assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900474445.1_39641_B02	NZ_LS483296	Escherichia coli strain NCTC9966 chromosome 1	1	712778-712919	1	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4,RT	Orphan	GCACATGTAGGGCGGATAAGGCGTTCACGCCGCATCCGCCAG	42	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4,RT	NA,NA|357aa|down_1|NZ_LS483296.1_715297_716368_-	NA|184aa|up_9|NZ_LS483296.1_702307_702859_+	pfam10688, Imp-YgjV, Bacterial inner membrane protein	NA|415aa|up_8|NZ_LS483296.1_702863_704108_-	PRK13628, PRK13628, serine/threonine transporter SstT; Provisional	NA|322aa|up_7|NZ_LS483296.1_704723_705689_-	TIGR03718, R_switched_Alx, integral membrane protein, TerC family	NA|329aa|up_6|NZ_LS483296.1_705971_706958_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|231aa|up_5|NZ_LS483296.1_707036_707729_-	COG2949, SanA, Uncharacterized membrane protein [Function unknown]	NA|168aa|up_4|NZ_LS483296.1_707805_708309_-	COG1451, COG1451, Predicted metal-dependent hydrolase [General function prediction only]	NA|379aa|up_3|NZ_LS483296.1_708393_709530_+	PRK15001, PRK15001, 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG	NA|105aa|up_2|NZ_LS483296.1_709813_710128_+	COG4680, COG4680, Uncharacterized protein conserved in bacteria [Function unknown]	NA|139aa|up_1|NZ_LS483296.1_710124_710541_+	COG5499, COG5499, Predicted transcription regulator containing HTH domain [Transcription]	NA|673aa|up_0|NZ_LS483296.1_710585_712604_-	cd02930, DCR_FMN, 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain	NA|784aa|down_0|NZ_LS483296.1_712929_715281_-	PRK10137, PRK10137, alpha-glucosidase; Provisional	NA|357aa|down_1|NZ_LS483296.1_715297_716368_-	NA	NA|478aa|down_2|NZ_LS483296.1_716501_717935_-	PRK15238, PRK15238, inner membrane transporter YjeM; Provisional	NA|150aa|down_3|NZ_LS483296.1_717997_718447_-	PRK10202, ebgC, beta-galactosidase subunit beta	NA|1031aa|down_4|NZ_LS483296.1_718443_721536_-	PRK10340, ebgA, cryptic beta-D-galactosidase subunit alpha; Reviewed	NA|328aa|down_5|NZ_LS483296.1_721719_722703_-	PRK10339, PRK10339, DNA-binding transcriptional repressor EbgR; Provisional	NA|111aa|down_6|NZ_LS483296.1_722921_723254_+	PRK10089, PRK10089, chaperone CsaA	NA|460aa|down_7|NZ_LS483296.1_723295_724675_-	PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase; Provisional	NA|507aa|down_8|NZ_LS483296.1_725092_726613_+	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|208aa|down_9|NZ_LS483296.1_726766_727390_-	COG1695, COG1695, Predicted transcriptional regulators [Transcription]
GCF_900474445.1_39641_B02	NZ_LS483296	Escherichia coli strain NCTC9966 chromosome 1	2	1042981-1043680	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas5,cas6e,cas1,cas2	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4,RT	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	11,11,11	11	TypeI-E	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4,RT	NA,NA	NA|245aa|up_9|NZ_LS483296.1_1031631_1032366_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_8|NZ_LS483296.1_1032630_1032783_+	pfam01848, HOK_GEF, Hok/gef family	NA|371aa|up_7|NZ_LS483296.1_1032974_1034087_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	cas3|900aa|up_6|NZ_LS483296.1_1034325_1037025_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_5|NZ_LS483296.1_1037122_1038685_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|up_4|NZ_LS483296.1_1038681_1039218_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas5|249aa|up_3|NZ_LS483296.1_1040295_1041042_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_LS483296.1_1041023_1041674_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|NZ_LS483296.1_1041670_1042594_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_LS483296.1_1042590_1042884_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_LS483296.1_1043761_1044799_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_LS483296.1_1045050_1045959_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_LS483296.1_1045960_1047388_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_LS483296.1_1047387_1047993_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_LS483296.1_1048042_1048366_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_LS483296.1_1048559_1048871_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_LS483296.1_1048889_1049600_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_LS483296.1_1049599_1050079_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_LS483296.1_1050075_1051125_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_LS483296.1_1051105_1051867_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_900474445.1_39641_B02	