The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LS483314	Staphylococcus aureus strain NCTC3761 chromosome 1	2774360	720233	728053	2774360		Hokovirus(16.67%)	10	NA	NA
WP_000244415.1|720233_721289_-	two-component system sensor histidine kinase SaeS	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|721288_721975_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|721949_722423_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093556.1|722764_723205_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637687.1|723484_724069_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062972.1|724167_724881_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|724884_725304_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|725305_725974_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604515.1|726324_726918_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	43.5	1.2e-38
WP_001217794.1|726901_728053_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	3.5e-23
>prophage 2
NZ_LS483314	Staphylococcus aureus strain NCTC3761 chromosome 1	2774360	740024	754754	2774360		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_111688560.1|740024_741083_+	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	27.7	3.9e-21
WP_000197275.1|741377_741920_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429006.1|742599_743517_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	2.1e-07
WP_031797439.1|743606_743708_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193751.1|743785_745291_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930014.1|745631_746132_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068497.1|746151_747018_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|747818_748217_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_111688562.1|748179_750285_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.6	0.0e+00
WP_000562498.1|750402_751374_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000499195.1|751887_752043_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876318.1|752081_753053_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_001245577.1|753039_753996_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616842.1|753992_754754_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
>prophage 3
NZ_LS483314	Staphylococcus aureus strain NCTC3761 chromosome 1	2774360	805303	821807	2774360	terminase,integrase,coat	Staphylococcus_phage(64.71%)	23	802187:802202	824011:824026
802187:802202	attL	GGTGTTACTAAAGCAG	NA	NA	NA	NA
WP_001050063.1|805303_807676_+	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	39.0	5.1e-93
WP_001085185.1|807697_808162_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	100.0	1.5e-81
WP_111688701.1|808724_809834_-|integrase	site-specific integrase	integrase	H0UST3	Bacillus_phage	44.6	2.0e-76
WP_000272128.1|809823_810753_-	helix-turn-helix transcriptional regulator	NA	Q9AZH9	Lactococcus_phage	35.6	2.2e-12
WP_000163542.1|810940_811159_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000800860.1|811171_811309_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000850930.1|811310_811721_+	hypothetical protein	NA	A0A2H4JBF1	uncultured_Caudovirales_phage	85.8	2.4e-59
WP_001103953.1|811721_812015_+	DUF1474 family protein	NA	A0A1W6JQH0	Staphylococcus_phage	61.8	8.9e-24
WP_001574576.1|812102_812972_+	primase C-terminal domain-containing protein	NA	A0A1W6JQL5	Staphylococcus_phage	96.2	2.7e-161
WP_001574574.1|812988_814446_+	hypothetical protein	NA	A0A1W6JQD6	Staphylococcus_phage	96.3	1.0e-277
WP_001039168.1|814746_815109_+	hypothetical protein	NA	A0A1W6JQD5	Staphylococcus_phage	99.2	8.9e-66
WP_000998182.1|815110_815395_+	hypothetical protein	NA	A0A1W6JQE4	Staphylococcus_phage	92.6	1.0e-45
WP_001019780.1|815391_816033_+	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	94.4	5.9e-113
WP_001190615.1|816549_816891_+	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	99.1	1.4e-57
WP_111688564.1|816902_817481_+	pathogenicity island protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	38.4	1.4e-28
WP_000853281.1|817498_817717_+	hypothetical protein	NA	NA	NA	NA	NA
