assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900327255.1_UT76	NZ_LS398552	Orientia tsutsugamushi isolate UT76 chromosome I	1	124490-124578	1	CRISPRCasFinder	no		RT,DEDDh	Orphan	AAGTTAAATCTAATCTAGAAACTGAGTTAAAA	32	0	0	NA	NA	NA	1	1	Orphan	RT,DEDDh	NA|98aa|up_6|NZ_LS398552.1_107643_107937_-,NA|1508aa|up_2|NZ_LS398552.1_112995_117519_+,NA|572aa|down_4|NZ_LS398552.1_135335_137051_+,NA|168aa|down_9|NZ_LS398552.1_143806_144310_+	NA|190aa|up_9|NZ_LS398552.1_104174_104744_-	PRK00529, PRK00529, elongation factor P; Validated	NA|418aa|up_8|NZ_LS398552.1_104949_106203_+	PRK05342, clpX, ATP-dependent Clp protease ATP-binding subunit ClpX	NA|434aa|up_7|NZ_LS398552.1_106328_107630_-	PRK12325, PRK12325, prolyl-tRNA synthetase; Provisional	NA|98aa|up_6|NZ_LS398552.1_107643_107937_-	NA	NA|407aa|up_5|NZ_LS398552.1_107950_109171_-	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|339aa|up_4|NZ_LS398552.1_109251_110268_-	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|818aa|up_3|NZ_LS398552.1_110542_112996_+	TIGR00929, CAG_pathogenicity_island_protein_23, type IV secretion/conjugal transfer ATPase, VirB4 family	NA|1508aa|up_2|NZ_LS398552.1_112995_117519_+	NA	NA|579aa|up_1|NZ_LS398552.1_119938_121675_-	TIGR02204, system_ATPase_and_permease_component, ABC transporter, permease/ATP-binding protein	NA|111aa|up_0|NZ_LS398552.1_121658_121991_-	pfam01491, Frataxin_Cyay, Frataxin-like domain	NA|117aa|down_0|NZ_LS398552.1_129199_129550_+	cd03499, SQR_TypeC_SdhC, Succinate:quinone oxidoreductase (SQR) Type C subfamily, Succinate dehydrogenase C (SdhC) subunit; composed of bacterial SdhC and eukaryotic large cytochrome b binding (CybL) proteins	NA|130aa|down_1|NZ_LS398552.1_129566_129956_+	cd03495, SQR_TypeC_SdhD_like, Succinate:quinone oxidoreductase (SQR) Type C subfamily, Succinate dehydrogenase D (SdhD) subunit-like; composed of predominantly uncharacterized bacterial proteins with similarity to the E	NA|597aa|down_2|NZ_LS398552.1_130147_131938_+	PRK09078, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed	NA|262aa|down_3|NZ_LS398552.1_131972_132758_+	PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed	NA|572aa|down_4|NZ_LS398552.1_135335_137051_+	NA	NA|490aa|down_5|NZ_LS398552.1_137059_138529_+	PRK09165, PRK09165, replicative DNA helicase; Provisional	NA|587aa|down_6|NZ_LS398552.1_138625_140386_-	smart00952, RAP, This domain is found in various eukaryotic species, particularly in apicomplexans	NA|192aa|down_7|NZ_LS398552.1_142454_143030_+	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|215aa|down_8|NZ_LS398552.1_143064_143709_+	sd00045, ANK, ankyrin repeats	NA|168aa|down_9|NZ_LS398552.1_143806_144310_+	NA
GCF_900327255.1_UT76	NZ_LS398552	Orientia tsutsugamushi isolate UT76 chromosome I	2	216324-216461	1	CRT	no		RT,DEDDh	Orphan	TAAAGCTGAAGGTAAAGC	18	2	48	216342-216359|216342-216359|216342-216359|216342-216359|216342-216359|216342-216359|216342-216359|216342-216359|216342-216359|216342-216359|216342-216359|216342-216359|216342-216359|216342-216359|216342-216359|216342-216359|216342-216359|216342-216359|216342-216359|216342-216359|216342-216359|216342-216359|216342-216359|216342-216359|216342-216359|216342-216359|216342-216359|216342-216359|216342-216359|216342-216359|216342-216359|216342-216359|216342-216359|216342-216359|216342-216359|216342-216359|216342-216359|216342-216359|216342-216359|216342-216359|216342-216359|216342-216359|216342-216359|216342-216359|216342-216359|216342-216359|216342-216359|216426-216443	