NZ_LS483296	Escherichia coli strain NCTC9966 chromosome 1	3	1456037-1456125	3	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4,RT	Orphan	GGTTGTCCAACGGTTGTCCAACG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4,RT	NA|157aa|up_6|NZ_LS483296.1_1452698_1453169_-,NA|54aa|up_0|NZ_LS483296.1_1455504_1455666_+,NA|69aa|down_1|NZ_LS483296.1_1458044_1458251_+,NA|105aa|down_2|NZ_LS483296.1_1458268_1458583_+,NA|134aa|down_5|NZ_LS483296.1_1459368_1459770_+,NA|90aa|down_7|NZ_LS483296.1_1459931_1460201_+	NA|51aa|up_9|NZ_LS483296.1_1451255_1451408_-	pfam06301, Lambda_Kil, Bacteriophage lambda Kil protein	NA|44aa|up_8|NZ_LS483296.1_1451392_1451524_-	pfam02061, Lambda_CIII, Lambda Phage CIII	NA|323aa|up_7|NZ_LS483296.1_1451548_1452517_-	PTZ00121, PTZ00121, MAEBL; Provisional	NA|157aa|up_6|NZ_LS483296.1_1452698_1453169_-	NA	NA|46aa|up_5|NZ_LS483296.1_1453223_1453361_-	pfam17583, DUF5484, Family of unknown function (DUF5484)	NA|111aa|up_4|NZ_LS483296.1_1453369_1453702_-	pfam11438, N36, 36-mer N-terminal peptide of the N protein (N36)	NA|232aa|up_3|NZ_LS483296.1_1454084_1454780_-	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]	NA|72aa|up_2|NZ_LS483296.1_1454856_1455072_+	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|94aa|up_1|NZ_LS483296.1_1455188_1455470_+	pfam05269, Phage_CII, Bacteriophage CII protein	NA|54aa|up_0|NZ_LS483296.1_1455504_1455666_+	NA	NA|479aa|down_0|NZ_LS483296.1_1456532_1457969_+	TIGR03600, phage_DnaB, phage replicative helicase, DnaB family, HK022 subfamily	NA|69aa|down_1|NZ_LS483296.1_1458044_1458251_+	NA	NA|105aa|down_2|NZ_LS483296.1_1458268_1458583_+	NA	NA|137aa|down_3|NZ_LS483296.1_1458782_1459193_+	pfam05772, NinB, NinB protein	NA|59aa|down_4|NZ_LS483296.1_1459189_1459366_+	pfam05322, NinE, NINE Protein	NA|134aa|down_5|NZ_LS483296.1_1459368_1459770_+	NA	NA|70aa|down_6|NZ_LS483296.1_1459729_1459939_+	pfam05810, NinF, NinF protein	NA|90aa|down_7|NZ_LS483296.1_1459931_1460201_+	NA	NA|97aa|down_8|NZ_LS483296.1_1460200_1460491_+	pfam07102, DUF1364, Protein of unknown function (DUF1364)	NA|121aa|down_9|NZ_LS483296.1_1460487_1460850_+	PRK09786, PRK09786, endodeoxyribonuclease RUS; Reviewed
GCF_900474445.1_39641_B02	NZ_LS483296	Escherichia coli strain NCTC9966 chromosome 1	4	1601970-1602087	4	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4,RT	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4,RT	NA,NA	NA|62aa|up_9|NZ_LS483296.1_1591255_1591441_-	PRK09956, PRK09956, ISNCY family transposase	NA|300aa|up_8|NZ_LS483296.1_1591453_1592353_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_7|NZ_LS483296.1_1592545_1593736_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_6|NZ_LS483296.1_1593732_1594992_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_5|NZ_LS483296.1_1594981_1596610_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_4|NZ_LS483296.1_1596882_1598241_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_3|NZ_LS483296.1_1598245_1599322_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|217aa|up_2|NZ_LS483296.1_1599784_1600435_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_LS483296.1_1600488_1600743_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_LS483296.1_1600742_1601873_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_LS483296.1_1602106_1604392_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|NZ_LS483296.1_1605087_1608840_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|239aa|down_2|NZ_LS483296.1_1608971_1609688_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_LS483296.1_1609834_1612462_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NZ_LS483296.1_1612610_1614299_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_LS483296.1_1614295_1614919_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1465aa|down_6|NZ_LS483296.1_1615062_1619457_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_7|NZ_LS483296.1_1619457_1621107_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_8|NZ_LS483296.1_1621111_1621888_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_9|NZ_LS483296.1_1621961_1623146_-	PRK05790, PRK05790, putative acyltransferase; Provisional