WP_111688566.1|817767_818295_+|coat	spore coat protein	coat	Q4ZE87	Staphylococcus_phage	94.9	4.3e-85
WP_065252035.1|818297_818639_+	pathogenicity island protein	NA	A0A1W6JQM3	Staphylococcus_phage	98.2	1.9e-57
WP_111688568.1|818635_819205_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	96.8	8.7e-100
WP_000624990.1|819633_820152_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000591858.1|820148_820577_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000705255.1|820563_821343_+	hypothetical protein	NA	NA	NA	NA	NA
WP_078161771.1|821522_821807_+	DUF3102 domain-containing protein	NA	A0A2H4JAH5	uncultured_Caudovirales_phage	57.6	4.3e-23
824011:824026	attR	CTGCTTTAGTAACACC	NA	NA	NA	NA
>prophage 4
NZ_LS483314	Staphylococcus aureus strain NCTC3761 chromosome 1	2774360	856067	902372	2774360	tail,holin,terminase,integrase,portal,plate,head	Staphylococcus_phage(54.69%)	67	852211:852226	878374:878389
852211:852226	attL	ACAAGCAAAAGGTAAT	NA	NA	NA	NA
WP_001006453.1|856067_857318_+	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	44.8	1.1e-110
WP_001010508.1|857307_857772_+	SUF system NifU family Fe-S cluster assembly protein	NA	NA	NA	NA	NA
WP_111688574.1|857922_859320_+	Fe-S cluster assembly protein SufB	NA	NA	NA	NA	NA
WP_111688576.1|859387_860437_-|integrase	site-specific integrase	integrase	A1KWY3	Staphylococcus_virus	99.7	1.3e-202
WP_000337827.1|860549_860729_+	hypothetical protein	NA	Q4ZBP0	Staphylococcus_phage	100.0	3.7e-25
WP_111688578.1|860708_861641_-	hypothetical protein	NA	A0EX19	Staphylococcus_virus	99.7	2.5e-173
WP_111688580.1|861676_862288_-	helix-turn-helix domain-containing protein	NA	B5WZL2	Staphylococcus_phage	89.2	5.5e-100
WP_074371007.1|862458_862686_+	BetR domain protein	NA	B5WZL3	Staphylococcus_phage	93.3	2.6e-31
WP_015978377.1|862746_862908_+	hypothetical protein	NA	Q4ZB04	Staphylococcus_virus	100.0	4.3e-20
WP_111688703.1|862900_863194_-	hypothetical protein	NA	Q4ZB03	Staphylococcus_virus	96.3	9.8e-39
WP_111688582.1|863201_863939_+	ORF6C domain-containing protein	NA	M9NS32	Staphylococcus_phage	98.3	4.7e-130
WP_031864595.1|864043_864247_-	hypothetical protein	NA	A0A2H4JBA9	uncultured_Caudovirales_phage	69.8	1.7e-18
WP_042856228.1|864529_864691_+	DUF1270 family protein	NA	C7F7L3	Staphylococcus_phage	98.1	7.2e-20
WP_048667633.1|864783_865044_+	DUF1108 family protein	NA	Q4ZBM7	Staphylococcus_phage	97.7	4.4e-43
WP_000002516.1|865058_865538_+	siphovirus Gp157 family protein	NA	A0A0H4J328	Staphylococcus_phage	100.0	1.1e-82
WP_106910141.1|865537_866176_+	ERF family protein	NA	A0A059T7J7	Staphylococcus_phage	98.6	1.1e-114
WP_070008590.1|866175_866601_+	single-stranded DNA-binding protein	NA	A0A0E3XC62	Staphylococcus_phage	90.8	3.0e-65
WP_001004506.1|866611_867163_+	HNH endonuclease	NA	A0A2H4PQR4	Staphylococcus_phage	100.0	1.6e-106
WP_111688584.1|867163_867838_+	hypothetical protein	NA	C8CGZ0	Staphylococcus_phage	98.7	2.6e-127
WP_111688586.1|867830_868586_+	DnaD domain protein	NA	C8CGZ1	Staphylococcus_phage	99.6	1.1e-142
WP_001132247.1|868585_868942_+	hypothetical protein	NA	B7T0A8	Staphylococcus_virus	97.5	2.2e-61
WP_001106169.1|868938_870180_+	AAA family ATPase	NA	C8CGZ3	Staphylococcus_phage	99.8	3.3e-229
WP_001024406.1|870176_870392_+	hypothetical protein	NA	A9CR72	Staphylococcus_phage	100.0	2.8e-35
WP_001123688.1|870394_870616_+	DUF3269 family protein	NA	Q9G021	Staphylococcus_phage	100.0	1.3e-35
WP_000049798.1|870626_871031_+	DUF1064 domain-containing protein	NA	G4KNP2	Staphylococcus_phage	100.0	1.6e-68
WP_042903520.1|871035_871221_+	DUF3113 family protein	NA	A0A0N9BBI1	Staphylococcus_phage	98.4	5.4e-27
WP_016028254.1|871221_871590_+	hypothetical protein	NA	A0A2H4PQJ6	Staphylococcus_phage	100.0	3.1e-50
WP_111688588.1|871593_871836_+	hypothetical protein	NA	Q4ZDP7	Staphylococcus_virus	96.2	5.6e-40
WP_111688590.1|871850_872099_+	DUF1024 family protein	NA	Q4ZDW9	Staphylococcus_virus	97.6	1.7e-36
WP_000185698.1|872091_872631_+	dUTP diphosphatase	NA	B2ZYX2	Staphylococcus_phage	70.6	3.7e-60
WP_000195800.1|872667_872874_+	DUF1381 domain-containing protein	NA	A0A2I6PEM9	Staphylococcus_phage	95.6	1.6e-16
