The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LS483317	Staphylococcus aureus strain NCTC5663 chromosome 1	2818899	330593	372922	2818899	integrase,portal,protease,terminase,tail,head,holin,capsid	Staphylococcus_phage(84.06%)	71	330483:330500	373608:373625
330483:330500	attL	ATCATACAAGGATGGGAT	NA	NA	NA	NA
WP_106096706.1|330593_331799_-|integrase	site-specific integrase	integrase	A7YGM7	Staphylococcus_virus	99.5	2.5e-221
WP_106096705.1|331903_332521_+	ATPase	NA	A0A2I6PEZ0	Staphylococcus_phage	43.1	1.7e-32
WP_158697090.1|332527_332680_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000705246.1|332736_332919_-	hypothetical protein	NA	A0A0H3U4Z4	Staphylococcus_phage	100.0	4.1e-27
WP_172452292.1|333292_333448_-	hypothetical protein	NA	A0A2I6PDR9	Staphylococcus_phage	98.0	2.4e-20
WP_000094093.1|333459_334167_-	helix-turn-helix transcriptional regulator	NA	G4KNM8	Staphylococcus_phage	100.0	7.7e-130
WP_000548578.1|334337_334577_+	helix-turn-helix transcriptional regulator	NA	G4KNM9	Staphylococcus_phage	100.0	2.3e-38
WP_000435360.1|334589_335033_+	hypothetical protein	NA	W5R971	Staphylococcus_phage	100.0	1.5e-75
WP_000939495.1|335047_335188_+	hypothetical protein	NA	A0A2I6PDT8	Staphylococcus_phage	100.0	1.9e-16
WP_000772137.1|335180_335390_-	hypothetical protein	NA	A0A2I6PDR8	Staphylococcus_phage	100.0	9.1e-31
WP_000389905.1|335446_335638_+	hypothetical protein	NA	Q4ZDR9	Staphylococcus_virus	100.0	2.1e-26
WP_000801108.1|335639_335867_-	hypothetical protein	NA	A7TWL9	Staphylococcus_phage	100.0	1.7e-38
WP_001025595.1|335922_336249_+	hypothetical protein	NA	G4KNN2	Staphylococcus_phage	100.0	5.4e-54
WP_111761854.1|336245_336464_+	hypothetical protein	NA	A0A2I6PDV4	Staphylococcus_phage	98.6	8.6e-32
WP_001124198.1|336493_336757_+	helix-turn-helix domain-containing protein	NA	A0A2I6PEL8	Staphylococcus_phage	100.0	2.5e-46
WP_001285949.1|336768_336930_+	DUF1270 domain-containing protein	NA	Q4ZDR6	Staphylococcus_virus	98.1	1.9e-20
WP_000829611.1|337022_337352_+	hypothetical protein	NA	A0A2I6PEL3	Staphylococcus_phage	100.0	1.4e-33
WP_145959545.1|337332_337593_+	DUF1108 family protein	NA	G4KNN5	Staphylococcus_phage	90.7	1.6e-40
WP_001077279.1|337602_337824_+	DUF2483 family protein	NA	A0A0E3TAJ7	Staphylococcus_phage	98.6	3.2e-34
WP_111761856.1|337816_338596_+	ATP-binding protein	NA	A0A1W6JPW0	Staphylococcus_phage	98.8	1.4e-140
WP_000704705.1|338626_339178_+	single-stranded DNA-binding protein	NA	Q4ZBM4	Staphylococcus_phage	100.0	3.4e-101
WP_111761857.1|339190_339862_+	hypothetical protein	NA	Q9G025	Staphylococcus_virus	98.2	9.8e-127
WP_001037657.1|339854_340610_+	DnaD domain protein	NA	C8CGZ1	Staphylococcus_phage	100.0	3.8e-143
WP_031911827.1|340609_340966_+	hypothetical protein	NA	M9NS37	Staphylococcus_phage	99.2	1.8e-63
WP_111761858.1|340962_342204_+	AAA family ATPase	NA	C8CGZ3	Staphylococcus_phage	99.5	2.2e-228
WP_015978374.1|342200_342416_+	hypothetical protein	NA	Q4ZAY6	Staphylococcus_virus	100.0	3.7e-35
WP_001123688.1|342419_342641_+	DUF3269 family protein	NA	Q9G021	Staphylococcus_phage	100.0	1.3e-35
WP_000049784.1|342651_343056_+	DUF1064 domain-containing protein	NA	A7TWN5	Staphylococcus_phage	100.0	7.1e-72
WP_001187242.1|343060_343246_+	DUF3113 family protein	NA	W5R8N4	Staphylococcus_phage	100.0	1.4e-27
WP_031867833.1|343862_344117_+	DUF3310 domain-containing protein	NA	A0A059T7J9	Staphylococcus_phage	98.8	3.7e-42
WP_078100129.1|344116_344365_+	hypothetical protein	NA	A0A0K1LL46	Staphylococcus_phage	96.3	1.2e-40
WP_031867835.1|344378_344786_+	hypothetical protein	NA	A0A0H4IPW3	Staphylococcus_phage	74.8	8.0e-47
WP_111761859.1|344785_345061_+	hypothetical protein	NA	Q4ZA41	Staphylococcus_virus	95.6	3.0e-42
WP_110166336.1|345053_345305_+	DUF1024 family protein	NA	A0A2H4PQK1	Staphylococcus_phage	97.6	5.4e-38
WP_000028424.1|345294_345468_+	hypothetical protein	NA	A0A2H4PQJ2	Staphylococcus_phage	100.0	1.8e-24
WP_000454994.1|345468_345750_+	hypothetical protein	NA	A0A2I6PDX3	Staphylococcus_phage	100.0	8.5e-48
WP_000889683.1|345750_345912_+	hypothetical protein	NA	A0A2I6PDW5	Staphylococcus_phage	100.0	2.4e-23
WP_025920701.1|345926_346460_+	dUTP diphosphatase	NA	E0Y3R2	Staphylococcus_virus	99.4	1.3e-94
WP_033859700.1|346496_346703_+	DUF1381 domain-containing protein	NA	Q4ZCV6	Staphylococcus_virus	98.5	7.1e-20
WP_000595265.1|346699_346849_+	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_111761860.1|346848_347049_+	DUF1514 family protein	NA	R9QT57	Staphylococcus_phage	95.5	1.2e-27
WP_086037675.1|347071_347533_+	hypothetical protein	NA	R9QT84	Staphylococcus_phage	99.3	1.9e-73
WP_000406191.1|347647_348100_+	nucleoside triphosphate pyrophosphohydrolase family protein	NA	D2JLE1	Staphylococcus_phage	100.0	1.4e-79
WP_000817289.1|348115_348460_+	HNH endonuclease	NA	D2JLE2	Staphylococcus_phage	100.0	4.2e-65
WP_000919026.1|348588_349056_+|terminase	phage terminase small subunit P27 family	terminase	D2JLE3	Staphylococcus_phage	100.0	1.1e-81
WP_000133304.1|349058_350753_+|terminase	phage terminase large subunit	terminase	D2JLE4	Staphylococcus_phage	100.0	0.0e+00
WP_000365300.1|350766_350967_+	hypothetical protein	NA	D2JLE5	Staphylococcus_phage	100.0	1.0e-26
WP_045178579.1|350972_352223_+|portal	phage portal protein	portal	D2JLE6	Staphylococcus_phage	99.8	2.2e-236
WP_000032525.1|352215_352800_+|head,protease	HK97 family phage prohead protease	head,protease	D2JLE7	Staphylococcus_phage	100.0	9.8e-107
WP_106096717.1|352887_354135_+|capsid	phage major capsid protein	capsid	A7TWC4	Staphylococcus_phage	99.8	5.6e-208
WP_001252099.1|354170_354329_+	hypothetical protein	NA	D2JLE9	Staphylococcus_phage	100.0	3.2e-20
WP_001177483.1|354337_354670_+|head,tail	phage head-tail connector protein	head,tail	D2JLF0	Staphylococcus_phage	100.0	2.1e-58
WP_000975314.1|354656_354992_+|head,tail	head-tail adaptor protein	head,tail	A7TWC7	Staphylococcus_phage	100.0	1.1e-59
WP_000501244.1|354991_355369_+	HK97 gp10 family phage protein	NA	D2JLF2	Staphylococcus_phage	100.0	1.1e-61
WP_000611452.1|355365_355746_+	hypothetical protein	NA	D2JLF3	Staphylococcus_phage	100.0	5.8e-68
WP_000570652.1|355746_356700_+	Ig-like domain-containing protein	NA	A7TWD0	Staphylococcus_phage	100.0	6.2e-175
WP_000442601.1|356764_357211_+	hypothetical protein	NA	D2JLF5	Staphylococcus_phage	100.0	5.4e-73
WP_000570353.1|357270_357393_+	hypothetical protein	NA	D2JLF6	Staphylococcus_phage	100.0	6.9e-15
WP_111761861.1|357448_362101_+|tail	phage tail tape measure protein	tail	Q8SDK4	Staphylococcus_phage	95.4	0.0e+00
WP_106096714.1|362100_363591_+|tail	phage tail family protein	tail	D2JLF8	Staphylococcus_phage	97.6	1.9e-292
WP_111761862.1|363606_367392_+	hypothetical protein	NA	Q6R866	Staphylococcus_virus	96.3	0.0e+00
WP_031867842.1|367381_367534_+	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	98.0	1.2e-19
WP_001040261.1|367580_367868_+	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
WP_000539688.1|367925_368222_+	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
WP_072357969.1|368371_368548_+|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	96.6	6.5e-22
WP_047551145.1|368600_368708_-	hypothetical protein	NA	NA	NA	NA	NA
WP_045178738.1|368759_369014_+|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	98.8	3.4e-40