GCF_900474445.1_39641_B02	NZ_LS483296	Escherichia coli strain NCTC9966 chromosome 1	5	2214713-2214836	5	CRISPRCasFinder	no	DEDDh	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4,RT	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4,RT	NA,NA|51aa|down_9|NZ_LS483296.1_2227015_2227168_+	NA|79aa|up_9|NZ_LS483296.1_2203621_2203858_-	PRK15396, PRK15396, major outer membrane lipoprotein	NA|471aa|up_8|NZ_LS483296.1_2204168_2205581_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_7|NZ_LS483296.1_2206137_2206347_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|701aa|up_6|NZ_LS483296.1_2207447_2209550_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_LS483296.1_2209562_2210201_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_LS483296.1_2210264_2210933_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_LS483296.1_2210929_2211715_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_LS483296.1_2211718_2212531_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_LS483296.1_2212542_2214147_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_LS483296.1_2214272_2214578_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_LS483296.1_2215150_2216407_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_LS483296.1_2216447_2217821_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_LS483296.1_2218035_2218677_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|404aa|down_3|NZ_LS483296.1_2220156_2221368_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_4|NZ_LS483296.1_2221480_2222413_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_5|NZ_LS483296.1_2222409_2223435_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|390aa|down_6|NZ_LS483296.1_2223987_2225157_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_7|NZ_LS483296.1_2225391_2225973_-	PRK10543, PRK10543, superoxide dismutase [Fe]	NA|272aa|down_8|NZ_LS483296.1_2226100_2226916_-	pfam00877, NLPC_P60, NlpC/P60 family	NA|51aa|down_9|NZ_LS483296.1_2227015_2227168_+	NA
GCF_900474445.1_39641_B02	NZ_LS483296	Escherichia coli strain NCTC9966 chromosome 1	6	2883467-2883558	6	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4,RT	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4,RT	NA,NA	NA|503aa|up_9|NZ_LS483296.1_2870876_2872385_-	PRK15419, PRK15419, sodium/proline symporter PutP	NA|1321aa|up_8|NZ_LS483296.1_2872807_2876770_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_LS483296.1_2876809_2877448_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_LS483296.1_2877735_2878827_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_LS483296.1_2878826_2879519_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_LS483296.1_2879530_2879917_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_LS483296.1_2879924_2880725_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_LS483296.1_2880734_2881325_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_LS483296.1_2881335_2881830_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_LS483296.1_2881850_2883179_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_LS483296.1_2883981_2884578_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_LS483296.1_2884598_2884826_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_LS483296.1_2884863_2886105_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|419aa|down_3|NZ_LS483296.1_2886397_2887654_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_LS483296.1_2887914_2888835_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_LS483296.1_2888834_2889140_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_LS483296.1_2889291_2889891_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_LS483296.1_2889887_2892434_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_LS483296.1_2892433_2893606_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_LS483296.1_2893735_2894428_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_900474445.1_39641_B02	NZ_LS483296	Escherichia coli strain NCTC9966 