WP_000592226.1|872870_873257_+	hypothetical protein	NA	Q4ZDW6	Staphylococcus_virus	100.0	4.0e-64
WP_000595275.1|873253_873427_+	transcriptional activator RinB	NA	Q4ZAX6	Staphylococcus_virus	93.0	3.5e-20
WP_000286968.1|873427_873829_+	hypothetical protein	NA	A0A2H4PQK5	Staphylococcus_phage	100.0	5.6e-69
WP_000594082.1|874183_874678_+|terminase	terminase	terminase	R4IH30	Staphylococcus_phage	100.0	1.1e-74
WP_001606760.1|874670_875879_+|terminase	PBSX family phage terminase large subunit	terminase	R4IG95	Staphylococcus_phage	100.0	6.1e-236
WP_172449173.1|875892_877311_+|portal	phage portal protein	portal	Q4ZB45	Staphylococcus_virus	98.7	1.4e-271
WP_015978359.1|877249_878230_+|head	phage head morphogenesis protein	head	Q4ZB44	Staphylococcus_virus	100.0	1.2e-181
WP_000366930.1|878327_878852_+	phage scaffolding protein	NA	Q4ZB42	Staphylococcus_virus	100.0	2.9e-65
878374:878389	attR	ACAAGCAAAAGGTAAT	NA	NA	NA	NA
WP_001044072.1|878863_879823_+	hypothetical protein	NA	Q4ZB40	Staphylococcus_virus	100.0	1.9e-179
WP_000278937.1|879839_880166_+	Rho termination factor N-terminal domain-containing protein	NA	Q4ZB39	Staphylococcus_virus	100.0	5.9e-53
WP_015978368.1|880165_880480_+|head,tail	phage head-tail connector protein	head,tail	Q4ZB38	Staphylococcus_virus	100.0	2.6e-53
WP_015978367.1|880472_880808_+|head	phage head closure protein	head	Q4ZB37	Staphylococcus_virus	100.0	3.9e-60
WP_015978370.1|880794_881208_+	HK97 gp10 family phage protein	NA	Q4ZB36	Staphylococcus_virus	100.0	1.5e-77
WP_000270196.1|881220_881658_+	DUF3168 domain-containing protein	NA	A0A0E3T9M9	Staphylococcus_phage	100.0	2.1e-77
WP_000046067.1|881644_882205_+	hypothetical protein	NA	A0A0H4ITY2	Staphylococcus_phage	100.0	5.9e-101
WP_015978362.1|882266_882761_+	hypothetical protein	NA	Q4ZB32	Staphylococcus_virus	100.0	2.5e-87
WP_049948777.1|882781_883123_+	hypothetical protein	NA	W5R8J4	Staphylococcus_phage	99.1	4.6e-56
WP_031910547.1|883125_886269_+|terminase	terminase	terminase	A7YGV9	Staphylococcus_virus	97.1	1.7e-306
WP_000560198.1|886283_887219_+|tail	phage tail family protein	tail	A7YGW1	Staphylococcus_virus	100.0	3.7e-180
WP_111688594.1|887229_889116_+|tail	phage tail protein	tail	Q4ZAG4	Staphylococcus_virus	99.8	0.0e+00
WP_111688596.1|889128_891027_+	hypothetical protein	NA	Q4ZBX7	Staphylococcus_virus	98.4	0.0e+00
WP_111688598.1|891026_892850_+|plate	BppU family phage baseplate upper protein	plate	A7YGW7	Staphylococcus_virus	99.8	0.0e+00
WP_000705888.1|892849_893227_+	DUF2977 domain-containing protein	NA	Q4ZAU9	Staphylococcus_virus	100.0	9.0e-61
WP_001800921.1|893236_893410_+	XkdX family protein	NA	A0A059T7K6	Staphylococcus_phage	100.0	1.3e-27
WP_000466784.1|893450_893750_+	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
WP_000524040.1|893886_895761_+	glucosaminidase domain-containing protein	NA	Q4ZBX1	Staphylococcus_virus	100.0	0.0e+00
WP_111688600.1|895773_896946_+|plate	BppU family phage baseplate upper protein	plate	I1W629	Staphylococcus_phage	98.7	2.7e-196
WP_111688602.1|896951_897347_+	hypothetical protein	NA	A0EWU9	Staphylococcus_virus	98.5	1.8e-67
WP_000611512.1|897403_897658_+|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_000861038.1|897669_898425_+	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000920041.1|898615_899107_+	staphylokinase	NA	A7TWR8	Staphylococcus_phage	100.0	8.0e-86
WP_001788502.1|899495_899648_+	hypothetical protein	NA	A0A0F6N3H2	Staphylococcus_phage	100.0	3.1e-20
WP_000139423.1|899718_899829_+	hypothetical protein	NA	W5R8J7	Staphylococcus_phage	100.0	1.7e-12
WP_001286805.1|899830_900016_+	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	100.0	2.7e-26
WP_000990948.1|901509_901692_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000180531.1|901688_902372_+	hypothetical protein	NA	A0A0A7S0U2	Clostridium_phage	28.3	1.1e-13
>prophage 5
NZ_LS483314	Staphylococcus aureus strain NCTC3761 chromosome 1	2774360	985496	1039031	2774360	transposase,tRNA,bacteriocin,protease	Streptococcus_phage(33.33%)	52	NA	NA
WP_000448943.1|985496_986486_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_111688614.1|986780_987176_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