NZ_LS398552.1_171923-171940|NZ_LS398552.1_286907-286924|NZ_LS398552.1_573761-573744|NZ_LS398552.1_573821-573804|NZ_LS398552.1_639038-639021|NZ_LS398552.1_1720633-1720650|NZ_LS398552.1_1986562-1986579|NZ_LS398552.1_150433-150450|NZ_LS398552.1_150445-150462|NZ_LS398552.1_150493-150510|NZ_LS398552.1_150505-150522|NZ_LS398552.1_150517-150534|NZ_LS398552.1_171815-171832|NZ_LS398552.1_171863-171880|NZ_LS398552.1_171875-171892|NZ_LS398552.1_270763-270746|NZ_LS398552.1_270775-270758|NZ_LS398552.1_270787-270770|NZ_LS398552.1_270799-270782|NZ_LS398552.1_270811-270794|NZ_LS398552.1_270859-270842|NZ_LS398552.1_270907-270890|NZ_LS398552.1_270955-270938|NZ_LS398552.1_286847-286864|NZ_LS398552.1_286895-286912|NZ_LS398552.1_573833-573816|NZ_LS398552.1_573845-573828|NZ_LS398552.1_573857-573840|NZ_LS398552.1_639050-639033|NZ_LS398552.1_639062-639045|NZ_LS398552.1_1240992-1240975|NZ_LS398552.1_1241004-1240987|NZ_LS398552.1_1241016-1240999|NZ_LS398552.1_1241028-1241011|NZ_LS398552.1_1372750-1372733|NZ_LS398552.1_1720585-1720602|NZ_LS398552.1_1831780-1831797|NZ_LS398552.1_1831792-1831809|NZ_LS398552.1_1872281-1872264|NZ_LS398552.1_1872293-1872276|NZ_LS398552.1_1872305-1872288|NZ_LS398552.1_1872317-1872300|NZ_LS398552.1_1872365-1872348|NZ_LS398552.1_1872377-1872360|NZ_LS398552.1_1986454-1986471|NZ_LS398552.1_1986502-1986519|NZ_LS398552.1_1986514-1986531|NZ_LS398552.1_639026-639009	NA	3	3	Orphan	RT,DEDDh	NA|168aa|up_7|NZ_LS398552.1_209623_210127_+,NA|93aa|up_5|NZ_LS398552.1_211306_211585_+,NA	NA|192aa|up_9|NZ_LS398552.1_208321_208897_+	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|215aa|up_8|NZ_LS398552.1_208931_209576_+	sd00045, ANK, ankyrin repeats	NA|168aa|up_7|NZ_LS398552.1_209623_210127_+	NA	NA|270aa|up_6|NZ_LS398552.1_210130_210940_-	TIGR00571, DNA_adenine_methylase, DNA adenine methylase (dam)	NA|93aa|up_5|NZ_LS398552.1_211306_211585_+	NA	NA|234aa|up_4|NZ_LS398552.1_211649_212351_+	pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	NA|159aa|up_3|NZ_LS398552.1_212804_213281_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|155aa|up_2|NZ_LS398552.1_213768_214233_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|165aa|up_1|NZ_LS398552.1_214251_214746_+	smart00387, HATPase_c, Histidine kinase-like ATPases	NA|196aa|up_0|NZ_LS398552.1_214787_215375_+	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|152aa|down_0|NZ_LS398552.1_216649_217105_-	pfam06412, TraD, Conjugal transfer protein TraD	NA|934aa|down_1|NZ_LS398552.1_217400_220202_+	TIGR02768, conjugal_transfer_protein_TraA, Ti-type conjugative transfer relaxase TraA	NA|365aa|down_2|NZ_LS398552.1_222042_223137_+	TIGR02760, conjugative_transfer_relaxase_protein_TraI, conjugative transfer relaxase protein TraI	NA|137aa|down_3|NZ_LS398552.1_223737_224148_+	TIGR01784, Uncharacterized_protein_pSLT051, conserved hypothetical protein (putative transposase or invertase)	