The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LS398550	Orientia tsutsugamushi isolate Kato chromosome I	2319449	66055	148701	2319449	integrase,transposase	Pseudomonas_phage(20.0%)	51	93258:93281	149231:149254
WP_109455604.1|66055_67195_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A0U4JNS1	Bacillus_phage	27.6	1.2e-18
WP_109455605.1|67565_68132_-	hypothetical protein	NA	NA	NA	NA	NA
WP_045918714.1|68715_69594_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	E9P639	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	58.1	2.5e-85
WP_045916144.1|71661_72270_-	major outer membrane protein TSA22	NA	NA	NA	NA	NA
WP_045916145.1|72445_73249_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_045916146.1|73340_74768_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.5	3.7e-38
WP_045916147.1|75083_76445_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_045916148.1|76620_77544_+	AEC family transporter	NA	NA	NA	NA	NA
WP_045916149.1|77673_78636_+	thioredoxin-disulfide reductase	NA	A0A2K9L162	Tupanvirus	41.1	2.6e-56
WP_045916150.1|78656_80168_-	deoxyribodipyrimidine photo-lyase	NA	A0A2H4UV63	Bodo_saltans_virus	30.2	3.4e-50
WP_109455606.1|81088_82228_-	reverse transcriptase	NA	NA	NA	NA	NA
WP_109455607.1|84493_84835_-	hypothetical protein	NA	NA	NA	NA	NA
WP_045916210.1|85818_86616_-	hypothetical protein	NA	NA	NA	NA	NA
WP_109455608.1|88352_89492_+	reverse transcriptase	NA	NA	NA	NA	NA
93258:93281	attL	AGAACCTTATTATATGCATCCATT	NA	NA	NA	NA
WP_012461997.1|93670_95236_+	hypothetical protein	NA	NA	NA	NA	NA
WP_045916291.1|95239_95647_-	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_109455581.1|95913_97629_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	36.5	2.8e-85
WP_109455609.1|98310_100326_+	AAA family ATPase	NA	A0A2P0VMS9	Tetraselmis_virus	26.3	4.0e-06
WP_109455610.1|100340_101138_+	toprim domain-containing protein	NA	NA	NA	NA	NA
WP_045916182.1|101335_102004_-	hypothetical protein	NA	NA	NA	NA	NA
WP_045916181.1|103055_103424_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_080943599.1|103496_103871_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_045916180.1|106689_107583_-	lipase LipB	NA	NA	NA	NA	NA
WP_052697939.1|108155_108542_-	DUF4102 domain-containing protein	NA	NA	NA	NA	NA
WP_109455611.1|110658_112416_-	hypothetical protein	NA	NA	NA	NA	NA
WP_045916384.1|113091_114189_+	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA	NA
WP_155367768.1|115198_115360_+	hypothetical protein	NA	NA	NA	NA	NA
WP_109455612.1|116359_117616_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_045916364.1|117634_118801_+	hypothetical protein	NA	NA	NA	NA	NA
WP_109455613.1|118908_119391_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_109455614.1|119820_121065_+|integrase	site-specific integrase	integrase	A0A0R6PHM8	Moraxella_phage	25.1	4.2e-22
WP_045918854.1|121194_121530_+	hypothetical protein	NA	NA	NA	NA	NA
WP_109456064.1|122077_122554_+	hypothetical protein	NA	NA	NA	NA	NA
WP_108839640.1|122971_123298_+	hypothetical protein	NA	NA	NA	NA	NA
WP_174191446.1|123751_123985_+	conjugal transfer protein TraB	NA	NA	NA	NA	NA
WP_174191445.1|123969_124668_+	hypothetical protein	NA	NA	NA	NA	NA
WP_045915079.1|124667_124997_+	hypothetical protein	NA	NA	NA	NA	NA
WP_109455615.1|124977_127470_+	TraC family protein	NA	NA	NA	NA	NA
WP_109455616.1|127466_128126_+	type-F conjugative transfer system protein TraW	NA	NA	NA	NA	NA
WP_174190477.1|128209_128383_+	hypothetical protein	NA	NA	NA	NA	NA
WP_109455617.1|129383_129767_+	conjugal transfer protein	NA	NA	NA	NA	NA
WP_109455618.1|130137_130836_+	conjugal transfer protein TraF	NA	NA	NA	NA	NA
WP_109455619.1|130832_132134_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
WP_109455620.1|132133_134773_+	conjugal transfer protein TraG	NA	NA	NA	NA	NA
WP_109455621.1|134795_135941_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_109455622.1|135946_137701_+	type IV secretion system DNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_109455623.1|137710_138670_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
WP_109456065.1|138721_139816_-	toprim domain-containing protein	NA	NA	NA	NA	NA
WP_109455581.1|145170_146886_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	36.5	2.8e-85
WP_109455624.1|147095_147551_+	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_109455625.1|147618_148701_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.1	1.5e-84
149231:149254	attR	AATGGATGCATATAATAAGGTTCT	NA	NA	NA	NA
>prophage 2
NZ_LS398550	Orientia tsutsugamushi isolate Kato chromosome I	2319449	160964	223104	2319449	integrase,transposase,terminase,tRNA	Streptococcus_phage(33.33%)	43	159679:159711	224806:224838
159679:159711	attL	TTGCTGTTGATCTTCATTTTTATTTTGATCATT	NA	NA	NA	NA
WP_162563030.1|160964_161069_+|transposase	transposase family protein	transposase	NA	NA	NA	NA
WP_045916312.1|163001_163382_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	33.0	5.2e-08
WP_045916311.1|163378_164941_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_109455636.1|165147_166476_-	reverse transcriptase	NA	NA	NA	NA	NA
WP_045916176.1|168194_169805_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_162563031.1|170268_171288_-	hypothetical protein	NA	NA	NA	NA	NA
WP_045916174.1|171580_172783_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_045916173.1|172889_173927_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_045916172.1|173986_174820_+	VacJ family lipoprotein	NA	NA	NA	NA	NA
WP_045916171.1|174816_175407_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_080943598.1|175434_176637_+	coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
WP_012461702.1|176677_177190_+	hypothetical protein	NA	A0A067XRB3	Caulobacter_phage	47.7	2.4e-32
WP_012461703.1|177249_177975_+	DNA repair protein RecO	NA	NA	NA	NA	NA
WP_012461709.1|180942_181266_-	DUF721 domain-containing protein	NA	NA	NA	NA	NA
WP_012461710.1|181303_181984_-	DNA repair protein RadC	NA	NA	NA	NA	NA
WP_012461711.1|182232_182604_+	30S ribosomal protein S12	NA	NA	NA	NA	NA
WP_011945044.1|182627_183149_+	30S ribosomal protein S7	NA	NA	NA	NA	NA
WP_045915749.1|183152_185279_+	elongation factor G	NA	A0A1S5SF82	Streptococcus_phage	27.7	2.5e-59
WP_045915750.1|185540_187022_+	S1 RNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_011945048.1|190869_191091_-	cold-shock protein	NA	NA	NA	NA	NA
WP_052697877.1|191955_192180_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_080943546.1|192326_192464_-	hypothetical protein	NA	NA	NA	NA	NA
WP_045915751.1|192959_193832_+	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_052697878.1|194300_196151_+	hypothetical protein	NA	NA	NA	NA	NA
WP_045915752.1|196386_196758_+	HIT domain-containing protein	NA	NA	NA	NA	NA
WP_109455637.1|196805_197855_+	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_080943547.1|197995_198934_-	protoheme IX farnesyltransferase	NA	NA	NA	NA	NA
WP_012461722.1|198944_200531_-	cytochrome c oxidase subunit I	NA	R9VX24	Flavobacterium_phage	41.2	2.1e-10
WP_012461723.1|200723_202145_-|terminase	phage terminase large subunit	terminase	A0A088FB00	Idiomarinaceae_phage	34.2	1.7e-56
WP_012461724.1|202476_203100_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA	NA
WP_045915753.1|203099_203660_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_045915754.1|203669_204770_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_045912682.1|205760_206555_+	exodeoxyribonuclease III	NA	NA	NA	NA	NA
WP_109455638.1|208145_209285_-	reverse transcriptase	NA	NA	NA	NA	NA
WP_012461030.1|209824_210106_+	hypothetical protein	NA	NA	NA	NA	NA
WP_109455639.1|210109_210922_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	31.1	2.8e-27
WP_109455640.1|212080_212698_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_012461731.1|212676_213000_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_041621655.1|213045_213381_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012461734.1|213930_214257_+	hypothetical protein	NA	NA	NA	NA	NA
WP_158296923.1|215882_216020_+	hypothetical protein	NA	NA	NA	NA	NA
WP_045916233.1|217136_221480_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_012461740.1|222897_223104_-|integrase	integrase	integrase	NA	NA	NA	NA
224806:224838	attR	AATGATCAAAATAAAAATGAAGATCAACAGCAA	NA	NA	NA	NA
>prophage 3
NZ_LS398550	Orientia tsutsugamushi isolate Kato chromosome I	2319449	253059	334809	2319449	protease,transposase,tRNA	Salmonella_phage(14.29%)	58	NA	NA
WP_045916136.1|253059_254331_-|tRNA	histidine--tRNA ligase	tRNA	A0A2I2L577	Orpheovirus	22.4	1.0e-23
WP_012461767.1|254333_254819_-	outer membrane lipid asymmetry maintenance protein MlaD	NA	NA	NA	NA	NA
WP_012461768.1|254823_255186_-	NADH ubiquinone oxidoreductase	NA	NA	NA	NA	NA
WP_012461769.1|255157_255664_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	48.5	2.4e-32
WP_012461770.1|255663_256191_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012461771.1|256319_257144_-	DsbA family protein	NA	NA	NA	NA	NA
WP_012461772.1|257272_257593_-	ferredoxin family protein	NA	NA	NA	NA	NA
WP_012461773.1|257598_258309_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_012461774.1|258301_259033_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_045916137.1|259031_259862_+	glutamine synthetase	NA	NA	NA	NA	NA
WP_045916309.1|260696_261197_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012461777.1|261506_261734_+	DUF4102 domain-containing protein	NA	NA	NA	NA	NA
WP_109455645.1|261780_261948_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012461748.1|261944_262415_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_012461976.1|262482_262818_+	hypothetical protein	NA	NA	NA	NA	NA
WP_109455646.1|263490_264462_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_109455647.1|264458_265118_+	type-F conjugative transfer system protein TraW	NA	NA	NA	NA	NA
WP_012460825.1|265204_265408_+	hypothetical protein	NA	NA	NA	NA	NA
WP_174191426.1|265408_266386_+	TraU family protein	NA	NA	NA	NA	NA
WP_109455648.1|266408_266792_+	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
WP_109455649.1|266788_268480_+	conjugal transfer protein TraN	NA	NA	NA	NA	NA
WP_109455650.1|268731_269628_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_109455651.1|269737_270304_+	DUF4065 domain-containing protein	NA	I6R0L8	Salmonella_phage	37.0	2.3e-20
WP_109455652.1|270308_270926_+	conjugal transfer protein TraF	NA	NA	NA	NA	NA
WP_109455653.1|271395_272535_+	reverse transcriptase	NA	NA	NA	NA	NA
WP_109455656.1|274004_275597_+	Flp pilus assembly complex ATPase component TadA	NA	NA	NA	NA	NA
WP_109455657.1|275606_276623_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
WP_045916296.1|278534_279566_+	hypothetical protein	NA	NA	NA	NA	NA
WP_109455658.1|280637_281006_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_109455659.1|281028_281697_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_012461798.1|281711_282413_-	histidine kinase	NA	NA	NA	NA	NA
WP_109455660.1|282477_282756_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155367772.1|282860_283037_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012461800.1|283426_283909_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012461804.1|287581_288061_+	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_012461805.1|288107_289007_+	RNA polymerase sigma factor RpoH	NA	G8CLC7	Synechococcus_phage	26.7	3.5e-10
WP_109455661.1|289696_290251_-	copper chaperone PCu(A)C	NA	NA	NA	NA	NA
WP_012461809.1|293168_294656_-	ankyrin repeat domain-containing protein	NA	A0A0M3ZHP2	Turkeypox_virus	32.7	6.4e-09
WP_109455662.1|303597_304465_-|transposase	IS630 family transposase	transposase	A0A2H4UV16	Bodo_saltans_virus	28.4	4.7e-20
WP_045914765.1|304780_305329_-	cytochrome c family protein	NA	NA	NA	NA	NA
WP_108883954.1|305588_306536_+	paraslipin	NA	S4VT23	Pandoravirus	26.1	3.7e-10
WP_012461822.1|310684_311701_-	P-loop NTPase	NA	NA	NA	NA	NA
WP_045915946.1|311880_312936_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_012461824.1|312959_313826_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_012461825.1|313843_315244_+|protease	DegP-like serine protease TSA47	protease	W5SAB9	Pithovirus	31.1	1.2e-06
WP_045915945.1|315458_316073_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_045915944.1|316336_319120_-	glycoside hydrolase TIM-barrel-like domain-containing protein	NA	A0A0B5A7K5	Paracoccus_phage	28.5	1.5e-96
WP_045915943.1|319318_320335_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	27.1	1.1e-17
WP_045915942.1|320331_321237_+	bifunctional 5,10-methylenetetrahydrofolate dehydrogenase/5,10-methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	38.7	8.8e-30
WP_045915941.1|321171_322557_-	hypothetical protein	NA	NA	NA	NA	NA
WP_045915940.1|322556_324923_-	type I DNA topoisomerase	NA	A0A1V0SCS0	Indivirus	33.7	1.1e-90
WP_045912340.1|325015_325972_-	malate dehydrogenase	NA	NA	NA	NA	NA
WP_012461833.1|326191_326686_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_012461834.1|326854_329386_+	AsmA-like C-terminal region-containing protein	NA	NA	NA	NA	NA
WP_041621667.1|329600_330524_-|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	28.3	1.5e-08
WP_012461836.1|330520_331066_-	peptide deformylase	NA	E3SLL2	Synechococcus_phage	41.7	3.8e-20
WP_109456069.1|332631_333726_+	toprim domain-containing protein	NA	NA	NA	NA	NA
WP_109455663.1|333777_334809_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_LS398550	Orientia tsutsugamushi isolate Kato chromosome I	2319449	489398	559310	2319449	integrase,transposase	Wolbachia_phage(20.0%)	49	525056:525079	558487:558510
WP_109455694.1|489398_490382_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
WP_109456074.1|490433_491528_-	toprim domain-containing protein	NA	NA	NA	NA	NA
WP_109455695.1|496355_496811_+	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_109455696.1|496883_497834_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.1	1.3e-84
WP_109455697.1|497952_498531_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	30.2	1.0e-07
WP_045916303.1|501192_503172_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_109455700.1|504754_505261_-	hypothetical protein	NA	NA	NA	NA	NA
WP_109234480.1|505308_505953_-	ankyrin repeat domain-containing protein	NA	A0A2K9L931	Tupanvirus	33.3	5.7e-15
WP_045916267.1|505987_506563_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A292GI44	Xanthomonas_phage	29.2	4.6e-08
WP_045916315.1|508130_509948_+	ribonucleoside-diphosphate reductase subunit alpha	NA	A0A0K1LMZ5	Caulobacter_phage	54.7	2.1e-187
WP_045916314.1|509970_510963_+	ribonucleotide-diphosphate reductase subunit beta	NA	M1I8A4	Pelagibacter_phage	53.5	2.2e-98
WP_012461952.1|512131_512359_+	DUF4102 domain-containing protein	NA	NA	NA	NA	NA
WP_162563033.1|512528_513587_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_080943620.1|513574_514165_+	ATP-binding cassette domain-containing protein	NA	W8CYL7	Bacillus_phage	44.1	2.9e-21
WP_012461954.1|514133_514481_+	hypothetical protein	NA	NA	NA	NA	NA
WP_070105176.1|514606_514810_+	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA	NA
WP_012461956.1|515438_515567_+	DNA helicase	NA	NA	NA	NA	NA
WP_162563034.1|515649_515937_+	hypothetical protein	NA	NA	NA	NA	NA
WP_045917188.1|517136_517712_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A292GI44	Xanthomonas_phage	29.2	1.1e-06
WP_109455702.1|517749_518394_+	ankyrin repeat domain-containing protein	NA	A0A2K9L931	Tupanvirus	33.0	8.2e-14
WP_162563026.1|518440_518614_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080946937.1|520676_520853_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_109456075.1|521306_521795_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_109456076.1|522273_522738_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_045914126.1|522756_523251_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_109455704.1|523292_523880_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	29.0	1.2e-06
WP_109455705.1|524315_525314_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.5	1.8e-84
525056:525079	attL	TAAAGCTGAAGGTAAAGCTGAAGG	NA	NA	NA	NA
WP_080943627.1|527006_527306_+	hypothetical protein	NA	NA	NA	NA	NA
WP_109455706.1|527375_527831_-	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_109455581.1|528040_529756_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	36.5	2.8e-85
WP_109455707.1|530455_532453_+	AAA family ATPase	NA	A0A2P0VMS9	Tetraselmis_virus	25.4	2.3e-06
WP_109455708.1|532467_533304_+	toprim domain-containing protein	NA	NA	NA	NA	NA
WP_109456077.1|535151_536246_+	toprim domain-containing protein	NA	NA	NA	NA	NA
WP_109227210.1|536297_537317_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
WP_109455709.1|537326_539081_-	type IV secretion system DNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_045916319.1|539084_540224_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_109455666.1|544194_544893_-	conjugal transfer protein TraF	NA	NA	NA	NA	NA
WP_109455667.1|544889_546584_-	conjugal transfer protein TraN	NA	NA	NA	NA	NA
WP_109455668.1|546580_546964_-	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
WP_174190470.1|546986_547964_-	TraU family protein	NA	NA	NA	NA	NA
WP_174190469.1|547964_548138_-	hypothetical protein	NA	NA	NA	NA	NA
WP_109455710.1|548221_548863_-	type-F conjugative transfer system protein TraW	NA	NA	NA	NA	NA
WP_109455711.1|548878_549157_-	conjugal transfer protein	NA	NA	NA	NA	NA
WP_109455712.1|551350_551680_-	conjugal transfer protein	NA	NA	NA	NA	NA
WP_109455713.1|551679_553002_-	conjugal transfer protein	NA	NA	NA	NA	NA
WP_045916306.1|553811_554288_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012460929.1|554836_555172_-	hypothetical protein	NA	NA	NA	NA	NA
WP_109455714.1|555292_556492_-|integrase	site-specific integrase	integrase	A0A0R6PGY7	Moraxella_phage	26.4	9.3e-27
WP_109455715.1|558359_559310_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.1	1.3e-84
558487:558510	attR	CCTTCAGCTTTACCTTCAGCTTTA	NA	NA	NA	NA
>prophage 5
NZ_LS398550	Orientia tsutsugamushi isolate Kato chromosome I	2319449	588482	664837	2319449	integrase,transposase,tRNA	Salmonella_phage(11.11%)	50	620199:620224	657881:657906
WP_080943559.1|588482_588686_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_108883845.1|588685_588760_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_155367738.1|588835_588976_-	hypothetical protein	NA	NA	NA	NA	NA
WP_045916383.1|593856_594192_+	hypothetical protein	NA	NA	NA	NA	NA
WP_109455719.1|594741_595218_+	hypothetical protein	NA	NA	NA	NA	NA
WP_109455720.1|595362_595698_+	hypothetical protein	NA	NA	NA	NA	NA
WP_109455721.1|596815_597310_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_109455722.1|597351_597939_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	J9Q7H7	Salmonella_phage	34.1	5.2e-07
WP_012462182.1|599390_599939_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_045915774.1|602120_604373_+	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_045915775.1|604917_608571_+	pentapeptide repeat-containing protein	NA	NA	NA	NA	NA
WP_012462189.1|610529_611771_-|tRNA	tyrosine--tRNA ligase	tRNA	K4F5T3	Cronobacter_phage	35.7	3.0e-68
WP_045915757.1|615103_616021_-	S49 family peptidase	NA	E5AFY0	Erwinia_phage	30.5	8.1e-15