WP_001217728.1|987546_988266_+	adaptor protein MecA	NA	NA	NA	NA	NA
WP_000959292.1|988386_989373_+	competence protein CoiA	NA	NA	NA	NA	NA
WP_000082725.1|989420_991229_+	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.5	5.5e-47
WP_001808146.1|991518_992838_-|transposase	ISL3-like element IS1181 family transposase	transposase	NA	NA	NA	NA
WP_000214070.1|994038_994404_-	truncated hemoglobin	NA	NA	NA	NA	NA
WP_000224612.1|994507_995101_-	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_001242102.1|995286_995634_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001077683.1|995650_996286_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
WP_001270834.1|996302_997112_+	NAD kinase	NA	NA	NA	NA	NA
WP_000669934.1|997108_997963_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_111688616.1|997983_999369_+	magnesium transporter	NA	NA	NA	NA	NA
WP_000395153.1|999378_1001223_+	monovalent cation:proton antiporter family protein	NA	NA	NA	NA	NA
WP_000933195.1|1001500_1002271_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_000933105.1|1002467_1003553_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000570687.1|1003894_1005463_+	alanine:cation symporter family protein	NA	NA	NA	NA	NA
WP_001288675.1|1005607_1006366_+	esterase family protein	NA	NA	NA	NA	NA
WP_000600387.1|1006559_1007069_+	2'-5' RNA ligase family protein	NA	NA	NA	NA	NA
WP_001154224.1|1007181_1008372_-	MFS transporter	NA	NA	NA	NA	NA
WP_000258645.1|1008349_1009525_-	diglucosyl diacylglycerol synthase	NA	NA	NA	NA	NA
WP_000340119.1|1009957_1011442_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
WP_001795833.1|1011422_1011683_+	YueH family protein	NA	NA	NA	NA	NA
WP_001049951.1|1011682_1013245_+	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.2	1.7e-36
WP_000928413.1|1013546_1014350_+	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_001795272.1|1014568_1016893_+|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.8e-11
WP_000021865.1|1016909_1018268_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000414165.1|1018406_1019918_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000287265.1|1020404_1020974_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000876826.1|1021183_1021402_+	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000668818.1|1021482_1022469_-	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000214898.1|1022667_1022844_+	YkvS family protein	NA	NA	NA	NA	NA
WP_001033865.1|1022858_1023461_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_031763719.1|1024375_1024477_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001797239.1|1024486_1024759_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_000870827.1|1024802_1026767_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_000668627.1|1026769_1027090_+	YxeA family protein	NA	NA	NA	NA	NA
WP_000571167.1|1027086_1027728_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.0	1.7e-19
WP_001795266.1|1027815_1028106_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001792054.1|1028246_1028384_+	poly(glycerol-phosphate) alpha-glucosyltransferase	NA	NA	NA	NA	NA
WP_000766009.1|1028472_1028829_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001081351.1|1029316_1030276_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001790177.1|1030321_1030453_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000867357.1|1030516_1030732_-	TM2 domain-containing protein	NA	A0A060AN66	Enterococcus_phage	49.1	1.5e-07
WP_000620949.1|1030896_1031448_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000070966.1|1031499_1032438_-	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
WP_000190622.1|1032619_1033981_+	isochorismate synthase MenF	NA	NA	NA	NA	NA
WP_000526694.1|1033967_1035641_+	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA	NA
WP_000150197.1|1035627_1036431_+	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA	NA
WP_000184945.1|1036423_1037245_+	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA	NA
WP_000284458.1|1037482_1037812_-	staphostatin B	NA	NA	NA	NA	NA
WP_001089094.1|1037849_1039031_-|protease	cysteine protease staphopain B	protease	NA	NA	NA	NA
