The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LT992490	Vibrio cholerae strain 4295STDY6534200 chromosome 1	3029538	694364	700970	3029538		Staphylococcus_phage(66.67%)	7	NA	NA
WP_000210574.1|694364_695498_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.4	1.1e-64
WP_000366562.1|695509_696760_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	49.5	5.0e-100
WP_000543544.1|696859_697309_+	transcriptional regulator NrdR	NA	NA	NA	NA	NA
WP_029627451.1|697334_698438_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.1	3.5e-44
WP_000493874.1|698442_699096_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	38.2	1.2e-31
WP_001122865.1|699136_700246_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	39.8	6.7e-64
WP_000864130.1|700499_700970_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	48.7	6.8e-34
>prophage 2
NZ_LT992490	Vibrio cholerae strain 4295STDY6534200 chromosome 1	3029538	2017461	2088098	3029538	tRNA,transposase,integrase	uncultured_Caudovirales_phage(20.0%)	51	2025123:2025150	2083556:2083583
WP_029628384.1|2017461_2018361_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_032480817.1|2018703_2020827_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	35.6	1.6e-13
WP_032480818.1|2021022_2023992_+	EAL domain-containing protein	NA	G3MA91	Bacillus_virus	33.5	8.8e-18
WP_000266180.1|2024029_2024230_-	hypothetical protein	NA	NA	NA	NA	NA
2025123:2025150	attL	GTGAGCTTACGAGAAGATAGTGTACATA	NA	NA	NA	NA
WP_000359330.1|2025252_2026152_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_000097694.1|2026191_2027355_-	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase	NA	NA	NA	NA	NA
WP_000038553.1|2027608_2029033_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_000066204.1|2029100_2030204_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	44.1	1.5e-47
WP_029628382.1|2030200_2030665_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_001001302.1|2030734_2031610_+	CNNM family magnesium/cobalt transport protein CorC	NA	NA	NA	NA	NA
WP_029628381.1|2031650_2033168_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_001125919.1|2033223_2033694_-	zinc ribbon-containing protein	NA	NA	NA	NA	NA
WP_001157862.1|2033823_2036400_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	43.3	3.8e-187
WP_001246438.1|2036576_2037191_+	luciferase	NA	NA	NA	NA	NA
WP_001223847.1|2037196_2038225_+	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
WP_001161139.1|2038293_2038611_+	ribosome silencing factor	NA	NA	NA	NA	NA
WP_000701620.1|2038613_2039084_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_000945981.1|2039090_2040995_+	penicillin-binding protein 2	NA	NA	NA	NA	NA
WP_000781446.1|2040991_2042113_+	peptidoglycan glycosyltransferase MrdB	NA	NA	NA	NA	NA
WP_001080122.1|2042112_2042904_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	57.1	5.5e-20
WP_000748297.1|2042995_2044171_+	serine hydrolase	NA	B6DZZ7	Stx2-converting_phage	47.7	1.3e-89
WP_000932180.1|2044318_2044597_+	YbeD family protein	NA	NA	NA	NA	NA
WP_000431347.1|2044784_2045435_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_000042593.1|2045427_2046393_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_001015525.1|2046588_2046915_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000919130.1|2047077_2048328_-	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	50.5	1.4e-97
WP_000410937.1|2048668_2049265_+	YitT family protein	NA	NA	NA	NA	NA
WP_001187398.1|2049414_2049849_-	VanZ family protein	NA	NA	NA	NA	NA
WP_000990927.1|2049827_2050535_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000147057.1|2050531_2052745_-	polysaccharide biosynthesis tyrosine autokinase	NA	NA	NA	NA	NA
WP_002021173.1|2052769_2053294_-	polysaccharide export protein	NA	NA	NA	NA	NA
WP_119565014.1|2053449_2054775_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_174566534.1|2054767_2056504_+	hypothetical protein	NA	NA	NA	NA	NA
