.1|1994555_1995557_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	86.5	3.3e-163
WP_000348381.1|1995561_1997040_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	95.5	6.7e-277
WP_016187363.1|1997198_1997654_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	96.6	8.3e-77
WP_001825423.1|1997956_1998619_+	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	87.7	2.8e-49
WP_000070644.1|1998699_1999695_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	94.8	1.3e-69
WP_000669036.1|1999770_2000397_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	84.1	9.9e-81
WP_000627549.1|2000437_2000782_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	96.5	5.1e-55
WP_000414230.1|2000879_2001452_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	93.1	3.5e-24
WP_000864133.1|2001649_2002207_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	98.1	1.1e-78
WP_000375476.1|2002577_2002754_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000070813.1|2002764_2003148_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000196442.1|2003596_2003878_-|transposase	IS3 family transposase	transposase	A0A0C5AJ30	Paenibacillus_phage	63.4	3.2e-23
WP_000731425.1|2004120_2004564_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000747800.1|2004563_2005007_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000221417.1|2005541_2007965_+	polysaccharide lyase 8 family protein	NA	NA	NA	NA	NA
WP_001034579.1|2008090_2008468_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000439997.1|2008676_2009120_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000877848.1|2009162_2009468_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014532497.1|2009537_2009927_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001095317.1|2009906_2010674_-	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	44.6	6.3e-53
WP_001215401.1|2010685_2011921_-|transposase	IS21 family transposase	transposase	A0A059NT83	Lactococcus_phage	49.4	7.4e-104
WP_000195429.1|2013500_2014673_-|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_000825946.1|2014831_2015296_+	hypothetical protein	NA	A0EWV3	Staphylococcus_phage	92.2	4.0e-26
WP_000132890.1|2017621_2018176_-	serine hydrolase family protein	NA	NA	NA	NA	NA
WP_000167534.1|2018495_2019896_-	protoporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_000162876.1|2019919_2020843_-	ferrochelatase	NA	NA	NA	NA	NA
WP_000233540.1|2020899_2021937_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_000737983.1|2022198_2022702_+	signal transduction protein TRAP	NA	NA	NA	NA	NA
WP_001245751.1|2022825_2024049_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000216874.1|2024041_2024782_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.8	1.2e-24
WP_000004984.1|2024915_2025338_+	HIT family protein	NA	NA	NA	NA	NA
WP_000648118.1|2025479_2025845_+	YtxH domain-containing protein	NA	NA	NA	NA	NA
WP_000477959.1|2026576_2027134_+	DUF3267 domain-containing protein	NA	NA	NA	NA	NA
WP_000782119.1|2027338_2028301_+	foldase	NA	NA	NA	NA	NA
WP_001244175.1|2028421_2029363_-	3'-5' exoribonuclease YhaM	NA	NA	NA	NA	NA
WP_000584628.1|2029359_2032296_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_000238216.1|2032285_2033482_-	exonuclease SbcCD subunit D	NA	NA	NA	NA	NA
WP_002869660.1|2033778_2033877_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000290301.1|2034414_2034759_-	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	29.7	7.5e-06
WP_000992534.1|2034827_2035952_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_000195429.1|2036124_2037297_+|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
>prophage 12
NZ_LT992471	Staphylococcus aureus isolate 17_LA_343 chromosome I	2922778	2091240	2198245	2922778	tail,capsid,terminase,integrase,portal,transposase,head,holin,protease,tRNA	Staphylococcus_phage(83.95%)	122	2123633:2123649	2196229:2196246