NA|585aa|down_4|NZ_LS398552.1_224157_225912_-	pfam10412, TrwB_AAD_bind, Type IV secretion-system coupling protein DNA-binding domain	NA|382aa|down_5|NZ_LS398552.1_225917_227063_-	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|884aa|down_6|NZ_LS398552.1_227085_229737_-	pfam07916, TraG_N, TraG-like protein, N-terminal region	NA|434aa|down_7|NZ_LS398552.1_229736_231038_-	pfam06122, TraH, Conjugative relaxosome accessory transposon protein	NA|233aa|down_8|NZ_LS398552.1_231034_231733_-	pfam13728, TraF, F plasmid transfer operon protein	NA|564aa|down_9|NZ_LS398552.1_231729_233421_-	pfam06986, TraN, Type-1V conjugative transfer system mating pair stabilisation
GCF_900327255.1_UT76	NZ_LS398552	Orientia tsutsugamushi isolate UT76 chromosome I	3	603535-603646	2	CRISPRCasFinder	no		RT,DEDDh	Orphan	CCTTTAGCCTCACCGAGCTTTATGCCTT	28	1	6	603563-603618|603563-603618|603563-603618|603563-603618|603563-603618|603563-603618	NZ_LS398552.1_1240955-1241010|NZ_LS398552.1_171912-171857|NZ_LS398552.1_270726-270781|NZ_LS398552.1_1872244-1872299|NZ_LS398552.1_1986551-1986496|NZ_LS398552.1_573772-573827	NA	1	1	Orphan	RT,DEDDh	NA|192aa|up_1|NZ_LS398552.1_601365_601941_+,NA|167aa|up_0|NZ_LS398552.1_602622_603123_-,NA|239aa|down_3|NZ_LS398552.1_607172_607889_-,NA|176aa|down_4|NZ_LS398552.1_608744_609272_-,NA|184aa|down_6|NZ_LS398552.1_610566_611118_-	NA|434aa|up_9|NZ_LS398552.1_586979_588281_+	pfam06122, TraH, Conjugative relaxosome accessory transposon protein	NA|880aa|up_8|NZ_LS398552.1_588280_590920_+	pfam07916, TraG_N, TraG-like protein, N-terminal region	NA|380aa|up_7|NZ_LS398552.1_590928_592068_+	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|585aa|up_6|NZ_LS398552.1_592073_593828_+	pfam10412, TrwB_AAD_bind, Type IV secretion-system coupling protein DNA-binding domain	NA|304aa|up_5|NZ_LS398552.1_593837_594749_-	pfam04754, Transposase_31, Putative transposase, YhgA-like	NA|365aa|up_4|NZ_LS398552.1_594800_595895_-	pfam13362, Toprim_3, Toprim domain	NA|933aa|up_3|NZ_LS398552.1_597727_600526_-	TIGR02768, conjugal_transfer_protein_TraA, Ti-type conjugative transfer relaxase TraA	NA|152aa|up_2|NZ_LS398552.1_600821_601277_+	pfam06412, TraD, Conjugal transfer protein TraD	NA|192aa|up_1|NZ_LS398552.1_601365_601941_+	NA	NA|167aa|up_0|NZ_LS398552.1_602622_603123_-	NA	NA|192aa|down_0|NZ_LS398552.1_604539_605115_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|286aa|down_1|NZ_LS398552.1_605215_606073_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|243aa|down_2|NZ_LS398552.1_606094_606823_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|239aa|down_3|NZ_LS398552.1_607172_607889_-	NA	NA|176aa|down_4|NZ_LS398552.1_608744_609272_-	NA	NA|271aa|down_5|NZ_LS398552.1_609750_610563_+	TIGR00571, DNA_adenine_methylase, DNA adenine methylase (dam)	NA|184aa|down_6|NZ_LS398552.1_610566_611118_-	NA	NA|192aa|down_7|NZ_LS398552.1_611844_612420_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|483aa|down_8|NZ_LS398552.1_612655_614104_-	PRK09165, PRK09165, replicative DNA helicase; Provisional	NA|61aa|down_9|NZ_LS398552.1_616035_616218_-	cd16430, TraB, TraB is a homolog of VirB10 which forms part of core complex in Type IV secretion system (T4SS)