>prophage 6
NZ_LS483314	Staphylococcus aureus strain NCTC3761 chromosome 1	2774360	1059075	1067548	2774360		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861572.1|1059075_1059558_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_001010407.1|1059544_1060669_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174053.1|1060672_1061377_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_000848350.1|1061376_1061640_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666806.1|1061641_1062313_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_111688617.1|1062305_1064495_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.8	3.5e-141
WP_000483720.1|1064473_1065958_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	1.9e-45
WP_000030811.1|1065950_1066979_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	3.4e-62
WP_111688618.1|1066981_1067548_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	39.6	2.3e-28
>prophage 7
NZ_LS483314	Staphylococcus aureus strain NCTC3761 chromosome 1	2774360	1325070	1341274	2774360	terminase,integrase,capsid,portal	Staphylococcus_phage(54.17%)	27	1318794:1318811	1344118:1344135
1318794:1318811	attL	ATTCAATCATTAATATAT	NA	NA	NA	NA
WP_001836882.1|1325070_1326198_-|integrase	site-specific integrase	integrase	A0A0C5AN64	Paenibacillus_phage	31.4	6.2e-33
WP_001183750.1|1326250_1326946_-	Ltp family lipoprotein	NA	A0A2H4J5B8	uncultured_Caudovirales_phage	50.3	3.6e-07
WP_000554410.1|1326957_1327341_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000664917.1|1327487_1327880_-	helix-turn-helix domain-containing protein	NA	A0A2I6PE55	Staphylococcus_phage	53.6	1.6e-28
WP_001209962.1|1328047_1328266_+	DUF739 family protein	NA	A0A2I6PE94	Staphylococcus_phage	62.5	4.9e-19
WP_000932238.1|1328292_1328568_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000392387.1|1328832_1329003_+	hypothetical protein	NA	Q4ZDZ8	Staphylococcus_virus	89.3	2.4e-21
WP_000800341.1|1328991_1329198_-	hypothetical protein	NA	A1BTY8	Staphylococcus_virus	75.0	3.3e-25
WP_001157025.1|1329258_1329942_+	phage repressor protein	NA	A9CR56	Staphylococcus_phage	85.6	5.2e-107
WP_000072840.1|1330040_1330202_+	DUF1270 family protein	NA	R4IH12	Staphylococcus_phage	69.8	1.1e-12
WP_111688634.1|1330288_1330606_+	DUF2482 family protein	NA	W5RAK4	Staphylococcus_phage	68.1	1.6e-26
WP_000786634.1|1330595_1330862_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	53.6	3.0e-18
WP_001004327.1|1330866_1331403_+	host-nuclease inhibitor Gam family protein	NA	A0A0H3U480	Staphylococcus_phage	82.5	1.7e-76
WP_000907597.1|1331403_1332183_+	ATP-binding protein	NA	A0A1W6JPW0	Staphylococcus_phage	88.0	2.3e-127
WP_000702007.1|1332209_1332758_+	hypothetical protein	NA	A7TWM8	Staphylococcus_phage	92.9	1.1e-91
WP_000929466.1|1332770_1333673_+	DnaD domain protein	NA	A0A1P8L6F0	Staphylococcus_phage	52.0	2.9e-49
WP_000946005.1|1333673_1333964_+	hypothetical protein	NA	A0A223LIA9	Staphylococcus_phage	58.1	7.2e-18
WP_000714410.1|1333978_1334143_+	hypothetical protein	NA	A0A0E3T9L7	Staphylococcus_phage	88.9	1.1e-18
WP_000860979.1|1334142_1334454_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000185176.1|1334446_1334977_+	nucleotide pyrophosphohydrolase	NA	A0A1P8VVP1	Streptococcus_phage	38.2	5.2e-22
WP_025174970.1|1335118_1335226_+	DUF1381 domain-containing protein	NA	C8CH06	Staphylococcus_phage	87.5	3.2e-08
WP_000835355.1|1335222_1335687_+	hypothetical protein	NA	C9E2P0	Enterococcus_phage	43.0	3.2e-20
WP_111688635.1|1335963_1336452_+	RNA polymerase subunit sigma-70	NA	R9TMH4	Paenibacillus_phage	27.7	9.7e-07
WP_000090969.1|1336604_1337033_+	helix-turn-helix domain-containing protein	NA	A1EAE0	Streptococcus_phage	45.1	1.1e-25
WP_000207537.1|1337019_1338294_+|terminase	PBSX family phage terminase large subunit	terminase	Q4ZE37	Staphylococcus_virus	76.4	1.9e-195
WP_000158568.1|1338306_1339755_+|portal	phage portal protein	portal	Q4ZE36	Staphylococcus_virus	69.4	7.4e-196
WP_001282612.1|1339744_1341274_+|capsid	minor capsid protein	capsid	Q4ZE35	Staphylococcus_virus	61.6	1.9e-109
1344118:1344135	attR	ATATATTAATGATTGAAT	NA	NA	NA	NA