chromosome 1	7	3025440-3025645	7,2,2	CRISPRCasFinder,CRT,PILER-CR	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4,RT	Orphan	TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAACG	28,28,29	0	0	NA	NA	I-F:I-F:I-F	3,3,2	3	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4,RT	NA,NA	NA|431aa|up_9|NZ_LS483296.1_3010563_3011856_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_8|NZ_LS483296.1_3011946_3013290_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_7|NZ_LS483296.1_3013300_3013912_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1330aa|up_6|NZ_LS483296.1_3014066_3018056_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|NZ_LS483296.1_3018190_3018685_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_4|NZ_LS483296.1_3019229_3020195_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|NZ_LS483296.1_3020317_3022084_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|NZ_LS483296.1_3022084_3023806_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|NZ_LS483296.1_3023847_3024552_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|NZ_LS483296.1_3024836_3025055_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|759aa|down_0|NZ_LS483296.1_3025855_3028132_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|NZ_LS483296.1_3028162_3028483_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_2|NZ_LS483296.1_3028805_3029030_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_3|NZ_LS483296.1_3029102_3031049_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_4|NZ_LS483296.1_3031045_3032161_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|319aa|down_5|NZ_LS483296.1_3032311_3033268_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_6|NZ_LS483296.1_3033264_3034923_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|232aa|down_7|NZ_LS483296.1_3035347_3036043_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|300aa|down_8|NZ_LS483296.1_3036537_3037437_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|551aa|down_9|NZ_LS483296.1_3037580_3039233_+	PRK05290, PRK05290, hybrid cluster protein; Provisional
GCF_900474445.1_39641_B02	NZ_LS483296	Escherichia coli strain NCTC9966 chromosome 1	8	3223870-3224014	8	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4,RT	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4,RT	NA|119aa|up_9|NZ_LS483296.1_3215276_3215633_-,NA|36aa|up_7|NZ_LS483296.1_3218111_3218219_-,NA|101aa|up_5|NZ_LS483296.1_3218710_3219013_-,NA|52aa|up_3|NZ_LS483296.1_3220924_3221080_+,NA	NA|119aa|up_9|NZ_LS483296.1_3215276_3215633_-	NA	NA|108aa|up_8|NZ_LS483296.1_3216094_3216418_-	pfam10548, P22_AR_C, P22AR C-terminal domain	NA|36aa|up_7|NZ_LS483296.1_3218111_3218219_-	NA	NA|111aa|up_6|NZ_LS483296.1_3218310_3218643_-	PRK09541, emrE, EmrE family multidrug efflux SMR transporter	NA|101aa|up_5|NZ_LS483296.1_3218710_3219013_-	NA	NA|234aa|up_4|NZ_LS483296.1_3219009_3219711_-	pfam06992, Phage_lambda_P, Replication protein P	NA|52aa|up_3|NZ_LS483296.1_3220924_3221080_+	NA	NA|73aa|up_2|NZ_LS483296.1_3221119_3221338_+	pfam07825, Exc, Excisionase-like protein	NA|357aa|up_1|NZ_LS483296.1_3221315_3222386_+	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase	NA|428aa|up_0|NZ_LS483296.1_3222520_3223804_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_LS483296.1_3224037_3226299_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_LS483296.1_3226481_3227915_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_LS483296.1_3227990_3229043_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_LS483296.1_3229226_3230180_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_LS483296.1_3230220_3231216_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_LS483296.1_3231370_3232189_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_LS483296.1_3232189_3233248_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_LS483296.1_3233250_3233940_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_LS483296.1_3233939_3234713_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NZ_LS483296.1_3234879_3235029_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_900474445.1_39641_B02	NZ_LS483296	Escherichia coli strain NCTC9966 chromosome 1	9	3456851-3456947	9	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4,RT	