assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900327265.1_Kato	NZ_LS398550	Orientia tsutsugamushi isolate Kato chromosome I	1	29076-29170	1	CRISPRCasFinder	no	RT	RT,DEDDh	Unclear	CTTCAGCTTTACCTTCGGCTTTA	23	1	1	29099-29147	NZ_LS398550.1_808301-808349	NA	1	1	Orphan	RT,DEDDh	NA|600aa|up_7|NZ_LS398550.1_9475_11275_+,NA|183aa|down_4|NZ_LS398550.1_35469_36018_+	NA|330aa|up_9|NZ_LS398550.1_5598_6588_+	PRK13900, PRK13900, type IV secretion system ATPase VirB11; Provisional	NA|591aa|up_8|NZ_LS398550.1_6587_8360_+	PRK13897, PRK13897, type IV secretion system component VirD4; Provisional	NA|600aa|up_7|NZ_LS398550.1_9475_11275_+	NA	RT|380aa|up_6|NZ_LS398550.1_12084_13224_+	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|382aa|up_5|NZ_LS398550.1_17599_18745_+	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|585aa|up_4|NZ_LS398550.1_18750_20505_+	pfam10412, TrwB_AAD_bind, Type IV secretion-system coupling protein DNA-binding domain	NA|336aa|up_3|NZ_LS398550.1_20514_21522_-	pfam04754, Transposase_31, Putative transposase, YhgA-like	NA|378aa|up_2|NZ_LS398550.1_21543_22677_-	TIGR02760, conjugative_transfer_relaxase_protein_TraI, conjugative transfer relaxase protein TraI	RT|572aa|up_1|NZ_LS398550.1_26511_28227_+	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|133aa|up_0|NZ_LS398550.1_28493_28892_+	pfam06412, TraD, Conjugal transfer protein TraD	NA|571aa|down_0|NZ_LS398550.1_30764_32477_+	pfam11638, DnaA_N, DnaA N-terminal domain	NA|483aa|down_1|NZ_LS398550.1_32485_33934_+	PRK09165, PRK09165, replicative DNA helicase; Provisional	NA|192aa|down_2|NZ_LS398550.1_34167_34743_+	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|215aa|down_3|NZ_LS398550.1_34777_35422_+	sd00045, ANK, ankyrin repeats	NA|183aa|down_4|NZ_LS398550.1_35469_36018_+	NA	NA|270aa|down_5|NZ_LS398550.1_36021_36831_-	TIGR00571, DNA_adenine_methylase, DNA adenine methylase (dam)	NA|243aa|down_6|NZ_LS398550.1_37204_37933_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|286aa|down_7|NZ_LS398550.1_37954_38812_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|192aa|down_8|NZ_LS398550.1_38912_39488_+	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|179aa|down_9|NZ_LS398550.1_39514_40051_-	pfam06153, CdAMP_rec, Cyclic-di-AMP receptor
GCF_900327265.1_Kato	NZ_LS398550	Orientia tsutsugamushi isolate Kato chromosome I	2	497000-497094	2	CRISPRCasFinder	no		RT,DEDDh	Orphan	CTTCAGCTTTACCTTCGGCTTTA	23	1	2	497023-497071|497023-497071	NZ_LS398550.1_808301-808349|NZ_LS398550.1_1548848-1548896	NA	1	1	Orphan	RT,DEDDh	NA,NA|169aa|down_2|NZ_LS398550.1_504754_505261_-	NA|588aa|up_9|NZ_LS398550.1_480208_481972_+	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|252aa|up_8|NZ_LS398550.1_482296_483052_-	COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|263aa|up_7|NZ_LS398550.1_483080_483869_-	pfam02405, MlaE, Permease MlaE	NA|264aa|up_6|NZ_LS398550.1_483986_484778_-	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional	NA|208aa|up_5|NZ_LS398550.1_484904_485528_+	PRK05327, rpsD, 30S ribosomal protein S4; Validated	NA|56aa|up_4|NZ_LS398550.1_486149_486317_+	pfam06834, TraU, TraU protein	NA|512aa|up_3|NZ_LS398550.1_487853_489389_+	pfam10412, TrwB_AAD_bind, Type IV secretion-system coupling protein DNA-binding domain	NA|328aa|up_2|NZ_LS398550.1_489398_490382_-	pfam04754, Transposase_31, Putative transposase, YhgA-like	NA|365aa|up_1|NZ_LS398550.1_490433_491528_-	TIGR02760, conjugative_transfer_relaxase_protein_TraI, conjugative