>prophage 8
NZ_LS483314	Staphylococcus aureus strain NCTC3761 chromosome 1	2774360	1619228	1627558	2774360	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|1619228_1620014_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924220.1|1620139_1621030_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	36.0	3.4e-26
WP_001062187.1|1621039_1622386_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
WP_000683929.1|1622499_1623600_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
WP_000624583.1|1623602_1624280_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1624410_1625517_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217257.1|1625740_1627558_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.3	7.9e-54
>prophage 9
NZ_LS483314	Staphylococcus aureus strain NCTC3761 chromosome 1	2774360	1695392	1704435	2774360	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|1695392_1695911_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000594991.1|1695932_1698206_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.8	5.2e-63
WP_000749795.1|1698408_1700688_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1700962_1701223_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1701241_1702381_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019178.1|1702403_1703429_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005768.1|1703430_1704435_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 10
NZ_LS483314	Staphylococcus aureus strain NCTC3761 chromosome 1	2774360	1839821	1873997	2774360	protease	Staphylococcus_phage(93.75%)	38	NA	NA
WP_001025061.1|1839821_1841003_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
WP_000526539.1|1841112_1842066_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000266096.1|1842458_1843286_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001790712.1|1843288_1843408_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196354.1|1843519_1844521_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_001008551.1|1844642_1845107_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001159022.1|1845119_1846301_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	6.6e-227
WP_000493892.1|1846311_1846944_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
WP_000077358.1|1846950_1847994_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	5.3e-196
WP_001261668.1|1848474_1849977_-	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	1.9e-29
WP_000221177.1|1850499_1850814_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	9.8e-53
WP_000989122.1|1850813_1852106_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.3	9.4e-227
WP_001032833.1|1852192_1853047_-	glucosaminidase domain-containing protein	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1853322_1853547_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671052.1|1853745_1854216_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	99.4	1.0e-82
WP_001153742.1|1854328_1854772_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030469.1|1854758_1855202_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
WP_001168901.1|1855497_1856133_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001096494.1|1856572_1857286_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091445.1|1857545_1857848_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200542.1|1858103_1858469_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000623478.1|1858465_1858819_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	100.0	2.6e-22
WP_000453314.1|1859201_1860035_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	100.0	5.4e-159
WP_000366163.1|1860246_1861155_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	100.0	3.4e-138
WP_000933822.1|1861279_1862473_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000109906.1|1862844_1864437_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_001834463.1|1864814_1865561_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.8	1.4e-142
WP_000672014.1|1865565_1866039_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	4.7e-83