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4,RT	NA,NA	NA|231aa|up_9|NZ_LS483296.1_3448646_3449339_-	PRK15195, PRK15195, molecular chaperone FimC	NA|181aa|up_8|NZ_LS483296.1_3449558_3450101_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|289aa|up_7|NZ_LS483296.1_3450571_3451438_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|NZ_LS483296.1_3451439_3451652_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|NZ_LS483296.1_3451759_3452281_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|NZ_LS483296.1_3452316_3453702_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|NZ_LS483296.1_3453875_3454370_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|NZ_LS483296.1_3454372_3455095_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|NZ_LS483296.1_3455212_3455722_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|NZ_LS483296.1_3455718_3456786_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|NZ_LS483296.1_3456980_3457874_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|NZ_LS483296.1_3457870_3458686_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|NZ_LS483296.1_3458696_3459956_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|259aa|down_3|NZ_LS483296.1_3460964_3461741_+	PRK09997, PRK09997, hydroxypyruvate isomerase; Provisional	NA|293aa|down_4|NZ_LS483296.1_3461840_3462719_+	PRK15059, PRK15059, 2-hydroxy-3-oxopropionate reductase	NA|485aa|down_5|NZ_LS483296.1_3462887_3464342_+	PRK11375, PRK11375, putative allantoin permease	NA|454aa|down_6|NZ_LS483296.1_3464401_3465763_+	PRK08044, PRK08044, allantoinase AllB	NA|434aa|down_7|NZ_LS483296.1_3465819_3467121_+	PRK11412, PRK11412, uracil/xanthine transporter	NA|382aa|down_8|NZ_LS483296.1_3467142_3468288_+	PRK09932, PRK09932, glycerate 3-kinase	NA|272aa|down_9|NZ_LS483296.1_3470870_3471686_-	PRK10163, PRK10163, HTH-type transcriptional repressor AllR
GCF_900474445.1_39641_B02	NZ_LS483296	Escherichia coli strain NCTC9966 chromosome 1	10	3719387-3719483	10	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4,RT	Orphan	GCCAGCGTCGCATCAGGCATCCGCGCA	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4,RT	NA,NA|59aa|down_9|NZ_LS483296.1_3729148_3729325_-	NA|153aa|up_9|NZ_LS483296.1_3711264_3711723_-	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated	NA|486aa|up_8|NZ_LS483296.1_3711983_3713441_+	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional	NA|186aa|up_7|NZ_LS483296.1_3713497_3714055_-	PRK08179, prfH, peptide chain release factor-like protein; Reviewed	NA|89aa|up_6|NZ_LS483296.1_3713966_3714233_-	PRK09588, PRK09588, hypothetical protein; Reviewed	NA|151aa|up_5|NZ_LS483296.1_3714467_3714920_-	PRK09831, PRK09831, GNAT family N-acetyltransferase	NA|133aa|up_4|NZ_LS483296.1_3714929_3715328_-	PRK09885, PRK09885, type II toxin-antitoxin system YafO family toxin	NA|98aa|up_3|NZ_LS483296.1_3715330_3715624_-	PRK09778, PRK09778, type I toxin-antitoxin system antitoxin YafN	NA|352aa|up_2|NZ_LS483296.1_3715675_3716731_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|262aa|up_1|NZ_LS483296.1_3716801_3717587_-	PRK06778, PRK06778, hypothetical protein; Validated	NA|580aa|up_0|NZ_LS483296.1_3717531_3719271_+	COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|166aa|down_0|NZ_LS483296.1_3719486_3719984_-	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|258aa|down_1|NZ_LS483296.1_3720159_3720933_-	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]	NA|87aa|down_2|NZ_LS483296.1_3721118_3721379_+	COG3077, RelB, DNA-damage-inducible protein J [DNA replication, recombination, and repair]	NA|247aa|down_3|NZ_LS483296.1_3721806_3722547_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|256aa|down_4|NZ_LS483296.1_3722517_3723285_-	pfam13230, GATase_4, Glutamine amidotransferases class-II	NA|193aa|down_5|NZ_LS483296.1_3723490_3724069_-	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase	NA|815aa|down_6|NZ_LS483296.1_3724308_3726753_+	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed	NA|158aa|down_7|NZ_LS483296.1_3726795_3727269_-	PRK09993, PRK09993, C-lysozyme inhibitor; Provisional	NA|257aa|down_8|NZ_LS483296.1_3727422_3728193_+	PRK10438, PRK10438, C-N hydrolase family amidase; Provisional	NA|59aa|down_9|NZ_LS483296.1_3729148_3729325_-	NA