WP_119565122.1|2056500_2058561_+	hypothetical protein	NA	A0A2H4J185	uncultured_Caudovirales_phage	25.1	2.6e-13
WP_119565121.1|2058563_2059022_+	hypothetical protein	NA	NA	NA	NA	NA
WP_119565087.1|2063141_2063996_+	co-chaperone YbbN	NA	NA	NA	NA	NA
WP_174566535.1|2064056_2067821_-	BCSC C-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_005382071.1|2067811_2068918_-	cellulase	NA	NA	NA	NA	NA
WP_119565089.1|2068917_2071203_-	cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB	NA	NA	NA	NA	NA
WP_119565090.1|2071192_2073826_-	UDP-forming cellulose synthase catalytic subunit	NA	NA	NA	NA	NA
WP_119565091.1|2073829_2074609_-	cellulose synthase operon protein YhjQ	NA	NA	NA	NA	NA
WP_119565092.1|2074605_2074803_-	hypothetical protein	NA	NA	NA	NA	NA
WP_118119227.1|2076181_2077765_+	cellulose biosynthesis protein BcsE	NA	NA	NA	NA	NA
WP_020840228.1|2077761_2077938_+	hypothetical protein	NA	NA	NA	NA	NA
WP_174566536.1|2077937_2079563_+	cellulose biosynthesis protein BcsG	NA	NA	NA	NA	NA
WP_100269006.1|2079648_2080771_+|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	31.8	1.9e-26
WP_020433901.1|2081099_2081474_+	hypothetical protein	NA	NA	NA	NA	NA
WP_119565093.1|2081470_2081797_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_119565094.1|2081912_2083511_+|transposase	IS66 family transposase	transposase	NA	NA	NA	NA
WP_119565095.1|2086363_2086669_-	hypothetical protein	NA	NA	NA	NA	NA
2083556:2083583	attR	TATGTACACTATCTTCTCGTAAGCTCAC	NA	NA	NA	NA
WP_100269006.1|2086974_2088098_-|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	31.8	1.9e-26
>prophage 3
NZ_LT992490	Vibrio cholerae strain 4295STDY6534200 chromosome 1	3029538	2258866	2266059	3029538		Anguillid_herpesvirus(16.67%)	9	NA	NA
WP_001162850.1|2258866_2259295_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	38.4	1.0e-20
WP_002031209.1|2259498_2260788_-	aminopeptidase PepB	NA	Q6GYZ8	Mycoplasma_phage	34.0	6.5e-34
WP_000872176.1|2261007_2261202_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_001124189.1|2261250_2261589_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_029628558.1|2261602_2263453_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	41.2	4.1e-106
WP_029628557.1|2263476_2263992_-	co-chaperone HscB	NA	NA	NA	NA	NA
WP_000301573.1|2264040_2264364_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	50.5	3.0e-25
WP_000331703.1|2264424_2264808_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	78.2	5.4e-53
WP_000775253.1|2264844_2266059_-	IscS subfamily cysteine desulfurase	NA	A0A0H3TPH2	Faustovirus	30.5	1.1e-32
>prophage 4
NZ_LT992490	Vibrio cholerae strain 4295STDY6534200 chromosome 1	3029538	2582692	2589917	3029538		uncultured_Mediterranean_phage(33.33%)	6	NA	NA
WP_002031018.1|2582692_2583580_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	40.8	9.2e-56
WP_002031016.1|2583847_2586436_+	DNA mismatch repair protein MutS	NA	A0A1V0SC35	Catovirus	23.0	2.9e-33
WP_000116733.1|2586529_2587537_-	RNA polymerase sigma factor RpoS	NA	F4YCU2	Synechococcus_phage	34.2	7.8e-35
WP_000177566.1|2587610_2588546_-	peptidoglycan DD-metalloendopeptidase family protein	NA	D7RWE0	Brochothrix_phage	34.7	7.8e-05
WP_000002982.1|2588545_2589172_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	52.1	2.0e-36
WP_000698379.1|2589164_2589917_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	53.3	8.0e-69
>prophage 1
NZ_LT992491	Vibrio cholerae strain 4295STDY6534200 chromosome 2	1093987	713069	743069	1093987	transposase,tRNA,integrase	Bacillus_phage(28.57%)	25	726975:727034	743278:745043
WP_029628002.1|713069_714092_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_029628001.1|714614_714989_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_029628000.1|715292_715700_+	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1B1ITQ0	uncultured_Mediterranean_phage	46.6	3.0e-22