WP_000718107.1|1866104_1866362_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778525.1|1866358_1867360_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.9	2.2e-186
WP_000348374.1|1867364_1868843_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.4	8.1e-283
WP_072433592.1|1869001_1869457_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	97.9	5.7e-78
WP_001795535.1|1869759_1870410_+	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	88.4	2.7e-44
WP_000070655.1|1870490_1871486_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	98.8	6.2e-77
WP_000669027.1|1871561_1872188_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	93.8	5.3e-90
WP_000627537.1|1872228_1872570_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	95.6	3.0e-55
WP_000414214.1|1872670_1873243_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	96.6	1.1e-25
WP_000864143.1|1873439_1873997_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	96.2	2.7e-77
>prophage 11
NZ_LS483314	Staphylococcus aureus strain NCTC3761 chromosome 1	2774360	1883191	1891016	2774360	protease	Staphylococcus_phage(100.0%)	8	NA	NA
WP_000072589.1|1883191_1884400_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	31.5	9.3e-35
WP_000028671.1|1884392_1885949_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	98.3	2.6e-287
WP_001791797.1|1886112_1886247_-	hypothetical protein	NA	NA	NA	NA	NA
WP_017431874.1|1886311_1887031_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	97.9	1.7e-129
WP_001038872.1|1887151_1887871_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	98.7	1.3e-129
WP_001039444.1|1887928_1888651_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	100.0	6.4e-132
WP_001039433.1|1888775_1889483_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	99.6	7.7e-130
WP_001092776.1|1890446_1891016_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	62.6	2.6e-51
>prophage 12
NZ_LS483314	Staphylococcus aureus strain NCTC3761 chromosome 1	2774360	2041486	2053273	2774360	terminase,integrase,coat	Staphylococcus_phage(82.35%)	19	2037369:2037388	2051295:2051314
2037369:2037388	attL	TTTTACATCATTCCTGGCAT	NA	NA	NA	NA
WP_001293079.1|2041486_2042056_-|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	97.4	6.6e-100
WP_072326620.1|2042052_2042265_-	pathogenicity island family protein	NA	Q4ZE86	Staphylococcus_phage	88.6	5.1e-29
WP_001836980.1|2042396_2042924_-|coat	spore coat protein	coat	Q4ZE87	Staphylococcus_phage	97.1	3.7e-89
WP_000448775.1|2042974_2043193_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000846292.1|2043210_2043789_-	hypothetical protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	39.5	1.6e-29
WP_001161659.1|2043800_2044142_-	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	96.5	2.1e-56
WP_001019765.1|2044488_2045130_-	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	93.0	7.2e-111
WP_001149387.1|2045131_2045404_-	hypothetical protein	NA	Q4ZE68	Staphylococcus_phage	100.0	3.2e-44
WP_000148374.1|2045390_2046194_-	bifunctional DNA primase/polymerase	NA	Q4ZE69	Staphylococcus_phage	97.0	6.2e-152
WP_111688665.1|2046369_2047986_-	phage resistance protein	NA	A0A1W6JPF4	Staphylococcus_phage	76.8	6.9e-243
WP_001103943.1|2048060_2048360_-	DUF1474 family protein	NA	A0A1W6JQH0	Staphylococcus_phage	58.2	6.1e-20
WP_001058486.1|2048362_2048572_-	hypothetical protein	NA	Q4ZE76	Staphylococcus_phage	94.2	1.7e-29
WP_000784875.1|2048564_2048711_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000459698.1|2048707_2049025_-	helix-turn-helix domain-containing protein	NA	A0A1W6JQE0	Staphylococcus_phage	94.3	8.6e-49
WP_000794315.1|2049028_2049241_-	helix-turn-helix transcriptional regulator	NA	A0A1W6JQE8	Staphylococcus_phage	84.1	3.8e-24
WP_000616253.1|2049414_2050047_+	helix-turn-helix transcriptional regulator	NA	A0A1W6JQE6	Staphylococcus_phage	82.9	2.2e-96
WP_000179352.1|2050055_2051228_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1W6JQD3	Staphylococcus_phage	98.2	5.9e-220
WP_000240645.1|2051296_2052913_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
2051295:2051314	attR	TTTTACATCATTCCTGGCAT	NA	NA	NA	NA
WP_000917289.1|2052988_2053273_-	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