WP_000195429.1|2091240_2092413_-|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_000140179.1|2092562_2093633_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_000548781.1|2093879_2094410_-	DUF3267 domain-containing protein	NA	NA	NA	NA	NA
WP_001147871.1|2094579_2095941_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A1X9I6F4	Streptococcus_phage	43.8	1.1e-103
WP_001231457.1|2096021_2096969_-	diacylglycerol kinase	NA	A0A1V0SBJ0	Catovirus	27.8	1.5e-16
WP_001791535.1|2097495_2097642_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000545368.1|2097680_2099108_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	tRNA	NA	NA	NA	NA
WP_000027924.1|2099120_2100578_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
WP_000170162.1|2100579_2100882_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_000957030.1|2101248_2102787_+	sodium/proline symporter PutP	NA	NA	NA	NA	NA
WP_000831695.1|2102875_2104075_-	CamS family sex pheromone protein	NA	NA	NA	NA	NA
WP_000774571.1|2104087_2106091_-	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	36.1	4.4e-114
WP_000992924.1|2106094_2108287_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
WP_000272065.1|2108283_2108976_-	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
WP_001165363.1|2109147_2109450_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000572878.1|2109558_2110854_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
WP_000827738.1|2111702_2112869_+|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
WP_000434536.1|2112899_2113223_+	staphostatin A	NA	NA	NA	NA	NA
WP_000669861.1|2113515_2113689_-	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000011542.1|2113669_2114272_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000040870.1|2114541_2115363_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	53.1	6.1e-70
WP_000284428.1|2115355_2116825_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	44.9	1.7e-107
WP_000897642.1|2117008_2118085_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_001177819.1|2118104_2118899_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_001802312.1|2118970_2119078_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000323172.1|2119088_2120651_-	SLC13 family permease	NA	NA	NA	NA	NA
WP_000275718.1|2120855_2121953_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	3.3e-47
WP_000149686.1|2122324_2122885_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_001140871.1|2122937_2123867_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
2123633:2123649	attL	AGATTTAGAAAAAGAAA	NA	NA	NA	NA
WP_078100196.1|2124059_2124233_-	hypothetical protein	NA	NA	NA	NA	NA
2123633:2123649	attL	AGATTTAGAAAAAGAAA	NA	NA	NA	NA
WP_106095101.1|2124284_2125664_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000181321.1|2125783_2126812_-	lactonase family protein	NA	NA	NA	NA	NA
WP_001284658.1|2127271_2127652_-	penicillinase repressor BlaI	NA	NA	NA	NA	NA
WP_001096367.1|2127641_2129399_-	beta-lactam sensor/signal transducer BlaR1	NA	NA	NA	NA	NA
WP_000733622.1|2129505_2130351_+	penicillin-hydrolyzing class A beta-lactamase BlaZ	NA	A0A1B0VBP7	Salmonella_phage	33.9	4.4e-31
WP_000612779.1|2130664_2131075_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	53.5	3.1e-30
WP_000195429.1|2131467_2132640_+|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_001028144.1|2132769_2134209_-	aminoglycoside O-phosphotransferase APH(2'')-Ia	NA	A0A1X9I6C2	Streptococcus_phage	100.0	3.8e-285
WP_000393259.1|2134209_2134602_-	GNAT family N-acetyltransferase	NA	A0A0N7GFH7	Staphylococcus_phage	100.0	6.9e-72
WP_000195429.1|2134658_2135831_-|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_000410574.1|2137066_2137432_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_000026850.1|2137440_2139504_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_031775878.1|2139506_2140619_-|integrase	tyrosine-type recombinase/integrase	integrase	P97010	Streptococcus_pyogenes_phage	31.6	1.7e-11