WP_000019966.1|716531_716804_-	Ni(II)/Co(II)-binding transcriptional repressor RcnR	NA	NA	NA	NA	NA
WP_029627999.1|716937_718014_+	nickel/cobalt efflux protein RcnA	NA	NA	NA	NA	NA
WP_000118579.1|718258_719281_+	DUF4118 domain-containing protein	NA	W8CYF6	Bacillus_phage	22.9	7.4e-09
WP_001106951.1|719283_719982_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	32.6	5.1e-25
WP_029627998.1|719974_721435_+	potassium transporter	NA	NA	NA	NA	NA
WP_000929987.1|721448_722102_+	TrkA family potassium uptake protein	NA	NA	NA	NA	NA
WP_000250979.1|722103_723468_+	Ktr system potassium transporter B	NA	NA	NA	NA	NA
WP_029627997.1|723810_724407_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A141E172	Streptococcus_phage	31.5	2.3e-10
WP_108315934.1|724498_725678_+|transposase	IS3 family transposase	transposase	Q716C2	Shigella_phage	65.4	2.9e-113
WP_029627991.1|725776_726817_+|transposase	IS481 family transposase	transposase	A0A077SLK2	Escherichia_phage	80.9	1.0e-167
726975:727034	attL	ATCCGTCATTCCGCAGCTAATTCCAGAATTTAAATAGTGTGATCTGGCGATCAGCTTTTC	NA	NA	NA	NA
WP_011787758.1|727107_728718_+|transposase	IS1634-like element ISSpu7 family transposase	transposase	NA	NA	NA	NA
WP_011787758.1|728877_730488_+|transposase	IS1634-like element ISSpu7 family transposase	transposase	NA	NA	NA	NA
WP_084998363.1|730682_734201_-	DNA helicase	NA	NA	NA	NA	NA
WP_000009527.1|734924_735245_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_029627615.1|735348_735885_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029627614.1|735890_737267_+	DEAD/DEAH box helicase family protein	NA	I4AZM6	Saccharomonospora_phage	30.7	1.8e-34
WP_029627613.1|737683_738136_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029627612.1|738254_739550_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029627611.1|739543_740506_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029627610.1|740508_740745_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029627609.1|740741_742298_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029627608.1|742337_743069_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
743278:745043	attR	ATCCGTCATTCCGCAGCTAATTCCAGAATTTAAATAGTGTGATCTGGCGATCAGCTTTTCATAAAAACTACGACACCATCTTGACCGCGATCGACAGTTTTGATCTATTACTGCTATTTGACGGTCTCAAAATATGTCTACCCATCCTGTTATTAAACGCTTAGATCACCTTGGTCTCATTGCCGCCTTTTGTCACGAAATTGGCCTGCCACGGATGATAGATGCCGTTATCCCAAAATATTCTGACCACAATGTTTCTCATGGTGACGCGGTATTGGCCATGCTCCTAAATGGACTTGGCTTTCATAGCAGAACACTGCACATGTTCTCGGACTTTTTTAAGACCAAGCCTGTATCTAAGCTACTCGCCAAAGACATTGAAGCACACCACCTGACTGATGATGTACTAGGCCGCACATTAGATGCTCTATACGAAGCCGATGTCTCAGCGCTCTATCAGGTTATTGCTGAGCGTGTTGTTGATAAACTGGGCTTGACGACCGATTCTGTTCATCTTGATATCACTAGCTTCCACGTTGATGGTGAGTATGCACAAGATGAAAACACCAACGTGATTAAGCTTGTAAGAGGTTATAGTCGGGATCATAGGCCAGAGCTTAACCAAGTCGTGCTTGAACTCATCTGTGAAAACCAAGCAGGTATTCCTGTTTACATGCAAGCACTGAGTGGTAACACCAATGATGCCAAGGCATTCGCTGAAGTCACTAAAAGACACATACATTGCCTAAAAGCCGCGCAAAATAGTCGTTACTTTATCGCTGATGCCGCTTTGTACACCGAAGAAAGCATCTCCTCGCTAGATGAGCAAAATCAAAAATTCATTACCCGTGTCCCCATGACCATCAAGCTCGCAAAACAAGCACTACTTGCGCTAGAGCCAGAGCAATTAAGCACTATCGGTCATGGCTACTCAGGATGTTGGATAGACTCGGATTACGGAAAGGTCAATCAACGTTGGTTGCTCGTTCACAGTGAACAGGCCACCAAGCGGGAAGAAATCACTTTCTTCAAGAACTTAGAGAAAAACATAGCAAAAGAAATCAAAGCGTTGGAAAAGCTAAGTAAAAAACCATTCGCTTGTGAAGTTGACGCAGAATTAGCGTTTAACGATTTCAAGAAACAATGTGACTTACTTGGGTTTGAACAAGGCACTCTCATCAAACAGCCGACTTACTCTCATTCGGGCCGCCCAAAGACAGATGAAGCACCGACAGGATACCAATACTTTATCGAAGCCGCCCCCTTCACCGACCTAGAAAAAGTAAAACTGGCTAAGCTCAAAGTAGGCATGTTTATCCTCGCGACGAATGACACCGACAATGAAGCACTCACCATGGCGGCTCTTCTAGCACATTACAAATCGCAACAAAAAGTCGAGCGCGGCTTCCGTTTTCTAAAAAGCCCTGAGTTTTTAACCTCTTCCATCTTCTTGAAAAAGCCTGAGCGCATTGAAGCGTTGCTAATGATAATGACGTTGAGCTTGCTTGTTTACGCTAGTTTAGAACACAAAATCAGAGAACAACTCGCACAAACCGAAGCGTTCTTCCCAAGTATGGTAAAGAACAAGACGACCTCCAGACCGACGGCACGTTGGGTCTTCTTGCAATTCGAAGGCATAGATACGCTAGAGATTAACGGCCAAAGGTTCATCACTGGACTTCAAGATCACCAAACACAACTACTCAAATTACTCGGTAGATTCTATGAGGTAGTTTATTCCTAAATTAGCTGCGGAATGTCGGTTT	NA	NA	NA	NA