WP_045915756.1|616331_617681_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_012462196.1|617844_618681_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_011944320.1|618820_619162_+	DUF2610 domain-containing protein	NA	NA	NA	NA	NA
620199:620224	attL	TAAATAAACGTAGACCATTGGTCAGC	NA	NA	NA	NA
WP_080943556.1|621968_622304_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_045915835.1|622468_623392_-|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	NA	NA	NA	NA
WP_080943555.1|624271_624439_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_011944324.1|624568_624790_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012462202.1|625064_625289_-	50S ribosomal protein L31	NA	NA	NA	NA	NA
WP_012462203.1|625298_625586_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_045915830.1|625829_626702_+	DMT family transporter	NA	NA	NA	NA	NA
WP_045915829.1|626719_627976_+	MFS transporter	NA	Q6JIH2	Burkholderia_virus	29.6	3.0e-44
WP_045915828.1|628695_629448_+	hypothetical protein	NA	NA	NA	NA	NA
WP_045915827.1|629813_631025_-	serine hydrolase	NA	G1BSP8	Mycobacterium_virus	25.5	9.4e-11
WP_045915826.1|631050_632844_-|tRNA	aspartate--tRNA ligase	tRNA	NA	NA	NA	NA
WP_045915825.1|633107_637298_-	DNA-directed RNA polymerase subunit beta'	NA	A0A0N9QZ01	Chrysochromulina_ericina_virus	24.9	1.5e-52
WP_012462210.1|637414_641539_-	DNA-directed RNA polymerase subunit beta	NA	F2Y186	Organic_Lake_phycodnavirus	29.8	8.7e-24
WP_012462211.1|641854_642244_-	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_012462212.1|642265_642775_-	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_045915824.1|642778_643528_-	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_012462214.1|643531_643978_-	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_041621696.1|644017_644572_-	transcription termination/antitermination factor NusG	NA	NA	NA	NA	NA
WP_012462216.1|644595_644796_-	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_012462217.1|645058_646243_-	elongation factor Tu	NA	A0A1V0SGC3	Hokovirus	28.2	5.9e-34
WP_012462218.1|646415_647180_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_012462219.1|647296_647908_-	recombination protein RecR	NA	NA	NA	NA	NA
WP_012462220.1|647995_648532_-	septation protein A	NA	NA	NA	NA	NA
WP_012462221.1|648535_649375_-	FTR1 family protein	NA	NA	NA	NA	NA
WP_012462222.1|649403_649769_-	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_045916119.1|650234_651467_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_045914269.1|651653_652385_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.6	1.1e-27
WP_080943588.1|652377_653004_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_109455723.1|657950_658811_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
657881:657906	attR	GCTGACCAATGGTCTACGTTTATTTA	NA	NA	NA	NA
WP_109456080.1|660701_660809_-	hypothetical protein	NA	NA	NA	NA	NA
WP_045915796.1|662016_662886_+	hypothetical protein	NA	NA	NA	NA	NA
WP_109455724.1|663234_664095_+	hypothetical protein	NA	NA	NA	NA	NA
WP_155367734.1|664078_664240_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012462268.1|664519_664837_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_LS398550	Orientia tsutsugamushi isolate Kato chromosome I	2319449	730969	809100	2319449	integrase,transposase,tRNA	Streptococcus_phage(15.38%)	58	742697:742741	815881:815925
WP_109455736.1|730969_731905_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
WP_109455737.1|731956_733051_-	toprim domain-containing protein	NA	NA	NA	NA	NA
WP_045916403.1|733238_734879_+	ankyrin repeat domain-containing protein	NA	A0A2H4X210	Flamingopox_virus	30.1	3.6e-05
WP_109455738.1|738042_738498_+	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_109455739.1|738591_739125_+	hypothetical protein	NA	NA	NA	NA	NA
WP_109455588.1|739151_739727_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	31.0	3.0e-07
WP_109455740.1|739827_740685_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_109455741.1|740706_741435_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_012461017.1|741808_742618_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	26.7	2.2e-19
WP_109455742.1|742621_743125_-	hypothetical protein	NA	NA	NA	NA	NA
742697:742741	attL	GTCTAAATATGTATCTCTTGATAAGTTTATTGTTGTACCAACTCC	NA	NA	NA	NA
WP_045916339.1|743172_743817_-	ankyrin repeat domain-containing protein	NA	A0A2K9L931	Tupanvirus	33.0	1.3e-14
WP_174191428.1|746453_747035_+	hypothetical protein	NA	NA	NA	NA	NA
WP_174191450.1|747021_748014_+	hypothetical protein	NA	NA	NA	NA	NA
WP_109455743.1|748022_749459_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	36.9	7.4e-71
WP_109455744.1|749727_750321_+	ankyrin repeat domain-containing protein	NA	K7Y837	Megavirus	32.8	3.4e-14
WP_109455742.1|750418_750922_+	hypothetical protein	NA	NA	NA	NA	NA
WP_045918899.1|752102_752831_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_109455745.1|752852_753710_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_045916189.1|754392_754920_-	hypothetical protein	NA	NA	NA	NA	NA
WP_045916188.1|755073_755700_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012461586.1|756255_757512_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_155367755.1|758035_759478_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012461584.1|759715_760252_-	preprotein translocase SecA subunit-like protein	NA	NA	NA	NA	NA
WP_045916186.1|761031_762354_-	hypothetical protein	NA	NA	NA	NA	NA
WP_109455581.1|762594_764310_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	36.5	2.8e-85
WP_109455746.1|765009_767007_+	AAA family ATPase	NA	K4Q562	Roseovarius_Plymouth_podovirus	25.4	3.0e-06
WP_109455747.1|767021_767819_+	toprim domain-containing protein	NA	NA	NA	NA	NA
WP_109456082.1|769659_770754_+	toprim domain-containing protein	NA	NA	NA	NA	NA
WP_109455748.1|770805_771825_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
WP_109455749.1|771834_773589_-	Flp pilus assembly complex ATPase component TadA	NA	NA	NA	NA	NA
WP_109455750.1|774744_777378_-	conjugal transfer protein TraG	NA	NA	NA	NA	NA
WP_109455751.1|778677_779394_-	conjugal transfer protein TraF	NA	NA	NA	NA	NA
WP_109455752.1|779509_779971_-	DUF4065 domain-containing protein	NA	I6R0L8	Salmonella_phage	38.0	5.9e-22
WP_109455753.1|780081_781485_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_109455754.1|784662_785046_-	conjugal transfer protein	NA	NA	NA	NA	NA
WP_174191429.1|785068_786046_-	TraU family protein	NA	NA	NA	NA	NA
WP_174190484.1|786046_786223_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012461976.1|788607_788943_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012461748.1|789010_789481_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_109455645.1|789477_789645_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012461777.1|789691_789919_-	DUF4102 domain-containing protein	NA	NA	NA	NA	NA
WP_045916309.1|790343_790844_-	hypothetical protein	NA	NA	NA	NA	NA
WP_109455755.1|791469_792156_-	DUF4102 domain-containing protein	NA	NA	NA	NA	NA
WP_045916248.1|793275_793866_+	hypothetical protein	NA	NA	NA	NA	NA
WP_045916247.1|794117_795110_-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_045916246.1|795172_796444_-|tRNA	tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB	tRNA	NA	NA	NA	NA
WP_109455756.1|796653_797136_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_155367767.1|797536_797701_+	DUF4102 domain-containing protein	NA	NA	NA	NA	NA
WP_109456085.1|797717_798293_+|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	NA	NA	NA	NA
WP_109455757.1|798317_798764_+|integrase	site-specific integrase	integrase	A0A0R6PGY7	Moraxella_phage	32.3	2.7e-08
WP_045916207.1|798893_799229_+	hypothetical protein	NA	NA	NA	NA	NA
WP_109455758.1|799942_800251_+	hypothetical protein	NA	NA	NA	NA	NA
WP_045916205.1|801376_801991_-	hypothetical protein	NA	NA	NA	NA	NA
WP_109455759.1|802127_802925_-	toprim domain-containing protein	NA	NA	NA	NA	NA
WP_109455760.1|802939_804955_-	AAA family ATPase	NA	A0A2P0VMS9	Tetraselmis_virus	25.9	6.8e-06
WP_109455581.1|805636_807352_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	36.5	2.8e-85
WP_109455761.1|807618_808017_+	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_109455762.1|808089_809100_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.1	1.1e-84
815881:815925	attR	GTCTAAATATGTATCTCTTGATAAGTTTATTGTTGTACCAACTCC	NA	NA	NA	NA
>prophage 7
NZ_LS398550	Orientia tsutsugamushi isolate Kato chromosome I	2319449	836597	907646	2319449	protease,transposase,capsid,integrase,head,tRNA	Tupanvirus(16.67%)	54	849571:849612	915631:915672
WP_045915915.1|836597_838544_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	38.2	1.2e-119
WP_045915916.1|838794_840135_+	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_045915917.1|840228_841257_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_045915918.1|841505_844145_+	preprotein translocase subunit SecA	NA	NA	NA	NA	NA
WP_052697909.1|844635_846852_-	AAA family ATPase	NA	A0A2R8FE73	Brazilian_cedratvirus	25.7	1.7e-10
WP_011944565.1|848249_848735_-	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_109455767.1|849090_849501_+	hypothetical protein	NA	NA	NA	NA	NA
849571:849612	attL	ATTAGACCTCTTTCGAAACTGGTTAAGGTAGTTCAAAATTAT	NA	NA	NA	NA
WP_041621804.1|849849_850062_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_052697924.1|852734_853871_-	DNA replication/repair protein RecF	NA	NA	NA	NA	NA
WP_045916093.1|853891_854704_-	FtsQ-type POTRA domain-containing protein	NA	NA	NA	NA	NA
WP_080943583.1|854714_855689_-	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
