assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900474555.1_40657_E01	NZ_LS483308	Staphylococcus aureus strain NCTC13137 chromosome 1	1	391104-391205	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|128aa|up_7|NZ_LS483308.1_382349_382733_-,NA|540aa|up_5|NZ_LS483308.1_383687_385307_-,NA|34aa|up_0|NZ_LS483308.1_390329_390431_+,NA|221aa|down_1|NZ_LS483308.1_392295_392958_-,NA|179aa|down_7|NZ_LS483308.1_399049_399586_-	NA|84aa|up_9|NZ_LS483308.1_381022_381274_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|194aa|up_8|NZ_LS483308.1_381702_382284_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_7|NZ_LS483308.1_382349_382733_-	NA	NA|209aa|up_6|NZ_LS483308.1_382988_383615_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|540aa|up_5|NZ_LS483308.1_383687_385307_-	NA	NA|508aa|up_4|NZ_LS483308.1_385421_386945_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_3|NZ_LS483308.1_386960_387530_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_2|NZ_LS483308.1_388021_388777_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_1|NZ_LS483308.1_388856_390245_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|34aa|up_0|NZ_LS483308.1_390329_390431_+	NA	NA|319aa|down_0|NZ_LS483308.1_391221_392178_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|221aa|down_1|NZ_LS483308.1_392295_392958_-	NA	NA|136aa|down_2|NZ_LS483308.1_393100_393508_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_LS483308.1_394020_394599_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_LS483308.1_394598_395867_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_LS483308.1_395904_397371_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_LS483308.1_397395_398937_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NZ_LS483308.1_399049_399586_-	NA	NA|235aa|down_8|NZ_LS483308.1_399978_400683_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NZ_LS483308.1_401081_401354_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_900474555.1_40657_E01	NZ_LS483308	Staphylococcus aureus strain NCTC13137 chromosome 1	2	2164351-2164436	2	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	CAACTTTAGTTGTTAGGGGCTCTTATGCA	29	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|77aa|up_5|NZ_LS483308.1_2159225_2159456_-,NA|364aa|up_0|NZ_LS483308.1_2163242_2164334_+,NA|35aa|down_0|NZ_LS483308.1_2164838_2164943_-,NA|53aa|down_1|NZ_LS483308.1_2165619_2165778_+,NA|31aa|down_2|NZ_LS483308.1_2166225_2166318_+	NA|237aa|up_9|NZ_LS483308.1_2154836_2155547_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_LS483308.1_2155667_2156111_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_LS483308.1_2156310_2156724_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_LS483308.1_2157180_2158554_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_LS483308.1_2159225_2159456_-	NA	NA|313aa|up_4|NZ_LS483308.1_2159486_2160425_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_LS483308.1_2160860_2161526_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_LS483308.1_2161677_2161998_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|326aa|up_1|NZ_LS483308.1_2161999_2162977_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_LS483308.1_2163242_2164334_+	NA	NA|35aa|down_0|NZ_LS483308.1_2164838_2164943_-	NA	NA|53aa|down_1|NZ_LS483308.1_2165619_2165778_+	NA	NA|31aa|down_2|NZ_LS483308.1_2166225_2166318_+	NA	NA|286aa|down_3|NZ_LS483308.1_2166438_2167296_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_4|NZ_LS483308.1_2167363_2168146_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_5|NZ_LS483308.1_2168377_2170183_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_6|NZ_LS483308.1_2170863_2172402_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_7|NZ_LS483308.1_2172436_2174569_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_8|NZ_LS483308.1_2174580_2175015_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_9|NZ_LS483308.1_2175014_2176121_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional
GCF_900474555.1_40657_E01	NZ_LS483308	Staphylococcus aureus strain NCTC13137 chromosome 1	3	2176744-2176829	3	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	CCAACTGATTTTTGCGTATCATTAGT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|35aa|up_9|NZ_LS483308.1_2164838_2164943_-,NA|53aa|up_8|NZ_LS483308.1_2165619_2165778_+,NA|31aa|up_7|NZ_LS483308.1_2166225_2166318_+,NA	NA|35aa|up_9|NZ_LS483308.1_2164838_2164943_-	NA	NA|53aa|up_8|NZ_LS483308.1_2165619_2165778_+	NA	NA|31aa|up_7|NZ_LS483308.1_2166225_2166318_+	NA	NA|286aa|up_6|NZ_LS483308.1_2166438_2167296_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|up_5|NZ_LS483308.1_2167363_2168146_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|up_4|NZ_LS483308.1_2168377_2170183_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|up_3|NZ_LS483308.1_2170863_2172402_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|up_2|NZ_LS483308.1_2172436_2174569_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|up_1|NZ_LS483308.1_2174580_2175015_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|up_0|NZ_LS483308.1_2175014_2176121_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_0|NZ_LS483308.1_2184162_2185518_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_1|NZ_LS483308.1_2185544_2186477_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|270aa|down_2|NZ_LS483308.1_2186478_2187288_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|303aa|down_3|NZ_LS483308.1_2187476_2188385_-	cd09989, Arginase, Arginase family	NA|355aa|down_4|NZ_LS483308.1_2194579_2195644_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|481aa|down_5|NZ_LS483308.1_2195791_2197234_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|down_6|NZ_LS483308.1_2197556_2198030_-	pfam17080, SepA, Multidrug Resistance efflux pump	NA|448aa|down_7|NZ_LS483308.1_2198128_2199472_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|228aa|down_8|NZ_LS483308.1_2199650_2200334_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|396aa|down_9|NZ_LS483308.1_2200352_2201540_-	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc
GCF_900474555.1_40657_E01	NZ_LS483308	Staphylococcus aureus strain NCTC13137 chromosome 1	4	2400090-2400183	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	GCGCATGCATAAAAGCCCCTAACAACCAGAGGT	33	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|39aa|up_9|NZ_LS483308.1_2389222_2389339_-,NA	NA|39aa|up_9|NZ_LS483308.1_2389222_2389339_-	NA	NA|144aa|up_8|NZ_LS483308.1_2389443_2389875_-	pfam11070, DUF2871, Protein of unknown function (DUF2871)	NA|426aa|up_7|NZ_LS483308.1_2390081_2391359_-	COG1511, COG1511, Predicted membrane protein [Function unknown]	NA|208aa|up_6|NZ_LS483308.1_2391519_2392143_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|315aa|up_5|NZ_LS483308.1_2392188_2393133_+	cd12827, EcCorA_ZntB-like_u2, uncharacterized bacterial subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB family	NA|481aa|up_4|NZ_LS483308.1_2393217_2394660_-	TIGR01996, Includes:_Phosphotransferase_enzyme_IIB_component, PTS system, sucrose-specific IIBC component	NA|128aa|up_3|NZ_LS483308.1_2394842_2395226_+	pfam08349, DUF1722, Protein of unknown function (DUF1722)	NA|702aa|up_2|NZ_LS483308.1_2396713_2398819_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|141aa|up_1|NZ_LS483308.1_2398889_2399312_+	COG3871, COG3871, Uncharacterized stress protein (general stress protein 26) [General function prediction only]	NA|119aa|up_0|NZ_LS483308.1_2399576_2399933_+	pfam16230, DUF4889, Domain of unknown function (DUF4889)	NA|426aa|down_0|NZ_LS483308.1_2400215_2401493_-	PRK11283, gltP, glutamate/aspartate:proton symporter; Provisional	NA|122aa|down_1|NZ_LS483308.1_2401674_2402040_-	pfam11337, DUF3139, Protein of unknown function (DUF3139)	NA|143aa|down_2|NZ_LS483308.1_2403100_2403529_+	cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18	NA|390aa|down_3|NZ_LS483308.1_2403635_2404805_-	COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism]	NA|218aa|down_4|NZ_LS483308.1_2405232_2405886_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|345aa|down_5|NZ_LS483308.1_2405908_2406943_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|151aa|down_6|NZ_LS483308.1_2406966_2407419_-	pfam01590, GAF, GAF domain	NA|226aa|down_7|NZ_LS483308.1_2407438_2408116_-	pfam02665, Nitrate_red_gam, Nitrate reductase gamma subunit	NA|192aa|down_8|NZ_LS483308.1_2408108_2408684_-	COG2180, NarJ, Nitrate reductase delta subunit [Energy production and conversion]	NA|520aa|down_9|NZ_LS483308.1_2408676_2410236_-	COG1140, NarY, Nitrate reductase beta subunit [Energy production and conversion]
GCF_900474555.1_40657_E01	NZ_LS483308	Staphylococcus aureus strain NCTC13137 chromosome 1	5	2433106-2433203	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTTCTACGAATTTTATGAGCTAGAAAGGC	29	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|35aa|up_2|NZ_LS483308.1_2430828_2430933_+,NA|35aa|down_0|NZ_LS483308.1_2433587_2433692_-	NA|200aa|up_9|NZ_LS483308.1_2424305_2424905_-	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]	NA|121aa|up_8|NZ_LS483308.1_2424923_2425286_-	pfam14729, DUF4467, Domain of unknown function with cystatin-like fold (DUF4467)	NA|417aa|up_7|NZ_LS483308.1_2425540_2426791_+	pfam02388, FemAB, FemAB family	NA|244aa|up_6|NZ_LS483308.1_2426887_2427619_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|240aa|up_5|NZ_LS483308.1_2427615_2428335_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|260aa|up_4|NZ_LS483308.1_2428315_2429095_-	cd13711, PBP2_Ngo0372_TcyA, Substrate binding domain of ABC transporters involved in cystine import; the type 2 periplasmic binding protein fold	NA|480aa|up_3|NZ_LS483308.1_2429215_2430655_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|35aa|up_2|NZ_LS483308.1_2430828_2430933_+	NA	NA|229aa|up_1|NZ_LS483308.1_2431086_2431773_-	PRK14119, gpmA, phosphoglyceromutase; Provisional	NA|289aa|up_0|NZ_LS483308.1_2432099_2432966_-	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|35aa|down_0|NZ_LS483308.1_2433587_2433692_-	NA	NA|438aa|down_1|NZ_LS483308.1_2433786_2435100_+	pfam11621, Sbi-IV, C3 binding domain 4 of IgG-bind protein SBI	NA|310aa|down_2|NZ_LS483308.1_2435635_2436565_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|316aa|down_3|NZ_LS483308.1_2437131_2438079_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|326aa|down_4|NZ_LS483308.1_2438080_2439058_+	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|156aa|down_5|NZ_LS483308.1_2439109_2439577_-	pfam06177, QueT, QueT transporter	NA|231aa|down_6|NZ_LS483308.1_2439587_2440280_-	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|372aa|down_7|NZ_LS483308.1_2440290_2441406_-	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|336aa|down_8|NZ_LS483308.1_2441383_2442391_-	PRK06256, PRK06256, biotin synthase; Validated	NA|453aa|down_9|NZ_LS483308.1_2442392_2443751_-	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase
