assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900474645.1_41767_A01	NZ_LS483307	Streptococcus pyogenes strain NCTC5163 chromosome 1	1	119190-119423	1,1	PILER-CR,CRISPRCasFinder	no		cas3,DinG,csm6,cas2,cas4,cas7,cas8c,cas5,DEDDh,csa3	Orphan	AGAGTTAGATGGTGAAGAAGTCCCAGAAGTTCCAAGCGAGAGCTTAGAACC,CCATTAATGCCAGAGCTAGATGGTGAAGAAGTCCC	51,35	0	0	NA	NA	NA:NA	2,1	2	Orphan	cas3,DinG,csm6,cas2,cas4,cas7,cas8c,cas5,DEDDh,csa3	NA,NA|220aa|down_5|NZ_LS483307.1_131134_131794_-	NA|257aa|up_9|NZ_LS483307.1_109539_110310_-	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|356aa|up_8|NZ_LS483307.1_110357_111425_-	TIGR03107, Glutamyl_aminopeptidase, glutamyl aminopeptidase	NA|98aa|up_7|NZ_LS483307.1_111880_112174_+	pfam15513, DUF4651, Domain of unknown function (DUF4651)	NA|106aa|up_6|NZ_LS483307.1_112170_112488_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|209aa|up_5|NZ_LS483307.1_112505_113132_+	cd02796, tRNA_bind_bactPheRS, tRNA-binding-domain-containing prokaryotic phenylalanly tRNA synthetase (PheRS) beta chain	NA|132aa|up_4|NZ_LS483307.1_113282_113678_+	PRK07274, PRK07274, single-stranded DNA-binding protein; Provisional	NA|214aa|up_3|NZ_LS483307.1_113936_114578_-	COG1428, COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism]	NA|326aa|up_2|NZ_LS483307.1_114597_115575_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|291aa|up_1|NZ_LS483307.1_115561_116434_-	PRK00114, hslO, Hsp33 family molecular chaperone HslO	NA|498aa|up_0|NZ_LS483307.1_116580_118074_-	pfam08270, PRD_Mga, M protein trans-acting positive regulator (MGA) PRD domain	NA|572aa|down_0|NZ_LS483307.1_121371_123087_+	TIGR04226, Fimbrial_subunit_type_2, fimbrial isopeptide formation D2 domain	NA|311aa|down_1|NZ_LS483307.1_123173_124106_+	pfam17802, SpaA, Prealbumin-like fold domain	NA|296aa|down_2|NZ_LS483307.1_124083_124971_+	cd05827, Sortase_C, Sortase domain found in class C sortases	NA|286aa|down_3|NZ_LS483307.1_124972_125830_+	cd05827, Sortase_C, Sortase domain found in class C sortases	NA|1700aa|down_4|NZ_LS483307.1_125948_131048_+	COG4932, COG4932, Predicted outer membrane protein [Cell envelope biogenesis, outer membrane]	NA|220aa|down_5|NZ_LS483307.1_131134_131794_-	NA	NA|469aa|down_6|NZ_LS483307.1_132146_133553_+	COG2031, AtoE, Short chain fatty acids transporter [Lipid metabolism]	NA|304aa|down_7|NZ_LS483307.1_133621_134533_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|395aa|down_8|NZ_LS483307.1_134653_135838_+	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|220aa|down_9|NZ_LS483307.1_135849_136509_+	COG1788, AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism]
GCF_900474645.1_41767_A01	NZ_LS483307	Streptococcus pyogenes strain NCTC5163 chromosome 1	2	996009-996110	2	CRISPRCasFinder	no		cas3,DinG,csm6,cas2,cas4,cas7,cas8c,cas5,DEDDh,csa3	Orphan	AATAATTGGTATAGTCTAATTATA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,csm6,cas2,cas4,cas7,cas8c,cas5,DEDDh,csa3	NA,NA|262aa|down_6|NZ_LS483307.1_1003940_1004726_+,NA|63aa|down_8|NZ_LS483307.1_1006057_1006246_-	NA|83aa|up_9|NZ_LS483307.1_983725_983974_-	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|773aa|up_8|NZ_LS483307.1_984336_986655_-	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|441aa|up_7|NZ_LS483307.1_987184_988507_+	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism]	NA|412aa|up_6|NZ_LS483307.1_988626_989862_+	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|258aa|up_5|NZ_LS483307.1_990231_991005_-	pfam07373, CAMP_factor, CAMP factor (Cfa)	NA|279aa|up_4|NZ_LS483307.1_991373_992210_-	cd00996, PBP2_AatB_like, Polar amino acids-binding domain of ATP-binding cassette transporter-like systems that belong to the type 2 periplasmic binding fold protein superfamily	NA|210aa|up_3|NZ_LS483307.1_992225_992855_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|214aa|up_2|NZ_LS483307.1_992864_993506_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|112aa|up_1|NZ_LS483307.1_993612_993948_-	