WP_012461532.1|855666_856578_-	UDP-N-acetylmuramate dehydrogenase	NA	NA	NA	NA	NA
WP_045916094.1|856546_858019_-	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA	NA
WP_045916089.1|858222_858963_-	type-specific antigen TSA56	NA	NA	NA	NA	NA
WP_045916090.1|859191_860781_-	type-specific antigen TSA56	NA	NA	NA	NA	NA
WP_045916091.1|861325_862204_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_012461527.1|862196_864248_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_080943584.1|864225_865194_+	threonylcarbamoyl-AMP synthase	NA	S4VW33	Pandoravirus	33.8	2.7e-37
WP_109235163.1|868126_868771_+	SCO family protein	NA	NA	NA	NA	NA
WP_155367767.1|869207_869372_+	DUF4102 domain-containing protein	NA	NA	NA	NA	NA
WP_109456085.1|869388_869964_+|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	NA	NA	NA	NA
WP_109455768.1|869988_870435_+|integrase	site-specific integrase	integrase	A0A0R6PGY7	Moraxella_phage	32.3	2.7e-08
WP_109455769.1|870560_870896_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012461522.1|871445_871910_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080503932.1|873595_873922_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_045916228.1|878093_878840_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012461515.1|879174_879666_-	30S ribosomal protein S9	NA	NA	NA	NA	NA
WP_012461514.1|879669_880152_-	50S ribosomal protein L13	NA	NA	NA	NA	NA
WP_012461513.1|880293_881145_+|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_045916227.1|881146_882013_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_045916226.1|881999_882740_-	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA	NA
WP_045916225.1|882903_883242_+	DUF167 domain-containing protein	NA	NA	NA	NA	NA
WP_045916224.1|883270_884239_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_045916230.1|884294_884774_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_109455770.1|884952_885306_-	TrbC/VirB2 family protein	NA	NA	NA	NA	NA
WP_080943557.1|885362_885722_-	TrbC/VirB2 family protein	NA	NA	NA	NA	NA
WP_045915855.1|885784_886141_-	TrbC/VirB2 family protein	NA	NA	NA	NA	NA
WP_045915856.1|886386_887886_-	NTP/NDP exchange transporter	NA	NA	NA	NA	NA
WP_080943558.1|888437_888719_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_045915858.1|889017_889731_+	hypothetical protein	NA	NA	NA	NA	NA
WP_045915859.1|890029_891298_-	NADH-quinone oxidoreductase subunit NuoF	NA	NA	NA	NA	NA
WP_045915860.1|891315_891870_-	NADH-quinone oxidoreductase subunit NuoE	NA	NA	NA	NA	NA
WP_045912545.1|891866_893057_-	NADH-quinone oxidoreductase subunit D	NA	NA	NA	NA	NA
WP_045915861.1|893068_893659_-	NADH-quinone oxidoreductase subunit C	NA	NA	NA	NA	NA
WP_011944977.1|893669_894185_-	NADH-quinone oxidoreductase subunit B	NA	NA	NA	NA	NA
WP_045915862.1|894197_894569_-	NADH-quinone oxidoreductase subunit A	NA	NA	NA	NA	NA
WP_012461497.1|894773_895004_+	hypothetical protein	NA	NA	NA	NA	NA
WP_045915863.1|897226_898072_+	YihY/virulence factor BrkB family protein	NA	NA	NA	NA	NA
WP_109455771.1|899778_900480_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012461493.1|901298_902564_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_045915864.1|902768_904130_+	cell division protein FtsZ	NA	NA	NA	NA	NA
WP_045915865.1|904213_905185_+	hypothetical protein	NA	NA	NA	NA	NA
WP_045915866.1|905964_906519_+|head,protease	HK97 family phage prohead protease	head,protease	I6S2W2	Marinomonas_phage	43.8	2.9e-23
WP_045914452.1|906530_907646_+|capsid	phage major capsid protein	capsid	B0VK33	Azospirillum_phage	39.9	1.4e-53
915631:915672	attR	ATTAGACCTCTTTCGAAACTGGTTAAGGTAGTTCAAAATTAT	NA	NA	NA	NA
>prophage 8
NZ_LS398550	Orientia tsutsugamushi isolate Kato chromosome I	2319449	924737	994176	2319449	integrase,transposase,tRNA	Wolbachia_phage(11.11%)	57	936833:936860	993347:993374
WP_109455777.1|924737_925664_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	A0A1B2LRR6	Wolbachia_phage	60.3	2.6e-85
WP_012462108.1|925731_925995_-	hypothetical protein	NA	NA	NA	NA	NA
WP_109455778.1|926359_926821_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_155367724.1|926917_927061_-	hypothetical protein	NA	NA	NA	NA	NA
WP_109455779.1|927144_927600_-	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_109455581.1|927809_929525_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	36.5	2.8e-85
WP_109455780.1|930204_932220_+	AAA family ATPase	NA	K4Q562	Roseovarius_Plymouth_podovirus	25.4	3.1e-06
WP_109455747.1|932234_933032_+	toprim domain-containing protein	NA	NA	NA	NA	NA
WP_109456082.1|934872_935967_+	toprim domain-containing protein	NA	NA	NA	NA	NA
WP_109455781.1|936018_937062_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
936833:936860	attL	AAGGCAGAGCTGAAGGTATAGAGATTGG	NA	NA	NA	NA
WP_109455782.1|937071_938664_-	Flp pilus assembly complex ATPase component TadA	NA	NA	NA	NA	NA
WP_109455785.1|939719_939911_-	conjugal transfer protein TraF	NA	NA	NA	NA	NA
WP_041621572.1|941268_941574_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080943617.1|941626_942013_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_080943616.1|941991_942609_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_045916379.1|944220_945510_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_045915919.1|948633_950562_-	DUF3857 domain-containing protein	NA	NA	NA	NA	NA
WP_045915920.1|950607_952506_-	DUF3857 domain-containing protein	NA	NA	NA	NA	NA
WP_045915921.1|952655_953576_+	DMT family transporter	NA	NA	NA	NA	NA
WP_045915922.1|953613_954969_-	DNA repair protein RadA	NA	NA	NA	NA	NA
WP_045912319.1|954968_955541_-	RsmD family RNA methyltransferase	NA	NA	NA	NA	NA
WP_045915923.1|955559_956045_-	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_045915924.1|956284_957007_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_045915925.1|957001_957490_-	conjugal transfer protein TraF	NA	NA	NA	NA	NA
WP_045915926.1|957819_958749_-	site-specific tyrosine recombinase XerD	NA	S5W9T9	Leptospira_phage	28.5	4.2e-19
WP_045915927.1|959105_960479_+	TolC family protein	NA	NA	NA	NA	NA
WP_045915928.1|960523_961096_+	DUF2497 domain-containing protein	NA	NA	NA	NA	NA
WP_045915929.1|961097_962960_+	hypothetical protein	NA	NA	NA	NA	NA
WP_045915930.1|963007_963772_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_012460802.1|963768_964143_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_045915931.1|964169_966365_+	ATP-dependent RecD-like DNA helicase	NA	A0A0H3UZA5	Geobacillus_virus	27.4	2.1e-53
WP_045915932.1|967367_968270_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_045915933.1|968250_969147_+	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_012460806.1|969149_969611_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	48.6	1.4e-28
WP_045913288.1|969630_970539_+	signal peptide peptidase SppA	NA	A0A0F6TJW1	Escherichia_coli_O157_typing_phage	31.6	3.2e-19
WP_045915934.1|970549_971458_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_045915935.1|971478_971925_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_045915936.1|971908_972643_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	E3SPA9	Prochlorococcus_phage	28.6	8.2e-18
WP_109455786.1|973782_974193_+	DUF4102 domain-containing protein	NA	NA	NA	NA	NA
WP_109455787.1|975301_975637_+	hypothetical protein	NA	NA	NA	NA	NA
WP_109455788.1|975636_976188_+	conjugal transfer protein	NA	NA	NA	NA	NA
WP_012460817.1|976184_976487_+	hypothetical protein	NA	NA	NA	NA	NA
WP_109455789.1|976678_977164_+	conjugal transfer protein	NA	NA	NA	NA	NA
WP_045913550.1|977163_977493_+	hypothetical protein	NA	NA	NA	NA	NA
WP_109455711.1|979685_979964_+	conjugal transfer protein	NA	NA	NA	NA	NA
WP_109455710.1|979979_980621_+	type-F conjugative transfer system protein TraW	NA	NA	NA	NA	NA
WP_174190469.1|980704_980878_+	hypothetical protein	NA	NA	NA	NA	NA
WP_174191430.1|980878_981856_+	TraU family protein	NA	NA	NA	NA	NA
WP_109455790.1|981887_982301_+	conjugal transfer protein TraN	NA	NA	NA	NA	NA
WP_109455791.1|982506_982698_+	conjugal transfer protein TraF	NA	NA	NA	NA	NA
WP_045915837.1|983997_984753_+	conjugal transfer protein TraG N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_109455673.1|985621_985966_+	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_012460832.1|986026_986356_+	Flp pilus assembly complex ATPase component TadA	NA	NA	NA	NA	NA
WP_045916330.1|987040_989512_+	hypothetical protein	NA	NA	NA	NA	NA
WP_109455792.1|990199_991066_+|transposase	IS630 family transposase	transposase	A0A2H4UV16	Bodo_saltans_virus	28.8	3.2e-21
WP_109456088.1|992160_993207_+	type IV secretion system DNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_109455793.1|993216_994176_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
993347:993374	attR	CCAATCTCTATACCTTCAGCTCTGCCTT	NA	NA	NA	NA
>prophage 9
NZ_LS398550	Orientia tsutsugamushi isolate Kato chromosome I	2319449	1092704	1172785	2319449	integrase,transposase	Wolbachia_phage(14.29%)	58	1110567:1110626	1155937:1156022
WP_109455815.1|1092704_1093736_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
WP_109455816.1|1093787_1094882_-	toprim domain-containing protein	NA	NA	NA	NA	NA
WP_109455817.1|1095200_1097522_-	AAA family ATPase	NA	K4Q562	Roseovarius_Plymouth_podovirus	25.4	3.5e-06
WP_012460842.1|1097667_1098123_+	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_155367766.1|1098206_1098350_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012461022.1|1098446_1098728_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_045916373.1|1099307_1100459_-	hypothetical protein	NA	NA	NA	NA	NA
WP_045916374.1|1100764_1101139_-	hypothetical protein	NA	NA	NA	NA	NA
WP_109455818.1|1101981_1105419_+	response regulator	NA	Q8QKV7	Ectocarpus_siliculosus_virus	22.6	4.6e-10
WP_109455819.1|1106545_1107568_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.1	1.4e-84
WP_109455626.1|1107688_1108276_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	J9Q7H7	Salmonella_phage	35.7	6.2e-08
WP_109455797.1|1108317_1108812_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_109456066.1|1108830_1109292_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_109456092.1|1109779_1110259_-	sensor histidine kinase	NA	NA	NA	NA	NA
1110567:1110626	attL	ATATTGTTATTTTCCATATTATTCTCCTATGGTTAAGTTTATTAACTTTGTTTTTTTAGA	NA	NA	NA	NA
WP_109234476.1|1110797_1111466_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_109455820.1|1111480_1112182_-	histidine kinase	NA	NA	NA	NA	NA
WP_045918672.1|1112246_1112525_-	hypothetical protein	NA	NA	NA	NA	NA
WP_109455822.1|1115917_1117633_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080503905.1|1117841_1118327_-	conjugal transfer protein	NA	NA	NA	NA	NA
WP_012460817.1|1118518_1118821_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041621572.1|1119249_1119555_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080943617.1|1119607_1119994_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_080943616.1|1119972_1120590_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_109456093.1|1121713_1122211_-	hypothetical protein	NA	NA	NA	NA	NA
WP_045916086.1|1123121_1123907_+	hypothetical protein	NA	NA	NA	NA	NA
WP_045916085.1|1124071_1126120_+	ComEC/Rec2 family competence protein	NA	NA	NA	NA	NA
WP_045916084.1|1126786_1128364_+	GHKL domain-containing protein	NA	W8CYF6	Bacillus_phage	24.4	1.6e-05
WP_045916083.1|1128504_1129977_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_045916087.1|1130087_1131848_+	pentapeptide repeat-containing protein	NA	NA	NA	NA	NA
WP_045916082.1|1133717_1134986_-	ankyrin repeat domain-containing protein	NA	A0A2H4X242	Flamingopox_virus	35.6	3.5e-16
WP_045916081.1|1135740_1136592_-	rod shape-determining protein MreC	NA	NA	NA	NA	NA
WP_011944864.1|1136598_1137666_-	rod shape-determining protein	NA	NA	NA	NA	NA
WP_052697922.1|1137766_1138069_-	2-oxo acid dehydrogenase subunit E2	NA	NA	NA	NA	NA
WP_162563038.1|1138071_1138341_-	2-oxo acid dehydrogenase subunit E2	NA	NA	NA	NA	NA
WP_109455823.1|1138460_1140452_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080943613.1|1140893_1145060_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_045916242.1|1145867_1147895_+	Rne/Rng family ribonuclease	NA	NA	NA	NA	NA
WP_109455825.1|1149203_1150919_+	hypothetical protein	NA	NA	NA	NA	NA
WP_109455826.1|1150927_1152364_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	37.0	1.8e-72
WP_109455827.1|1152597_1153173_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A292GI44	Xanthomonas_phage	28.6	3.9e-07
WP_109455828.1|1153207_1153852_+	ankyrin repeat domain-containing protein	NA	A0A2K9L931	Tupanvirus	33.0	2.8e-14
WP_109227213.1|1153899_1154448_+	hypothetical protein	NA	NA	NA	NA	NA
WP_109455829.1|1154451_1155261_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	26.0	6.9e-18
WP_045915136.1|1155636_1155915_+	hypothetical protein	NA	NA	NA	NA	NA
WP_109455830.1|1155979_1156681_+	sensor histidine kinase	NA	NA	NA	NA	NA
1155937:1156022	attR	TCTAAAAAAACAAAGTTAATAAACTTAACCATAGGAGAATAATATGGAAAATAACAATATATATTTGATTCAATATATTAGGCATA	NA	NA	NA	NA
WP_109456094.1|1157134_1157611_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_109456095.1|1158098_1158560_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_109455831.1|1158578_1159073_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_109455832.1|1159114_1159702_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	J9Q7H7	Salmonella_phage	35.7	4.3e-09
WP_109455833.1|1159823_1160906_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.1	2.0e-84
WP_045915951.1|1161506_1162580_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_155367724.1|1162676_1162820_-	hypothetical protein	NA	NA	NA	NA	NA
WP_109455834.1|1162903_1163359_-	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_109455581.1|1163568_1165284_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	36.5	2.8e-85
WP_109455835.1|1165983_1167975_+	AAA family ATPase	NA	A0A2P0VMS9	Tetraselmis_virus	26.3	3.0e-06
WP_109455836.1|1167989_1168826_+	toprim domain-containing protein	NA	NA	NA	NA	NA
WP_109456096.1|1170667_1171762_+	toprim domain-containing protein	NA	NA	NA	NA	NA
WP_109455837.1|1171813_1172785_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_LS398550	Orientia tsutsugamushi isolate Kato chromosome I	2319449	1314891	1399284	2319449	integrase,transposase	Wolbachia_phage(25.0%)	56	1356208:1356226	1410961:1410979
WP_109455866.1|1314891_1315782_+|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	NA	NA	NA	NA
WP_109456098.1|1315739_1316210_+|integrase	site-specific integrase	integrase	B6SD79	Bacteriophage	27.8	5.5e-07
WP_045916236.1|1316265_1316601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012460817.1|1317151_1317454_+	hypothetical protein	NA	NA	NA	NA	NA
WP_109455671.1|1317645_1318131_+	conjugal transfer protein	NA	NA	NA	NA	NA
WP_045912833.1|1318130_1318451_+	hypothetical protein	NA	NA	NA	NA	NA
WP_109455670.1|1318431_1320921_+	TraC family protein	NA	NA	NA	NA	NA
WP_109455867.1|1320917_1321577_+	type-F conjugative transfer system protein TraW	NA	NA	NA	NA	NA
WP_109455868.1|1321614_1322559_+	TraU family protein	NA	NA	NA	NA	NA
WP_109455790.1|1322590_1323004_+	conjugal transfer protein TraN	NA	NA	NA	NA	NA
WP_109455791.1|1323209_1323401_+	conjugal transfer protein TraF	NA	NA	NA	NA	NA
WP_109455869.1|1324700_1325651_+	conjugal transfer protein TraG N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_011945086.1|1326846_1327716_-	RMD1 family protein	NA	NA	NA	NA	NA
WP_155367752.1|1329214_1329355_+	hypothetical protein	NA	NA	NA	NA	NA
WP_045916165.1|1330031_1331111_-	COX15/CtaA family protein	NA	NA	NA	NA	NA
WP_045916275.1|1335577_1338181_-	hypothetical protein	NA	NA	NA	NA	NA
WP_045916263.1|1340273_1340897_-	CvpA family protein	NA	NA	NA	NA	NA
WP_012461313.1|1340893_1341466_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_045916262.1|1341638_1343381_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_012461311.1|1343361_1343859_+	hypothetical protein	NA	NA	NA	NA	NA
WP_045916261.1|1344146_1345361_+	aspartate kinase	NA	NA	NA	NA	NA
WP_158296914.1|1346504_1346693_-	hypothetical protein	NA	NA	NA	NA	NA
WP_109455870.1|1347472_1347733_-	reverse transcriptase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_045916107.1|1348236_1349316_-	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	NA	NA	NA	NA	NA
WP_012461305.1|1349319_1350447_-	cell division protein FtsW	NA	NA	NA	NA	NA
WP_045916108.1|1350453_1351872_-	UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	NA	NA	NA	NA	NA
WP_045916109.1|1351954_1352581_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_109455725.1|1354972_1355254_+	hypothetical protein	NA	NA	NA	NA	NA
WP_109455871.1|1355257_1356067_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	27.1	3.9e-21
1356208:1356226	attL	AATGTGATAATTTCGCATC	NA	NA	NA	NA
WP_045916370.1|1358141_1358717_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	30.2	8.7e-07
WP_080943633.1|1359227_1359596_+	hypothetical protein	NA	NA	NA	NA	NA
WP_109455873.1|1359654_1360110_-	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_109455581.1|1360318_1362034_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	36.5	2.8e-85
WP_174191452.1|1367415_1368510_+	toprim domain-containing protein	NA	NA	NA	NA	NA
WP_045916258.1|1368494_1369511_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
WP_109455874.1|1369520_1370588_-	type IV secretion system DNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_109455875.1|1370593_1371112_-	Flp pilus assembly complex ATPase component TadA	NA	NA	NA	NA	NA
WP_080946937.1|1373632_1373809_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_012460852.1|1373937_1374219_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012461209.1|1374260_1374749_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_109456100.1|1375226_1375691_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_109455876.1|1375709_1376204_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_109455877.1|1376245_1376833_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	J9Q7H7	Salmonella_phage	34.9	3.6e-08
WP_109455878.1|1376953_1377880_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	A0A1B2LRR6	Wolbachia_phage	58.7	2.2e-84
WP_109455879.1|1377947_1378211_-	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_045916282.1|1378541_1378748_-	hypothetical protein	NA	NA	NA	NA	NA
WP_109455880.1|1379548_1380025_+	hypothetical protein	NA	NA	NA	NA	NA
WP_045916284.1|1380410_1381538_+	hypothetical protein	NA	NA	NA	NA	NA
WP_109455881.1|1385939_1386668_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_012461109.1|1388942_1389686_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_012461108.1|1389810_1390071_+	peptide chain release factor RF-2	NA	NA	NA	NA	NA
WP_050731345.1|1390257_1390560_-	hypothetical protein	NA	NA	NA	NA	NA
WP_045916382.1|1392068_1394219_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.2	3.3e-107
WP_041621607.1|1396803_1397394_-	phospholipase D family protein	NA	A0A1B2LRT6	Wolbachia_phage	48.9	1.3e-26
WP_080943616.1|1398301_1398919_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_080943617.1|1398897_1399284_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
1410961:1410979	attR	AATGTGATAATTTCGCATC	NA	NA	NA	NA
>prophage 11