WP_000267034.1|2141164_2141338_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001188070.1|2141788_2142829_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000713062.1|2142885_2143728_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001033968.1|2143724_2144282_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000966291.1|2144341_2144866_-	membrane protein	NA	NA	NA	NA	NA
WP_000182842.1|2144986_2145550_+	thioredoxin family protein	NA	NA	NA	NA	NA
2145442:2145458	attR	AGATTTAGAAAAAGAAA	NA	NA	NA	NA
WP_001221650.1|2145613_2146354_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
2145442:2145458	attR	AGATTTAGAAAAAGAAA	NA	NA	NA	NA
WP_000763048.1|2146353_2147226_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
WP_000645735.1|2147222_2147903_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000991294.1|2147903_2148800_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.7	6.5e-17
WP_000691584.1|2148796_2149177_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000681966.1|2149434_2149611_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000990056.1|2149852_2149951_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001068535.1|2150150_2151437_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_000669725.1|2151707_2153777_-	extracellular adherence protein Eap/Map	NA	NA	NA	NA	NA
WP_000669789.1|2154734_2154914_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_001791826.1|2155224_2155485_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000702263.1|2155537_2155888_-	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_000919350.1|2156546_2157038_-	staphylokinase	NA	A0A1X9H028	Staphylococcus_phage	100.0	9.5e-87
WP_064131634.1|2157228_2157984_-	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	99.6	5.8e-152
WP_000611512.1|2157995_2158250_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_001791821.1|2158301_2158409_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011447039.1|2158461_2158638_-|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_000539688.1|2158787_2159084_-	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
WP_001040261.1|2159141_2159429_-	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
WP_001153681.1|2159475_2159628_-	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_000567408.1|2163417_2164902_-|tail	phage tail family protein	tail	A0A2I6PDJ0	Staphylococcus_phage	100.0	1.2e-297
WP_001796452.1|2164898_2169428_-|tail	phage tail tape measure protein	tail	A0A2I6PDK2	Staphylococcus_phage	99.8	0.0e+00
WP_001549167.1|2169484_2169622_-	hypothetical protein	NA	A0A2I6PDX7	Staphylococcus_phage	100.0	3.4e-18
WP_001096355.1|2169672_2170023_-	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
WP_071621395.1|2170072_2170297_-	Ig-like domain-containing protein	NA	A0A075LYE8	Staphylococcus_phage	100.0	3.0e-32
WP_000268733.1|2170338_2170983_-|tail	phage tail protein	tail	A0A1X9H0J2	Staphylococcus_phage	100.0	1.5e-119
WP_000565498.1|2170983_2171391_-	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
WP_000114227.1|2171387_2171792_-	HK97 gp10 family phage protein	NA	G4KNQ5	Staphylococcus_phage	99.3	2.1e-68
WP_000755150.1|2171788_2172151_-|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
WP_000150936.1|2172134_2172419_-|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000238236.1|2172408_2172693_-	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
WP_000154559.1|2172712_2173858_-|capsid	phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	100.0	9.6e-215
WP_000642728.1|2173881_2174619_-|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
WP_000025274.1|2174602_2175790_-|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
WP_000625088.1|2175805_2177467_-|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
WP_000402904.1|2177463_2177808_-	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_000988336.1|2177938_2178238_-	HNH endonuclease	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
WP_000590122.1|2178469_2178886_-	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_001622114.1|2178913_2179114_-	DUF1514 family protein	NA	A0A2I6PDV9	Staphylococcus_phage	98.5	4.0e-28
WP_000595265.1|2179113_2179263_-	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_000592207.1|2179259_2179646_-	hypothetical protein	NA	W5R986	Staphylococcus_phage	100.0	3.0e-64
WP_000195803.1|2179642_2179849_-	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	100.0	1.3e-29
WP_001282074.1|2179845_2180091_-	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	100.0	5.0e-36
WP_106095071.1|2180674_2180911_-	DUF1024 family protein	NA	G4KNP4	Staphylococcus_phage	98.7	1.4e-35
WP_000131370.1|2180925_2181168_-	hypothetical protein	NA	Q4ZDP7	Staphylococcus_virus	95.0	2.1e-39
WP_000101288.1|2181171_2181540_-	hypothetical protein	NA	A0A0H3U2T3	Staphylococcus_phage	100.0	2.0e-49
WP_000401960.1|2181552_2181957_-	RusA family crossover junction endodeoxyribonuclease	NA	A0EWX6	Staphylococcus_phage	100.0	1.9e-72
WP_000338530.1|2181965_2182184_-	hypothetical protein	NA	A0A2I6PDG4	Staphylococcus_phage	100.0	1.0e-37
WP_000148321.1|2182190_2183084_-	DnaD domain-containing protein	NA	A0A2I6PDG7	Staphylococcus_phage	99.3	5.5e-141
WP_000610648.1|2183113_2183584_-	single-stranded DNA-binding protein	NA	A0EWX3	Staphylococcus_phage	98.7	1.3e-80
WP_073394849.1|2183584_2184202_-	MBL fold metallo-hydrolase	NA	A0A2I6PDI9	Staphylococcus_phage	100.0	9.1e-87
WP_000138475.1|2184282_2185203_-	recombinase RecT	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
WP_000700555.1|2185204_2187148_-	AAA family ATPase	NA	S4V9K6	Staphylococcus_phage	100.0	0.0e+00
WP_001205732.1|2187156_2187420_-	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000291510.1|2187428_2187689_-	DUF1108 family protein	NA	A0A1P8L6F5	Staphylococcus_phage	100.0	5.2e-44
WP_000165371.1|2187693_2187996_-	DUF2482 family protein	NA	A0A1P8L6F8	Staphylococcus_phage	100.0	7.0e-48
WP_000048129.1|2188090_2188252_-	DUF1270 family protein	NA	A0A1P8L6G0	Staphylococcus_phage	100.0	1.9e-20
WP_001120201.1|2188248_2188572_-	DUF771 domain-containing protein	NA	A0A075LYF5	Staphylococcus_phage	100.0	3.0e-57
WP_000762519.1|2188626_2189007_+	DUF2513 domain-containing protein	NA	Q9T1Z5	Staphylococcus_phage	99.2	3.4e-68
WP_001148862.1|2188993_2189191_-	hypothetical protein	NA	O80075	Staphylococcus_phage	87.7	3.5e-24
WP_001148605.1|2189206_2189959_-	phage antirepressor KilAC domain-containing protein	NA	M9NTH5	Staphylococcus_phage	100.0	1.1e-139
WP_000128907.1|2190009_2190339_+	hypothetical protein	NA	M9NS98	Staphylococcus_phage	100.0	2.7e-53
WP_001025404.1|2190327_2190543_-	DUF2829 domain-containing protein	NA	A0A0H3U4C7	Staphylococcus_phage	100.0	4.8e-35
WP_000854073.1|2190558_2190822_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PF09	Staphylococcus_phage	98.9	2.1e-40
WP_001801500.1|2190818_2190992_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001031454.1|2190954_2191668_+	helix-turn-helix transcriptional regulator	NA	M9NUL0	Staphylococcus_phage	100.0	1.2e-130
WP_000759682.1|2191683_2192616_+	ATP-dependent helicase	NA	A0A2I6PEZ7	Staphylococcus_phage	100.0	5.7e-173
WP_000591749.1|2192621_2192963_+	hypothetical protein	NA	A0A2I6PF04	Staphylococcus_phage	100.0	4.6e-56
WP_000705248.1|2193166_2193349_+	hypothetical protein	NA	M9NSW6	Staphylococcus_phage	100.0	4.1e-27
WP_000825947.1|2193448_2193913_+	hypothetical protein	NA	A0EWV3	Staphylococcus_phage	100.0	1.1e-28
WP_000857191.1|2193971_2195009_+|integrase	site-specific integrase	integrase	A0EWV2	Staphylococcus_phage	100.0	9.1e-180
WP_000595612.1|2196151_2197168_-	leukocidin/hemolysin toxin family protein	NA	A0A2I6PER8	Staphylococcus_phage	29.3	1.1e-25
WP_000791397.1|2197189_2198245_-	leukocidin/hemolysin toxin family protein	NA	A0A2I6PER8	Staphylococcus_phage	35.4	8.7e-37
