assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900327245.1_Gillia	NZ_LS398551	Orientia tsutsugamushi str. Gilliam chromosome I	1	269875-269964	1	CRISPRCasFinder	no		RT,DEDDh	Orphan	TGAAGGCAGAGCTGAAGGCAGGGCTGAAGG	30	1	10	269905-269934|269905-269934|269905-269934|269905-269934|269905-269934|269905-269934|269905-269934|269905-269934|269905-269934|269905-269934	NZ_LS398551.1_303976-303947|NZ_LS398551.1_793215-793186|NZ_LS398551.1_969373-969344|NZ_LS398551.1_1096867-1096838|NZ_LS398551.1_1580380-1580409|NZ_LS398551.1_1810686-1810657|NZ_LS398551.1_1844935-1844964|NZ_LS398551.1_303928-303899|NZ_LS398551.1_1096819-1096790|NZ_LS398551.1_1810638-1810609	NA	1	1	Orphan	RT,DEDDh	NA|94aa|up_6|NZ_LS398551.1_257079_257361_+,NA|100aa|down_6|NZ_LS398551.1_282316_282616_-,NA|112aa|down_8|NZ_LS398551.1_284427_284763_+,NA|159aa|down_9|NZ_LS398551.1_285311_285788_+	NA|90aa|up_9|NZ_LS398551.1_252064_252334_-	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|303aa|up_8|NZ_LS398551.1_252357_253266_-	PRK01528, truB, tRNA pseudouridine synthase B; Provisional	NA|147aa|up_7|NZ_LS398551.1_254510_254951_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|94aa|up_6|NZ_LS398551.1_257079_257361_+	NA	NA|270aa|up_5|NZ_LS398551.1_257364_258174_-	TIGR00571, DNA_adenine_methylase, DNA adenine methylase (dam)	NA|286aa|up_4|NZ_LS398551.1_259288_260146_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|192aa|up_3|NZ_LS398551.1_260246_260822_+	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|353aa|up_2|NZ_LS398551.1_260942_262001_+	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase	NA|152aa|up_1|NZ_LS398551.1_262068_262524_-	pfam06412, TraD, Conjugal transfer protein TraD	NA|368aa|up_0|NZ_LS398551.1_267967_269071_+	TIGR02760, conjugative_transfer_relaxase_protein_TraI, conjugative transfer relaxase protein TraI	NA|585aa|down_0|NZ_LS398551.1_270115_271870_-	pfam10412, TrwB_AAD_bind, Type IV secretion-system coupling protein DNA-binding domain	NA|382aa|down_1|NZ_LS398551.1_271873_273019_-	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|233aa|down_2|NZ_LS398551.1_276462_277161_-	pfam13728, TraF, F plasmid transfer operon protein	NA|289aa|down_3|NZ_LS398551.1_278294_279162_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|128aa|down_4|NZ_LS398551.1_279814_280198_-	pfam09673, TrbC_Ftype, Type-F conjugative transfer system pilin assembly protein	NA|301aa|down_5|NZ_LS398551.1_280220_281123_-	pfam06834, TraU, TraU protein	NA|100aa|down_6|NZ_LS398551.1_282316_282616_-	NA	NA|428aa|down_7|NZ_LS398551.1_283052_284336_+	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain	NA|112aa|down_8|NZ_LS398551.1_284427_284763_+	NA	NA|159aa|down_9|NZ_LS398551.1_285311_285788_+	NA
GCF_900327245.1_Gillia	NZ_LS398551	Orientia tsutsugamushi str. Gilliam chromosome I	2	819123-819212	2	CRISPRCasFinder	no		RT,DEDDh	Orphan	TGAAGGCAGAGCTGAAGGCAGGGCTGAAGG	30	1	10	819153-819182|819153-819182|819153-819182|819153-819182|819153-819182|819153-819182|819153-819182|819153-819182|819153-819182|819153-819182	NZ_LS398551.1_303976-303947|NZ_LS398551.1_793215-793186|NZ_LS398551.1_969373-969344|NZ_LS398551.1_1096867-1096838|NZ_LS398551.1_1580380-1580409|NZ_LS398551.1_1810686-1810657|NZ_LS398551.1_1844935-1844964|NZ_LS398551.1_303928-303899|NZ_LS398551.1_1096819-1096790|NZ_LS398551.1_1810638-1810609	NA	1	1	Orphan	RT,DEDDh	NA|88aa|up_5|NZ_LS398551.1_807621_807885_-,NA|110aa|down_6|NZ_LS398551.1_829278_829608_-,NA|109aa|down_7|NZ_LS398551.1_830971_831298_-,NA|159aa|down_8|NZ_LS398551.1_831441_831918_-,NA|112aa|down_9|NZ_LS398551.1_832481_832817_-	NA|152aa|up_9|NZ_LS398551.1_800822_801278_-	pfam13612, DDE_Tnp_1_3, Transposase DDE domain	NA|243aa|up_8|NZ_LS398551.1_803222_803951_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|286aa|up_7|NZ_LS398551.1_803972_804830_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|192aa|up_6|NZ_LS398551.1_804930_805506_+	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|88aa|up_5|NZ_LS398551.1_807621_807885_-	NA	NA|245aa|up_4|NZ_LS398551.1_809224_809959_+	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|352aa|up_3|NZ_LS398551.1_810415_811471_-	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|148aa|up_2|NZ_LS398551.1_811806_812250_-	pfam06412, TraD, Conjugal transfer protein TraD	NA|946aa|up_1|NZ_LS398551.1_812546_815384_+	TIGR02768, conjugal_transfer_protein_TraA, Ti-type conjugative transfer relaxase TraA	NA|368aa|up_0|NZ_LS398551.1_817215_818319_+	TIGR02760, conjugative_transfer_relaxase_protein_TraI, conjugative transfer relaxase protein TraI	NA|585aa|down_0|NZ_LS398551.1_819363_821118_-	pfam10412, TrwB_AAD_bind, Type IV secretion-system coupling protein DNA-binding domain	NA|381aa|down_1|NZ_LS398551.1_821121_822264_-	sd00006, TPR, Tetratricopeptide repeat	NA|747aa|down_2|NZ_LS398551.1_822279_824520_-	pfam07916, TraG_N, TraG-like protein, N-terminal region	NA|233aa|down_3|NZ_LS398551.1_825707_826406_-	pfam13728, TraF, F plasmid transfer operon protein	NA|128aa|down_4|NZ_LS398551.1_826776_827160_-	pfam09673, TrbC_Ftype, Type-F conjugative transfer system pilin assembly protein	NA|301aa|down_5|NZ_LS398551.1_827182_828085_-	pfam06834, TraU, TraU protein	NA|110aa|down_6|NZ_LS398551.1_829278_829608_-	NA	NA|109aa|down_7|NZ_LS398551.1_830971_831298_-	NA	NA|159aa|down_8|NZ_LS398551.1_831441_831918_-	NA	NA|112aa|down_9|NZ_LS398551.1_832481_832817_-	NA