NZ_LS398550	Orientia tsutsugamushi isolate Kato chromosome I	2319449	1404864	1441944	2319449	protease,transposase,tRNA	Thermus_phage(16.67%)	25	NA	NA
WP_109455887.1|1404864_1405833_-|transposase	IS110-like element ISOt5 family transposase	transposase	A0A1S7J231	Thermus_phage	29.8	1.9e-22
WP_045913929.1|1406003_1406339_-	conjugal transfer protein TraG N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_109455852.1|1407863_1409192_-	reverse transcriptase	NA	NA	NA	NA	NA
WP_109455888.1|1409731_1410013_+	hypothetical protein	NA	NA	NA	NA	NA
WP_109455716.1|1411378_1412095_+	hypothetical protein	NA	NA	NA	NA	NA
WP_174191427.1|1412443_1413172_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_012462309.1|1413612_1414188_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	B3FJI5	Pseudomonas_phage	40.0	5.7e-06
WP_109455889.1|1414309_1415248_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	A0A1B2LRR6	Wolbachia_phage	60.6	1.7e-84
WP_109455890.1|1415315_1415771_-	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_174191433.1|1415938_1417945_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_109455892.1|1417959_1418796_+	toprim domain-containing protein	NA	NA	NA	NA	NA
WP_045916034.1|1419071_1419629_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080943575.1|1420657_1422829_+	hypothetical protein	NA	NA	NA	NA	NA
WP_045916036.1|1423565_1425026_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	tRNA	NA	NA	NA	NA
WP_045916037.1|1425028_1426507_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
WP_045912509.1|1426506_1426806_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_045916038.1|1426888_1428625_-	ribonuclease J	NA	NA	NA	NA	NA
WP_045916039.1|1428738_1429476_-	response regulator transcription factor	NA	A0A0K0PVG9	Roseobacter_phage	57.7	1.9e-14
WP_158296909.1|1432859_1432994_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041621747.1|1436029_1436824_+	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_109455893.1|1437156_1438024_+|transposase	IS630 family transposase	transposase	A0A2H4UV16	Bodo_saltans_virus	33.8	3.2e-21
WP_011944867.1|1438803_1439424_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	59.3	1.3e-59
WP_080503907.1|1440311_1440497_+	HNH endonuclease	NA	NA	NA	NA	NA
WP_012461061.1|1440808_1441684_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_080503908.1|1441704_1441944_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_LS398550	Orientia tsutsugamushi isolate Kato chromosome I	2319449	1673611	1740689	2319449	integrase,portal,transposase	Wolbachia_phage(14.29%)	60	1683010:1683030	1750484:1750504
WP_045915961.1|1673611_1674802_+|portal	phage portal protein	portal	W8ECU7	Geobacillus_phage	37.1	5.4e-59
WP_045915960.1|1674820_1675087_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011945001.1|1675512_1675752_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_045915959.1|1675930_1677493_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_045915958.1|1679143_1679830_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_045915957.1|1680307_1681390_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012461129.1|1681550_1681877_-	reverse transcriptase	NA	NA	NA	NA	NA
1683010:1683030	attL	TAGGATTTACAAATCTTCCAA	NA	NA	NA	NA
WP_012461126.1|1685040_1686222_-	multidrug effflux MFS transporter	NA	S4TR35	Salmonella_phage	22.0	5.2e-14
WP_045915956.1|1686707_1686941_-	hypothetical protein	NA	NA	NA	NA	NA
WP_109455938.1|1689544_1690054_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_109455939.1|1690068_1690737_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_109455940.1|1691985_1692480_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_109455941.1|1692521_1692914_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1X9SH80	Bradyrhizobium_phage	38.8	7.7e-07
WP_012461118.1|1692953_1693109_+	hypothetical protein	NA	NA	NA	NA	NA
WP_109455942.1|1693230_1694133_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	A0A1B2LRR6	Wolbachia_phage	57.6	1.0e-86
WP_109455943.1|1694202_1694466_-	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_109455778.1|1694796_1695258_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_155367724.1|1695354_1695498_-	hypothetical protein	NA	NA	NA	NA	NA
WP_109455944.1|1695581_1695980_-	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_109455945.1|1696563_1698282_+	hypothetical protein	NA	NA	NA	NA	NA
WP_109455946.1|1698290_1699727_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	37.4	1.8e-72
WP_109455947.1|1699959_1700535_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	31.9	2.1e-08
WP_109455948.1|1700569_1701214_+	ankyrin repeat domain-containing protein	NA	A0A2K9L931	Tupanvirus	30.3	2.3e-08
WP_064612560.1|1701261_1701810_+	hypothetical protein	NA	NA	NA	NA	NA
WP_045917470.1|1701813_1702623_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	26.7	2.4e-18
WP_080943646.1|1702996_1703374_+	hypothetical protein	NA	NA	NA	NA	NA
WP_052694805.1|1703438_1704140_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_109234476.1|1704154_1704823_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_109456107.1|1705135_1705615_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_109456108.1|1706102_1706570_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_109455949.1|1706588_1707083_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_109455950.1|1707124_1707712_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	31.0	2.2e-05
WP_109455951.1|1707833_1708916_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.9	6.7e-85
WP_109455952.1|1708983_1709439_-	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_109455953.1|1709735_1712585_+	AAA family ATPase	NA	A0A2P0VMS9	Tetraselmis_virus	24.2	2.7e-08
WP_109456065.1|1714429_1715524_+	toprim domain-containing protein	NA	NA	NA	NA	NA
WP_109455954.1|1715575_1716559_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
WP_109455955.1|1716568_1717816_-	Flp pilus assembly complex ATPase component TadA	NA	NA	NA	NA	NA
WP_109455956.1|1717817_1718324_-	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_045917742.1|1718329_1719478_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_109455957.1|1719490_1722118_-	conjugal transfer protein TraG N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_045916164.1|1722117_1723419_-	conjugal transfer protein TraH	NA	NA	NA	NA	NA
WP_109455841.1|1723415_1724114_-	conjugal transfer protein TraF	NA	NA	NA	NA	NA
WP_109455958.1|1724110_1725802_-	conjugal transfer protein TraN	NA	NA	NA	NA	NA
WP_109455668.1|1725798_1726182_-	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
WP_174191437.1|1726204_1727182_-	TraU family protein	NA	NA	NA	NA	NA
WP_174190469.1|1727182_1727356_-	hypothetical protein	NA	NA	NA	NA	NA
WP_109455959.1|1727439_1728099_-	type-F conjugative transfer system protein TraW	NA	NA	NA	NA	NA
WP_109455960.1|1728095_1730585_-	TraC family protein	NA	NA	NA	NA	NA
WP_109455961.1|1730565_1730886_-	conjugal transfer protein	NA	NA	NA	NA	NA
WP_109455962.1|1730885_1732214_-	conjugal transfer protein	NA	NA	NA	NA	NA
WP_081420566.1|1732252_1732588_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064612632.1|1733084_1733573_-	hypothetical protein	NA	NA	NA	NA	NA
WP_045912835.1|1733569_1734121_-	conjugal transfer protein	NA	NA	NA	NA	NA
WP_045918854.1|1734120_1734456_-	hypothetical protein	NA	NA	NA	NA	NA
WP_052694720.1|1734511_1735831_-|integrase	site-specific integrase	integrase	Q9T1R0	Acyrthosiphon_pisum_secondary_endosymbiont_phage	26.4	4.0e-15
WP_045916238.1|1738063_1738903_+	hypothetical protein	NA	A0A1V0SE83	Indivirus	30.2	2.5e-10
WP_155367758.1|1738916_1739426_+	hypothetical protein	NA	NA	NA	NA	NA
WP_052697951.1|1739585_1739807_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_109455963.1|1739820_1740689_-|transposase	IS630 family transposase	transposase	A0A2H4UV16	Bodo_saltans_virus	33.8	1.6e-20
1750484:1750504	attR	TAGGATTTACAAATCTTCCAA	NA	NA	NA	NA
>prophage 13
NZ_LS398550	Orientia tsutsugamushi isolate Kato chromosome I	2319449	1744357	1942422	2319449	integrase,transposase,tRNA	Moraxella_phage(14.81%)	119	1756073:1756132	1955848:1955875
WP_109455729.1|1744357_1744918_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
WP_109455964.1|1746108_1746570_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_109455965.1|1746579_1747647_-	type IV secretion system DNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_109455966.1|1747652_1748171_-	Flp pilus assembly complex ATPase component TadA	NA	NA	NA	NA	NA
WP_109455884.1|1749226_1749418_-	conjugal transfer protein TraF	NA	NA	NA	NA	NA
WP_109455968.1|1750489_1750759_-	conjugal transfer protein	NA	NA	NA	NA	NA
WP_045915079.1|1752951_1753281_-	hypothetical protein	NA	NA	NA	NA	NA
WP_109490213.1|1753280_1753463_-	conjugal transfer protein TraB	NA	NA	NA	NA	NA
WP_041621637.1|1753807_1754143_-	hypothetical protein	NA	NA	NA	NA	NA
WP_109455801.1|1754449_1755589_-	reverse transcriptase	NA	NA	NA	NA	NA
1756073:1756132	attL	CTACTATAATGTTTAAATTAGCTAAACATCTTCAAACACAGATTTTACCTACAATAATTA	NA	NA	NA	NA
WP_011944947.1|1760309_1760672_-	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
1756073:1756132	attL	CTACTATAATGTTTAAATTAGCTAAACATCTTCAAACACAGATTTTACCTACAATAATTA	NA	NA	NA	NA
WP_045915875.1|1760702_1763246_-	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	27.1	4.7e-28
WP_045915876.1|1763495_1764998_-	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
WP_012461262.1|1765016_1765499_-	ribosome maturation factor RimP	NA	NA	NA	NA	NA
WP_045915877.1|1766036_1766810_+	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA	NA