WP_111761863.1|369025_369781_+	CHAP domain-containing protein	NA	Q4ZCZ2	Staphylococcus_virus	98.0	8.4e-151
WP_111761864.1|370219_371155_+	bi-component leukocidin LukPQ subunit P	NA	A0A2H4PQI5	Staphylococcus_phage	91.5	1.6e-162
WP_086037611.1|371156_372137_+	bi-component leukocidin LukPQ subunit Q	NA	Q9MBN2	Staphylococcus_prophage	83.5	1.5e-152
WP_106096712.1|372577_372922_+	complement inhibitor SCIN family protein	NA	A7TWS0	Staphylococcus_phage	56.2	2.5e-25
373608:373625	attR	ATCATACAAGGATGGGAT	NA	NA	NA	NA
>prophage 2
NZ_LS483317	Staphylococcus aureus strain NCTC5663 chromosome 1	2818899	769425	777245	2818899		Hokovirus(16.67%)	10	NA	NA
WP_111762030.1|769425_770481_-	two-component system sensor histidine kinase SaeS	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|770480_771167_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|771141_771615_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093553.1|771956_772397_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637683.1|772676_773261_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062972.1|773359_774073_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|774076_774496_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|774497_775166_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604508.1|775516_776110_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	44.0	6.8e-39
WP_111762031.1|776093_777245_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	2.1e-23
>prophage 3
NZ_LS483317	Staphylococcus aureus strain NCTC5663 chromosome 1	2818899	789217	803736	2818899		uncultured_Caudovirales_phage(50.0%)	13	NA	NA
WP_111762035.1|789217_790276_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.1	5.7e-20
WP_111762036.1|790433_790982_+	5'(3')-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429016.1|791582_792500_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.4	2.1e-07
WP_000193751.1|792782_794288_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930014.1|794628_795129_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068497.1|795148_796015_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|796815_797214_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|797176_799282_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|799399_800371_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_031901244.1|800869_801025_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876318.1|801063_802035_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_111762039.1|802021_802978_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616870.1|802974_803736_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	5.0e-18
>prophage 4
NZ_LS483317	Staphylococcus aureus strain NCTC5663 chromosome 1	2818899	891957	955836	2818899	plate,integrase,portal,terminase,tail,transposase,head,holin,capsid	Staphylococcus_phage(53.52%)	90	894850:894866	936502:936518
WP_001006453.1|891957_893208_+	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	44.8	1.1e-110
WP_001010508.1|893197_893662_+	SUF system NifU family Fe-S cluster assembly protein	NA	NA	NA	NA	NA
WP_001074405.1|893812_895210_+	Fe-S cluster assembly protein SufB	NA	NA	NA	NA	NA
894850:894866	attL	TATTTCTAAAAATGGTG	NA	NA	NA	NA
WP_070854174.1|895277_896327_-|integrase	site-specific integrase	integrase	A1KWY3	Staphylococcus_virus	99.7	4.5e-203
WP_031790428.1|896389_896905_-	hypothetical protein	NA	I1W624	Staphylococcus_phage	99.4	7.2e-37
WP_111762068.1|896908_897409_-	hypothetical protein	NA	B7T094	Staphylococcus_virus	99.4	2.6e-71
WP_111762069.1|897461_897647_-	hypothetical protein	NA	A0A2I6PDS4	Staphylococcus_phage	90.2	5.2e-22