GCF_900327245.1_Gillia	NZ_LS398551	Orientia tsutsugamushi str. Gilliam chromosome I	3	1699729-1699902	1	CRT	no		RT,DEDDh	Orphan	AGGCATAGCTAAAGGNAT	18	4	190	1699747-1699764|1699747-1699764|1699747-1699764|1699747-1699764|1699747-1699764|1699747-1699764|1699747-1699764|1699747-1699764|1699747-1699764|1699747-1699764|1699747-1699764|1699747-1699764|1699747-1699764|1699747-1699764|1699747-1699764|1699747-1699764|1699747-1699764|1699747-1699764|1699747-1699764|1699783-1699800|1699783-1699800|1699783-1699800|1699783-1699800|1699783-1699800|1699783-1699800|1699783-1699800|1699783-1699800|1699783-1699800|1699783-1699800|1699783-1699800|1699819-1699848|1699819-1699848|1699819-1699848|1699819-1699848|1699819-1699848|1699819-1699848|1699819-1699848|1699819-1699848|1699819-1699848|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884|1699867-1699884	NZ_LS398551.1_401532-401515|NZ_LS398551.1_461386-461403|NZ_LS398551.1_755614-755597|NZ_LS398551.1_1381138-1381121|NZ_LS398551.1_1443843-1443826|NZ_LS398551.1_1699711-1699728|NZ_LS398551.1_1920157-1920140|NZ_LS398551.1_2219003-2219020|NZ_LS398551.1_2219039-2219056|NZ_LS398551.1_2372222-2372239|NZ_LS398551.1_2372258-2372275|NZ_LS398551.1_140753-140736|NZ_LS398551.1_607471-607488|NZ_LS398551.1_718247-718264|NZ_LS398551.1_1194139-1194156|NZ_LS398551.1_1194175-1194192|NZ_LS398551.1_1240670-1240653|NZ_LS398551.1_1240706-1240689|NZ_LS398551.1_2295790-2295807|NZ_LS398551.1_303913-303896|NZ_LS398551.1_303961-303944|NZ_LS398551.1_793200-793183|NZ_LS398551.1_969358-969341|NZ_LS398551.1_1096804-1096787|NZ_LS398551.1_1096852-1096835|NZ_LS398551.1_1580395-1580412|NZ_LS398551.1_1810623-1810606|NZ_LS398551.1_1810671-1810654|NZ_LS398551.1_1844950-1844967|NZ_LS398551.1_1920229-1920212|NZ_LS398551.1_2372246-2372275|NZ_LS398551.1_401544-401515|NZ_LS398551.1_461374-461403|NZ_LS398551.1_755626-755597|NZ_LS398551.1_1381150-1381121|NZ_LS398551.1_1443855-1443826|NZ_LS398551.1_1920169-1920140|NZ_LS398551.1_2218991-2219020|NZ_LS398551.1_2219027-2219056|NZ_LS398551.1_140609-140592|NZ_LS398551.1_140645-140628|NZ_LS398551.1_140657-140640|NZ_LS398551.1_140669-140652|NZ_LS398551.1_140705-140688|NZ_LS398551.1_140717-140700|NZ_LS398551.1_218341-218358|NZ_LS398551.1_269956-269973|NZ_LS398551.1_269968-269985|NZ_LS398551.1_303889-303872|NZ_LS398551.1_303937-303920|NZ_LS398551.1_330207-330190|NZ_LS398551.1_368559-368576|NZ_LS398551.1_401472-401455|NZ_LS398551.1_401484-401467|NZ_LS398551.1_461410-461427|NZ_LS398551.1_461422-461439|NZ_LS398551.1_607495-607512|NZ_LS398551.1_755590-755573|NZ_LS398551.1_755638-755621|NZ_LS398551.1_793164-793147|NZ_LS398551.1_793176-793159|NZ_LS398551.1_819204-819221|NZ_LS398551.1_819216-819233|NZ_LS398551.1_969322-969305|NZ_LS398551.1_969334-969317|NZ_LS398551.1_1096708-1096691|NZ_LS398551.1_1096720-1096703|NZ_LS398551.1_1096732-1096715|NZ_LS398551.1_1096744-1096727|NZ_LS398551.1_1096828-1096811|NZ_LS398551.1_1194199-1194216|NZ_LS398551.1_1228986-1229003|NZ_LS398551.1_1240646-1240629|NZ_LS398551.1