WP_045915878.1|1766806_1768195_+	2-polyprenylphenol 6-hydroxylase	NA	A0A0R6PKQ6	Moraxella_phage	25.9	5.0e-32
WP_109455969.1|1768276_1769098_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_109455970.1|1771103_1773923_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_080503914.1|1777170_1777314_+	hypothetical protein	NA	NA	NA	NA	NA
WP_045915891.1|1777485_1779348_-	heme lyase CcmF/NrfE family subunit	NA	NA	NA	NA	NA
WP_045915892.1|1779337_1780606_-	DUF21 domain-containing protein	NA	NA	NA	NA	NA
WP_155367740.1|1781866_1782037_+	hypothetical protein	NA	NA	NA	NA	NA
WP_045915893.1|1782136_1782778_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	30.7	4.2e-26
WP_045915894.1|1782818_1785710_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_045915895.1|1785709_1786987_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_045915896.1|1786992_1788471_+	hypothetical protein	NA	NA	NA	NA	NA
WP_045915897.1|1788759_1790061_+	MFS transporter	NA	Q6JIH2	Burkholderia_virus	27.5	8.5e-34
WP_045915898.1|1790127_1790466_+	YraN family protein	NA	NA	NA	NA	NA
WP_045915899.1|1790855_1791680_-	cytochrome c oxidase subunit 3	NA	NA	NA	NA	NA
WP_045915900.1|1791861_1792839_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.1e-05
WP_045913430.1|1792838_1793456_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_045915901.1|1793700_1795836_-	hypothetical protein	NA	NA	NA	NA	NA
WP_045915902.1|1796229_1797429_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_045915903.1|1797830_1798010_+	hypothetical protein	NA	NA	NA	NA	NA
WP_109455971.1|1798070_1798484_+|transposase	transposase	transposase	A0A2H4UV16	Bodo_saltans_virus	28.5	1.3e-07
WP_109455972.1|1798902_1802340_+	response regulator	NA	Q8QKV7	Ectocarpus_siliculosus_virus	22.3	1.7e-09
WP_109455973.1|1802937_1804179_+|integrase	site-specific integrase	integrase	A0A0R6PHM8	Moraxella_phage	24.5	6.0e-21
WP_041621637.1|1804302_1804638_+	hypothetical protein	NA	NA	NA	NA	NA
1804239:1804357	attR	TAATTATTGTAGGTAAAATCTGTGTTTGAAGATGTTTAGCTAATTTAAACATTATAGTAGCAGAATGAGAAATCTCATGCTACAATTGCGGCTAAAGGTGATTATGCAAAATCAAAAAT	NA	NA	NA	NA
WP_080503920.1|1804984_1805167_+	conjugal transfer protein TraB	NA	NA	NA	NA	NA
1804239:1804357	attR	TAATTATTGTAGGTAAAATCTGTGTTTGAAGATGTTTAGCTAATTTAAACATTATAGTAGCAGAATGAGAAATCTCATGCTACAATTGCGGCTAAAGGTGATTATGCAAAATCAAAAAT	NA	NA	NA	NA
WP_012461365.1|1806663_1807653_-	ankyrin repeat domain-containing protein	NA	A0A0M3ZHR3	Turkeypox_virus	30.2	3.3e-14
WP_109455974.1|1812560_1813136_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A292GI44	Xanthomonas_phage	28.8	7.9e-08
WP_045915794.1|1814222_1815848_+	repeat-containing protein D	NA	NA	NA	NA	NA
WP_012461375.1|1816659_1817325_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	40.2	4.2e-13
WP_012461376.1|1818334_1819201_+	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_045915790.1|1819864_1820653_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_045915789.1|1820664_1822200_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SEZ7	Hokovirus	39.4	1.0e-94
WP_045915788.1|1822386_1824327_+	primosomal protein N'	NA	NA	NA	NA	NA
WP_012461380.1|1824642_1824930_+	type IV secretion system protein VirB3	NA	NA	NA	NA	NA
WP_012461381.1|1824940_1827358_+	VirB4 family type IV secretion/conjugal transfer ATPase	NA	NA	NA	NA	NA
WP_045915787.1|1827357_1829805_+	type IV secretion system protein	NA	NA	NA	NA	NA
WP_045915786.1|1829826_1833708_+	type IV secretion system protein	NA	NA	NA	NA	NA
WP_045915785.1|1833761_1837034_+	type IV secretion system protein	NA	NA	NA	NA	NA
WP_045915784.1|1837026_1839591_+	type IV secretion system protein	NA	NA	NA	NA	NA
WP_045915783.1|1839627_1840881_+	MFS transporter	NA	NA	NA	NA	NA
WP_045915782.1|1840908_1842951_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	36.4	1.0e-97
WP_045915793.1|1843131_1844478_+|tRNA	glutamate--tRNA ligase	tRNA	A0A2K9L594	Tupanvirus	35.7	2.0e-09
WP_045915781.1|1844542_1845979_+|tRNA	cysteine--tRNA ligase	tRNA	H2EDD6	Moumouvirus	33.1	5.0e-51
WP_045916272.1|1848304_1848982_+	DUF2659 family protein	NA	NA	NA	NA	NA
WP_109455975.1|1849035_1850394_+	PQQ-like beta-propeller repeat protein	NA	NA	NA	NA	NA
WP_174191438.1|1850794_1851322_-|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_012461396.1|1852389_1852560_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_012461397.1|1852568_1852892_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_080943569.1|1854165_1854339_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_045915985.1|1856815_1857181_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_012461401.1|1857200_1857407_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_045914198.1|1857851_1859744_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	30.9	2.1e-89
WP_045915986.1|1859908_1861075_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_045915987.1|1861226_1862696_+	trigger factor	NA	NA	NA	NA	NA
WP_045915989.1|1863218_1864889_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	29.0	5.2e-44
WP_045915990.1|1864997_1865747_-	winged helix-turn-helix domain-containing protein	NA	W8CYM9	Bacillus_phage	27.5	1.2e-11
WP_012461407.1|1866039_1866396_+	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_041621791.1|1866477_1866750_+	30S ribosomal protein S18	NA	NA	NA	NA	NA
WP_012461409.1|1866792_1867308_+	50S ribosomal protein L9	NA	NA	NA	NA	NA
WP_012461410.1|1867474_1868950_+	NTP/NDP exchange transporter	NA	NA	NA	NA	NA
WP_012461412.1|1870794_1871220_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A0R6PGY7	Moraxella_phage	27.1	1.2e-05
WP_012461415.1|1874788_1876132_+	DUF2748 family protein	NA	NA	NA	NA	NA
WP_012461416.1|1876365_1877475_-|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_045915699.1|1884491_1885964_-	2-hydroxyacid dehydrogenase	NA	NA	NA	NA	NA
WP_045915700.1|1885973_1887464_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_080943541.1|1887456_1887858_-	cation:proton antiporter subunit C	NA	NA	NA	NA	NA
WP_012461428.1|1887835_1888270_-	Na(+)/H(+) antiporter subunit B	NA	NA	NA	NA	NA
WP_012461429.1|1888290_1888881_-	DUF4040 domain-containing protein	NA	NA	NA	NA	NA
WP_012461430.1|1888877_1889207_-	monovalent cation/H(+) antiporter subunit G	NA	NA	NA	NA	NA
WP_045915701.1|1889759_1890620_-	TIGR01459 family HAD-type hydrolase	NA	NA	NA	NA	NA
WP_174191439.1|1890752_1893158_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.0	1.6e-110
WP_045915703.1|1893197_1893722_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012461434.1|1894027_1895446_+	amino acid permease	NA	NA	NA	NA	NA
WP_045915705.1|1898356_1900060_+	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_012461437.1|1900056_1900680_+	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA	NA
WP_012461438.1|1900627_1901569_+	acetylglutamate kinase	NA	NA	NA	NA	NA
WP_045915974.1|1903079_1905929_-	cell surface protein	NA	NA	NA	NA	NA
WP_012461442.1|1906062_1906728_-	guanylate kinase	NA	A0A223FN12	Murmansk_poxvirus	31.2	6.5e-14
WP_045915975.1|1906936_1907710_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080943566.1|1908102_1908186_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_045915976.1|1908472_1908829_-	divalent-cation tolerance protein CutA	NA	NA	NA	NA	NA
WP_045915977.1|1908886_1910239_-	signal recognition particle protein	NA	D6PHS7	uncultured_phage	26.8	3.9e-05
WP_011944757.1|1911334_1911616_-	ETC complex I subunit	NA	NA	NA	NA	NA
WP_011944758.1|1911669_1911909_+	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_162563045.1|1913796_1913934_-	hypothetical protein	NA	NA	NA	NA	NA
WP_109455978.1|1914021_1914219_-	hypothetical protein	NA	NA	NA	NA	NA
WP_045915978.1|1916138_1916816_+	histidine phosphotransferase	NA	NA	NA	NA	NA
WP_174191455.1|1916885_1918280_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_045915980.1|1918446_1919925_-	MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	29.1	7.2e-37
WP_162563046.1|1921069_1921204_+	hypothetical protein	NA	NA	NA	NA	NA
WP_045915981.1|1923172_1924648_-	ankyrin repeat domain-containing protein	NA	A0A1V0QG14	Shearwaterpox_virus	25.8	5.0e-06
WP_174191456.1|1926144_1926888_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_162563027.1|1927337_1928390_-	conjugal transfer protein TraG N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_109455979.1|1929689_1930406_-	conjugal transfer protein TraF	NA	NA	NA	NA	NA
WP_109455980.1|1930521_1930980_-	DUF4065 domain-containing protein	NA	I6R0L8	Salmonella_phage	40.1	1.4e-23
WP_109455981.1|1931089_1932085_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_109455982.1|1933046_1933496_+	DUF4102 domain-containing protein	NA	B7SYF8	Stenotrophomonas_phage	32.6	1.7e-05
WP_174191440.1|1933673_1933904_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_174191441.1|1933872_1934244_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A0R6PGY7	Moraxella_phage	34.2	3.5e-09
WP_109455983.1|1934843_1935983_+	reverse transcriptase	NA	NA	NA	NA	NA
WP_109455984.1|1937422_1937797_+	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_109455985.1|1937798_1939046_+	Flp pilus assembly complex ATPase component TadA	NA	NA	NA	NA	NA
WP_109455964.1|1939055_1939517_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_109455986.1|1940996_1941893_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_109455930.1|1941882_1942422_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
1955848:1955875	attR	TTTTTCCTTATCCTAATCTGGCGTTTAT	NA	NA	NA	NA
>prophage 14
NZ_LS398550	Orientia tsutsugamushi isolate Kato chromosome I	2319449	1951520	2028296	2319449	protease,integrase,transposase,tRNA	Bacillus_phage(15.38%)	58	1940717:1940744	1980910:1980937