transfer relaxase protein TraI	NA|152aa|up_0|NZ_LS398550.1_496355_496811_+	pfam06412, TraD, Conjugal transfer protein TraD	NA|193aa|down_0|NZ_LS398550.1_497952_498531_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|660aa|down_1|NZ_LS398550.1_501192_503172_+	sd00045, ANK, ankyrin repeats	NA|169aa|down_2|NZ_LS398550.1_504754_505261_-	NA	NA|215aa|down_3|NZ_LS398550.1_505308_505953_-	sd00045, ANK, ankyrin repeats	NA|192aa|down_4|NZ_LS398550.1_505987_506563_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|606aa|down_5|NZ_LS398550.1_508130_509948_+	PRK09102, PRK09102, ribonucleoside-diphosphate reductase subunit alpha	NA|331aa|down_6|NZ_LS398550.1_509970_510963_+	PRK09614, nrdF, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|76aa|down_7|NZ_LS398550.1_512131_512359_+	pfam13356, Arm-DNA-bind_3, Arm DNA-binding domain	NA|353aa|down_8|NZ_LS398550.1_512528_513587_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|197aa|down_9|NZ_LS398550.1_513574_514165_+	cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C
GCF_900327265.1_Kato	NZ_LS398550	Orientia tsutsugamushi isolate Kato chromosome I	3	1880340-1880418	3	CRISPRCasFinder	no		RT,DEDDh	Orphan	CAAACTTCATTGTAATTGACTATA	24	0	0	NA	NA	NA	1	1	Orphan	RT,DEDDh	NA,NA|175aa|down_8|NZ_LS398550.1_1893197_1893722_-	NA|490aa|up_9|NZ_LS398550.1_1861226_1862696_+	TIGR00115, tig, trigger factor	NA|557aa|up_8|NZ_LS398550.1_1863218_1864889_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|250aa|up_7|NZ_LS398550.1_1864997_1865747_-	TIGR02154, PhoB, phosphate regulon transcriptional regulatory protein PhoB	NA|119aa|up_6|NZ_LS398550.1_1866039_1866396_+	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed	NA|91aa|up_5|NZ_LS398550.1_1866477_1866750_+	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed	NA|172aa|up_4|NZ_LS398550.1_1866792_1867308_+	PRK00137, rplI, 50S ribosomal protein L9; Reviewed	NA|492aa|up_3|NZ_LS398550.1_1867474_1868950_+	pfam03219, TLC, TLC ATP/ADP transporter	NA|142aa|up_2|NZ_LS398550.1_1870794_1871220_-	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain	NA|448aa|up_1|NZ_LS398550.1_1874788_1876132_+	pfam10871, DUF2748, Protein of unknown function (DUF2748)	NA|370aa|up_0|NZ_LS398550.1_1876365_1877475_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|491aa|down_0|NZ_LS398550.1_1884491_1885964_-	PRK06589, PRK06589, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|497aa|down_1|NZ_LS398550.1_1885973_1887464_-	PRK06591, PRK06591, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|134aa|down_2|NZ_LS398550.1_1887456_1887858_-	PRK07375, PRK07375, Na+/H+ antiporter subunit C	NA|145aa|down_3|NZ_LS398550.1_1887835_1888270_-	PRK12507, PRK12507, putative monovalent cation/H+ antiporter subunit B; Reviewed	NA|197aa|down_4|NZ_LS398550.1_1888290_1888881_-	PRK12507, PRK12507, putative monovalent cation/H+ antiporter subunit B; Reviewed	NA|110aa|down_5|NZ_LS398550.1_1888877_1889207_-	PRK12670, PRK12670, putative monovalent cation/H+ antiporter subunit G; Reviewed	NA|287aa|down_6|NZ_LS398550.1_1889759_1890620_-	cd07525, HAD_like, uncharacterized family of the haloacid dehalogenase-like (HAD) hydrolase superfamily	NA|802aa|down_7|NZ_LS398550.1_1890752_1893158_+	PRK14939, gyrB, DNA gyrase subunit B; Provisional	NA|175aa|down_8|NZ_LS398550.1_1893197_1893722_-	NA	NA|473aa|down_9|NZ_LS398550.1_1894027_1895446_+	TIGR00909, putative_amino_acid_transporter, amino acid transporter