_1381102-1381085|NZ_LS398551.1_1381114-1381097|NZ_LS398551.1_1443807-1443790|NZ_LS398551.1_1528470-1528453|NZ_LS398551.1_1810599-1810582|NZ_LS398551.1_1810647-1810630|NZ_LS398551.1_1844974-1844991|NZ_LS398551.1_1920109-1920092|NZ_LS398551.1_1920121-1920104|NZ_LS398551.1_1920133-1920116|NZ_LS398551.1_1920181-1920164|NZ_LS398551.1_1920193-1920176|NZ_LS398551.1_2219063-2219080|NZ_LS398551.1_2295814-2295831|NZ_LS398551.1_2372306-2372323|NZ_LS398551.1_140621-140604|NZ_LS398551.1_140681-140664|NZ_LS398551.1_140729-140712|NZ_LS398551.1_303985-303968|NZ_LS398551.1_368547-368564|NZ_LS398551.1_401496-401479|NZ_LS398551.1_486640-486623|NZ_LS398551.1_718271-718288|NZ_LS398551.1_755650-755633|NZ_LS398551.1_793224-793207|NZ_LS398551.1_969382-969365|NZ_LS398551.1_1096756-1096739|NZ_LS398551.1_1096768-1096751|NZ_LS398551.1_1096780-1096763|NZ_LS398551.1_1228974-1228991|NZ_LS398551.1_1381162-1381145|NZ_LS398551.1_1443819-1443802|NZ_LS398551.1_1443867-1443850|NZ_LS398551.1_1580419-1580436|NZ_LS398551.1_1699891-1699908|NZ_LS398551.1_1699903-1699920|NZ_LS398551.1_1810695-1810678|NZ_LS398551.1_1837302-1837319|NZ_LS398551.1_1844926-1844943|NZ_LS398551.1_1844986-1845003|NZ_LS398551.1_1920205-1920188|NZ_LS398551.1_2218979-2218996|NZ_LS398551.1_2372282-2372299|NZ_LS398551.1_2372294-2372311|NZ_LS398551.1_31291-31274|NZ_LS398551.1_63565-63548|NZ_LS398551.1_63613-63596|NZ_LS398551.1_148305-148288|NZ_LS398551.1_148317-148300|NZ_LS398551.1_148329-148312|NZ_LS398551.1_148341-148324|NZ_LS398551.1_148389-148372|NZ_LS398551.1_148437-148420|NZ_LS398551.1_148485-148468|NZ_LS398551.1_164340-164323|NZ_LS398551.1_164352-164335|NZ_LS398551.1_164364-164347|NZ_LS398551.1_164376-164359|NZ_LS398551.1_164388-164371|NZ_LS398551.1_311425-311408|NZ_LS398551.1_311497-311480|NZ_LS398551.1_339915-339898|NZ_LS398551.1_339963-339946|NZ_LS398551.1_339975-339958|NZ_LS398551.1_339987-339970|NZ_LS398551.1_360999-361016|NZ_LS398551.1_361011-361028|NZ_LS398551.1_368523-368540|NZ_LS398551.1_486652-486635|NZ_LS398551.1_718283-718300|NZ_LS398551.1_726030-726013|NZ_LS398551.1_765118-765101|NZ_LS398551.1_765130-765113|NZ_LS398551.1_765190-765173|NZ_LS398551.1_765202-765185|NZ_LS398551.1_765214-765197|NZ_LS398551.1_799958-799941|NZ_LS398551.1_807347-807364|NZ_LS398551.1_807419-807436|NZ_LS398551.1_985062-985045|NZ_LS398551.1_985110-985093|NZ_LS398551.1_985158-985141|NZ_LS398551.1_985170-985153|NZ_LS398551.1_1106792-1106775|NZ_LS398551.1_1106804-1106787|NZ_LS398551.1_1106816-1106799|NZ_LS398551.1_1106864-1106847|NZ_LS398551.1_1106876-1106859|NZ_LS398551.1_1106924-1106907|NZ_LS398551.1_1106936-1106919|NZ_LS398551.1_1218732-1218749|NZ_LS398551.1_1218780-1218797|NZ_LS398551.1_1218852-1218869|NZ_LS398551.1_1218864-1218881|NZ_LS398551.1_1369238-1369221|NZ_LS398551.1_1443891-1443874|NZ_LS398551.1_1454311-1454294|NZ_LS398551.1_1454359-1454342|NZ_LS398551.1_1454371-1454354|NZ_LS398551.1_1454383-1454366|NZ_LS398551.1_1545407-1545390|NZ_LS398551.1_1545419-1545402|NZ_LS398551.1_1692092-1692109|NZ_LS398551.1_1692164-1692181|NZ_LS398551.1_1837290-1837307|NZ_LS398551.1_1881123-1881106|NZ_LS398551.1_1881135-1881118|NZ_LS398551.1_1930527-1930510|NZ_LS398551.1_1930539-1930522|NZ_LS398551.1_1930587-1930570|NZ_LS398551.1_1930599-1930582|NZ_LS398551.1_1930659-1930642|NZ_LS398551.1_2123211-2123194|NZ_LS398551.1_2123223-2123206|NZ_LS398551.1_2286505-2286522|NZ_LS398551.1_2286517-2286534|NZ_LS398551.1_2395680-2395697	NA	4	4	Orphan	RT,DEDDh	NA|183aa|up_8|NZ_LS398551.1_1685263_1685812_+,NA|176aa|up_6|NZ_LS398551.1_1687106_1687634_+,NA|47aa|up_5|NZ_LS398551.1_1688455_1688596_+,NA|58aa|down_9|NZ_LS398551.1_1713035_1713209_-	NA|215aa|up_9|NZ_LS398551.1_1684571_1685216_+	sd00045, ANK, ankyrin repeats	NA|183aa|up_8|NZ_LS398551.1_1685263_1685812_+	NA	NA|271aa|up_7|NZ_LS398551.1_1685815_1686628_-	TIGR00571, DNA_adenine_methylase, DNA adenine methylase (dam)	NA|176aa|up_6|NZ_LS398551.1_1687106_1687634_+	NA	NA|47aa|up_5|NZ_LS398551.1_1688455_1688596_+	NA	NA|192aa|up_4|NZ_LS398551.1_1690652_1691228_+	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|329aa|up_3|NZ_LS398551.1_1691348_1692335_+	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase	NA|152aa|up_2|NZ_LS398551.1_1692402_1692858_-	pfam06412, TraD, Conjugal transfer protein TraD	NA|934aa|up_1|NZ_LS398551.1_1693152_1695954_+	TIGR02768, conjugal_transfer_protein_TraA, Ti-type conjugative transfer relaxase TraA	NA|365aa|up_0|NZ_LS398551.1_1697791_1698886_+	TIGR02760, conjugative_transfer_relaxase_protein_TraI, conjugative transfer relaxase protein TraI	NA|585aa|down_0|NZ_LS398551.1_1700050_1701805_-	pfam10412, TrwB_AAD_bind, Type IV secretion-system coupling protein DNA-binding domain	NA|380aa|down_1|NZ_LS398551.1_1701810_1702950_-	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|434aa|down_2|NZ_LS398551.1_1705614_1706916_-	pfam06122, TraH, Conjugative relaxosome accessory transposon protein	NA|239aa|down_3|NZ_LS398551.1_1706912_1707629_-	pfam13728, TraF, F plasmid transfer operon protein	NA|187aa|down_4|NZ_LS398551.1_1707640_1708201_-	COG3600, GepA, Uncharacterized phage-associated protein [Function unknown]	NA|468aa|down_5|NZ_LS398551.1_1708311_1709715_-	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|563aa|down_6|NZ_LS398551.1_1709966_1711655_-	pfam06986, TraN, Type-1V conjugative transfer system mating pair stabilisation	NA|128aa|down_7|NZ_LS398551.1_1711651_1712035_-	pfam09673, TrbC_Ftype, Type-F conjugative transfer system pilin assembly protein	NA|326aa|down_8|NZ_LS398551.1_1712057_1713035_-	pfam06834, TraU, TraU protein	NA|58aa|down_9|NZ_LS398551.1_1713035_1713209_-	NA