COG2824, PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]	NA|605aa|up_0|NZ_LS483307.1_994143_995958_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|186aa|down_0|NZ_LS483307.1_996133_996691_-	TIGR02227, Inactive_signal_peptidase_IA	NA|501aa|down_1|NZ_LS483307.1_996908_998411_-	PRK05826, PRK05826, pyruvate kinase; Provisional	NA|338aa|down_2|NZ_LS483307.1_998473_999487_-	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|1037aa|down_3|NZ_LS483307.1_999566_1002677_-	PRK07279, dnaE, DNA polymerase III DnaE; Reviewed	NA|124aa|down_4|NZ_LS483307.1_1002861_1003233_+	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|233aa|down_5|NZ_LS483307.1_1003232_1003931_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|262aa|down_6|NZ_LS483307.1_1003940_1004726_+	NA	NA|205aa|down_7|NZ_LS483307.1_1004852_1005467_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|63aa|down_8|NZ_LS483307.1_1006057_1006246_-	NA	NA|267aa|down_9|NZ_LS483307.1_1006483_1007284_+	pfam13930, Endonuclea_NS_2, DNA/RNA non-specific endonuclease
GCF_900474645.1_41767_A01	NZ_LS483307	Streptococcus pyogenes strain NCTC5163 chromosome 1	3	1310014-1310244	1,2,3	CRT,PILER-CR,CRISPRCasFinder	no	cas2,cas4,cas7,cas8c,cas5	cas3,DinG,csm6,cas2,cas4,cas7,cas8c,cas5,DEDDh,csa3	Type I-C, Type I-U?,Type I-U	TATTTCAATCCACTCACCCATGAAGGGTGAGAC,ATTTCAATCCACTCACCCATGAAGGGTGAGAC,TTTCAATCCACTCACCCATGAAGGGTGAGAC	33,32,31	5	7	1310047-1310080|1310114-1310146|1310114-1310146|1310048-1310082|1310115-1310148|1310115-1310148|1310047-1310082	NZ_LS483307.1_1233318-1233285|NZ_LS483307.1_1052506-1052538|NZ_LS483307.1_1011546-1011578|NZ_LS483307.1_1233318-1233284|NZ_LS483307.1_1052506-1052539|NZ_LS483307.1_1011546-1011579|NZ_LS483307.1_1233318-1233283	I-C:I-C:I-C	3,3,3	3	TypeI-C,TypeI-U?,TypeI-U	cas3,DinG,csm6,cas2,cas4,cas7,cas8c,cas5,DEDDh,csa3	NA,NA|183aa|down_6|NZ_LS483307.1_1321218_1321767_-	NA|412aa|up_9|NZ_LS483307.1_1299940_1301176_-	PRK01388, PRK01388, arginine deiminase; Provisional	NA|227aa|up_8|NZ_LS483307.1_1301449_1302130_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|158aa|up_7|NZ_LS483307.1_1302271_1302745_+	COG1438, ArgR, Arginine repressor [Transcription]	NA|239aa|up_6|NZ_LS483307.1_1302910_1303627_-	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only]	NA|360aa|up_5|NZ_LS483307.1_1303649_1304729_-	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown]	NA|578aa|up_4|NZ_LS483307.1_1304801_1306535_-	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|247aa|up_3|NZ_LS483307.1_1306531_1307272_-	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|369aa|up_2|NZ_LS483307.1_1307359_1308466_-	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|208aa|up_1|NZ_LS483307.1_1308508_1309132_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|237aa|up_0|NZ_LS483307.1_1309144_1309855_-	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	cas2|98aa|down_0|NZ_LS483307.1_1310392_1310686_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas4|225aa|down_1|NZ_LS483307.1_1311707_1312382_-	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense    mechanisms]	cas7|283aa|down_2|NZ_LS483307.1_1312383_1313232_-	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas8c|632aa|down_3|NZ_LS483307.1_1313236_1315132_-	TIGR01863, CRISPR-associated_protein_CT1133_family, CRISPR-associated protein Cas8c/Csd1, subtype I-C/DVULG	cas5|243aa|down_4|NZ_LS483307.1_1315131_1315860_-	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	NA|884aa|down_5|NZ_LS483307.1_1318553_1321205_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|183aa|down_6|NZ_LS483307.1_1321218_1321767_-	NA	NA|48aa|down_7|NZ_LS483307.1_1321984_1322128_-	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|132aa|down_8|NZ_LS483307.1_1322451_1322847_-	PRK07758, PRK07758, hypothetical protein; Provisional	NA|85aa|down_9|NZ_LS483307.1_1322867_1323122_-	pfam08930, DUF1912, Domain of unknown function (DUF1912)