1940717:1940744	attL	TTTTATAAAATTATTATTTCTTTTCTTG	NA	NA	NA	NA
WP_109455994.1|1951520_1952396_-|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_045916364.1|1952503_1953670_-	hypothetical protein	NA	NA	NA	NA	NA
WP_109455612.1|1953688_1954945_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_109455995.1|1956844_1958617_-	aminopeptidase P family protein	NA	A0A0P0I8D7	Acinetobacter_phage	35.6	1.6e-96
WP_045916052.1|1958613_1960713_-	NAD-dependent DNA ligase LigA	NA	A0A1W6DX16	Sphingobium_phage	36.1	2.2e-100
WP_173024090.1|1960776_1961238_-	nucleoside deaminase	NA	NA	NA	NA	NA
WP_012462319.1|1961299_1962217_-	cation diffusion facilitator family transporter	NA	NA	NA	NA	NA
WP_045916053.1|1962495_1963293_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_011945017.1|1964438_1964987_-	NifU family protein	NA	Q58MC7	Prochlorococcus_phage	37.8	2.7e-05
WP_045916054.1|1965024_1965378_-	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_012462322.1|1965454_1966093_+	endonuclease III	NA	NA	NA	NA	NA
WP_045916055.1|1966089_1966722_+	esterase	NA	NA	NA	NA	NA
WP_045916056.1|1967041_1970515_+	acyl-[ACP]--phospholipid O-acyltransferase	NA	Q75ZG1	Hepacivirus	23.4	3.5e-18
WP_012462325.1|1971410_1971782_-	DNA helicase	NA	A0A218KST2	Xenohaliotis_phage	47.9	1.9e-18
WP_012462327.1|1972750_1973491_-	ribonuclease III	NA	A0A0P0YM82	Yellowstone_lake_phycodnavirus	34.1	1.0e-23
WP_012462328.1|1973545_1974286_-	signal peptidase I	NA	NA	NA	NA	NA
WP_109455997.1|1974843_1975326_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_158296904.1|1975728_1975905_+	hypothetical protein	NA	NA	NA	NA	NA
WP_162563047.1|1975907_1976018_+	DUF4102 domain-containing protein	NA	NA	NA	NA	NA
WP_109455998.1|1976138_1976951_+|integrase	site-specific integrase	integrase	B6SD77	Bacteriophage	28.8	1.1e-15
WP_041621637.1|1977074_1977410_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080503920.1|1977756_1977939_+	conjugal transfer protein TraB	NA	NA	NA	NA	NA
WP_109455999.1|1978891_1979701_-	PRANC domain-containing protein	NA	A0A1V0QGP6	Shearwaterpox_virus	27.9	2.2e-11
WP_155367736.1|1980267_1980411_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011944475.1|1982967_1983093_-	50S ribosomal protein L36	NA	NA	NA	NA	NA
1980910:1980937	attR	TTTTATAAAATTATTATTTCTTTTCTTG	NA	NA	NA	NA
WP_012460755.1|1984180_1984507_-	thioredoxin	NA	A0A1J0GW78	Streptomyces_phage	45.5	5.8e-16
WP_045915814.1|1984529_1986848_-	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_012460753.1|1986860_1987922_-|protease	site-2 protease family protein	protease	NA	NA	NA	NA
WP_052697890.1|1988031_1989381_-	DNA recombination protein RmuC	NA	NA	NA	NA	NA
WP_045915813.1|1989441_1990263_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_045915812.1|1990391_1991267_-	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_012460749.1|1991449_1991758_-	HU family DNA-binding protein	NA	NA	NA	NA	NA
WP_012460748.1|1992293_1993190_-	zinc ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_012460747.1|1993186_1994395_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	K4JS34	Caulobacter_phage	30.9	6.1e-34
WP_012460746.1|1994447_1995647_-	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA	NA
WP_045915811.1|1995824_1999292_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	24.6	1.8e-06
WP_011944487.1|1999304_1999796_-	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_045914331.1|1999859_2000711_-	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA	NA
WP_052697888.1|2000717_2001521_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_080943553.1|2001946_2002474_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_045912408.1|2002753_2002960_-	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_011944492.1|2003056_2003422_+	membrane protein	NA	NA	NA	NA	NA
WP_045915810.1|2003789_2004710_-	GTPase Era	NA	NA	NA	NA	NA
WP_045912406.1|2004706_2005729_-	FKBP-type peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_045915809.1|2005933_2007013_-	peptide chain release factor 1	NA	NA	NA	NA	NA
WP_045915972.1|2008246_2008948_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	tRNA	NA	NA	NA	NA
WP_012460733.1|2008967_2009753_-	extragenic suppressor protein SuhB	NA	NA	NA	NA	NA
WP_012460732.1|2009749_2010319_-	elongation factor P	NA	NA	NA	NA	NA
WP_012460731.1|2010523_2011777_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.6	2.0e-120
WP_045915971.1|2012004_2013306_-|tRNA	proline--tRNA ligase	tRNA	NA	NA	NA	NA
WP_012460729.1|2013319_2013613_-	hypothetical protein	NA	NA	NA	NA	NA
WP_045915970.1|2013626_2014847_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_045915969.1|2014927_2015944_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_045915968.1|2016218_2018672_+	virB4 protein precursor	NA	NA	NA	NA	NA
WP_045915967.1|2018671_2023192_+	hypothetical protein	NA	NA	NA	NA	NA
WP_045915966.1|2025434_2027171_-	ATP-binding cassette domain-containing protein	NA	W8CYL7	Bacillus_phage	25.8	3.3e-41
WP_012462339.1|2027154_2027487_-	iron donor protein CyaY	NA	NA	NA	NA	NA
WP_080943565.1|2028077_2028296_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_LS398550	Orientia tsutsugamushi isolate Kato chromosome I	2319449	2162406	2169297	2319449		Tupanvirus(50.0%)	8	NA	NA
WP_109456026.1|2162406_2163114_-	ankyrin repeat domain-containing protein	NA	A0A2K9L931	Tupanvirus	32.8	3.8e-12
WP_109456027.1|2163151_2163727_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2K9LAT2	Tupanvirus	31.9	7.9e-08
WP_109456117.1|2164320_2164998_+	hypothetical protein	NA	NA	NA	NA	NA
WP_109455946.1|2165006_2166443_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	37.4	1.8e-72
WP_109456028.1|2166675_2167251_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	31.9	2.1e-08
WP_064612913.1|2167285_2167930_+	ankyrin repeat domain-containing protein	NA	A0A2K9L931	Tupanvirus	33.0	1.7e-14
WP_109455700.1|2167977_2168484_+	hypothetical protein	NA	NA	NA	NA	NA
WP_109456029.1|2168487_2169297_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	29.5	1.0e-21
>prophage 16
NZ_LS398550	Orientia tsutsugamushi isolate Kato chromosome I	2319449	2174620	2240893	2319449	integrase,transposase	Pseudomonas_phage(16.67%)	37	2219449:2219471	2255260:2255282
WP_109456031.1|2174620_2175607_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.1	1.4e-84
WP_080943640.1|2176650_2178060_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_109456032.1|2178261_2178717_-	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_109455581.1|2178926_2180642_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	36.5	2.8e-85
WP_109456033.1|2181341_2184164_+	AAA family ATPase	NA	A0A2P0VMS9	Tetraselmis_virus	24.1	1.3e-07
WP_109456034.1|2185771_2186638_+|transposase	IS630 family transposase	transposase	A0A2H4UV16	Bodo_saltans_virus	28.8	5.5e-21
WP_109456118.1|2187496_2188591_+	toprim domain-containing protein	NA	NA	NA	NA	NA
WP_109456035.1|2188642_2189602_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
WP_109456036.1|2189611_2191366_-	type IV secretion system DNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_109456037.1|2192501_2195120_-	conjugal transfer protein TraG	NA	NA	NA	NA	NA
WP_045916426.1|2197160_2197691_-	DUF4065 domain-containing protein	NA	I6R0L8	Salmonella_phage	38.2	1.6e-15
WP_109456038.1|2198552_2199449_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_109456039.1|2199702_2201391_-	conjugal transfer protein TraN	NA	NA	NA	NA	NA
WP_109456040.1|2201387_2201771_-	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
WP_045915815.1|2202760_2203765_+	ankyrin repeat domain-containing protein	NA	A0A1V0QGP6	Shearwaterpox_virus	29.6	1.9e-09
WP_109456041.1|2203663_2205466_-	TraC family protein	NA	NA	NA	NA	NA
WP_109455712.1|2205446_2205776_-	conjugal transfer protein	NA	NA	NA	NA	NA
WP_109455713.1|2205775_2207098_-	conjugal transfer protein	NA	NA	NA	NA	NA
WP_045916306.1|2207907_2208384_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012460929.1|2208932_2209268_-	hypothetical protein	NA	NA	NA	NA	NA
WP_109455848.1|2209388_2210588_-|integrase	site-specific integrase	integrase	A0A0R6PGY7	Moraxella_phage	25.9	2.1e-26
WP_109456042.1|2211987_2213166_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	35.1	4.8e-52
WP_109456119.1|2213169_2213223_+	hypothetical protein	NA	NA	NA	NA	NA
WP_109456043.1|2213389_2215099_+	hypothetical protein	NA	NA	NA	NA	NA
WP_045916338.1|2215477_2216053_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2K9LAT2	Tupanvirus	29.6	4.3e-06
WP_109455702.1|2216090_2216735_+	ankyrin repeat domain-containing protein	NA	A0A2K9L931	Tupanvirus	33.0	8.2e-14
WP_162563026.1|2216781_2216955_+	hypothetical protein	NA	NA	NA	NA	NA
WP_109456044.1|2217252_2218392_-	reverse transcriptase	NA	NA	NA	NA	NA
2219449:2219471	attL	TGTTTTATAGTAGTTTAGCTATA	NA	NA	NA	NA
WP_045916271.1|2222262_2223417_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_012462127.1|2224439_2225075_+	Tim44 domain-containing protein	NA	NA	NA	NA	NA
WP_174191457.1|2225188_2225935_+	rhodanese domain-containing protein	NA	NA	NA	NA	NA
WP_109456045.1|2227809_2229009_+|integrase	site-specific integrase	integrase	A0A0R6PGY7	Moraxella_phage	25.9	2.1e-26
WP_109456046.1|2231527_2232073_-	hypothetical protein	NA	NA	NA	NA	NA
WP_109456047.1|2232161_2232617_-	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_109455581.1|2232826_2234542_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	36.5	2.8e-85
WP_109456048.1|2235239_2239322_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_109456049.1|2240002_2240893_+|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	NA	NA	NA	NA
2255260:2255282	attR	TATAGCTAAACTACTATAAAACA	NA	NA	NA	NA