WP_000874710.1|897703_898342_-	LexA family transcriptional regulator	NA	A0A0E3TAG1	Staphylococcus_phage	100.0	8.8e-117
WP_031790429.1|898532_898787_+	helix-turn-helix transcriptional regulator	NA	B7T095	Staphylococcus_virus	100.0	1.8e-41
WP_000394020.1|898802_899006_+	hypothetical protein	NA	A0A0E3XBM9	Staphylococcus_phage	100.0	4.7e-32
WP_111762070.1|899193_899985_+	phage antirepressor KilAC domain-containing protein	NA	Q8SDX0	Staphylococcus_phage	99.2	7.2e-145
WP_000187184.1|899985_900210_+	hypothetical protein	NA	A0A0F6N4M2	Staphylococcus_phage	100.0	3.2e-34
WP_111762071.1|900249_900699_+	hypothetical protein	NA	A0A0H3U2S4	Staphylococcus_phage	98.7	3.3e-78
WP_111762072.1|900646_901030_-	hypothetical protein	NA	A0A097PAT1	Streptococcus_pyogenes_phage	31.6	2.5e-10
WP_031784790.1|901101_901332_+	hypothetical protein	NA	A0A1X9H0Q4	Staphylococcus_phage	100.0	1.5e-31
WP_111762073.1|901315_901483_+	DUF1270 domain-containing protein	NA	Q9MBS6	Staphylococcus_prophage	94.5	8.9e-21
WP_070045969.1|901483_901804_+	hypothetical protein	NA	A0A0K1LL36	Staphylococcus_phage	99.1	1.4e-54
WP_111762074.1|901895_902156_+	DUF1108 family protein	NA	Q9MBS4	Staphylococcus_prophage	96.5	1.4e-41
WP_111762075.1|902170_902650_+	siphovirus Gp157 family protein	NA	Q4ZCX2	Staphylococcus_virus	98.7	4.0e-82
WP_111762076.1|902649_903288_+	ERF family protein	NA	D2JGK1	Staphylococcus_phage	99.1	5.3e-114
WP_111762077.1|903287_903713_+	single-stranded DNA-binding protein	NA	R4IG44	Staphylococcus_phage	96.5	6.3e-71
WP_111762078.1|903726_904401_+	hypothetical protein	NA	Q4ZAK7	Staphylococcus_virus	95.5	5.4e-125
WP_111762079.1|904393_905158_+	DnaD domain protein	NA	A9CR67	Staphylococcus_phage	98.8	5.4e-137
WP_111762080.1|905157_905514_+	hypothetical protein	NA	M9NS37	Staphylococcus_phage	97.5	9.0e-63
WP_111762081.1|905510_906752_+	AAA family ATPase	NA	A0A0E3T8L1	Staphylococcus_phage	99.3	1.4e-227
WP_111762082.1|906748_906964_+	hypothetical protein	NA	A9CR72	Staphylococcus_phage	95.8	1.2e-33
WP_111762083.1|906966_907188_+	DUF3269 family protein	NA	Q9G021	Staphylococcus_phage	98.6	1.1e-34
WP_000049784.1|907198_907603_+	DUF1064 domain-containing protein	NA	A7TWN5	Staphylococcus_phage	100.0	7.1e-72
WP_111762084.1|907607_907793_+	DUF3113 family protein	NA	A0A0H4IPE3	Staphylococcus_phage	95.1	1.7e-25
WP_031903678.1|907793_908051_+	helix-turn-helix transcriptional regulator	NA	Q9MBR5	Staphylococcus_prophage	96.5	1.3e-39
WP_111762085.1|908063_908423_+	hypothetical protein	NA	Q8SDV7	Staphylococcus_phage	98.3	3.8e-61
WP_031807828.1|908422_908680_+	DUF3310 domain-containing protein	NA	B5WZM8	Staphylococcus_phage	98.8	1.3e-42
WP_000235326.1|908682_908883_+	hypothetical protein	NA	C5I650	Staphylococcus_phage	98.5	7.4e-30
WP_111762086.1|908891_909140_+	hypothetical protein	NA	A0A0K1LL46	Staphylococcus_phage	97.6	1.8e-41
WP_001065097.1|909154_909409_+	DUF1024 family protein	NA	A0A0H3U469	Staphylococcus_phage	100.0	5.0e-39
WP_000714403.1|909395_909566_+	hypothetical protein	NA	A0A0H3U4U6	Staphylococcus_phage	100.0	8.2e-22
WP_001066447.1|909558_910095_+	dUTP diphosphatase	NA	A0A0H3U2Z8	Staphylococcus_phage	100.0	7.2e-96
WP_103153016.1|910131_910377_+	hypothetical protein	NA	Q9B0F1	Staphylococcus_virus	87.7	1.4e-27
WP_094969601.1|910373_910580_+	DUF1381 domain-containing protein	NA	Q4ZDP2	Staphylococcus_virus	92.6	6.7e-18
WP_000595257.1|910576_910750_+	transcriptional activator RinB	NA	Q4ZBK0	Staphylococcus_phage	100.0	6.4e-22
WP_000989998.1|910750_910897_+	hypothetical protein	NA	A0A059T5A8	Staphylococcus_phage	100.0	2.2e-15
WP_024936907.1|910920_911343_+	RinA family phage transcriptional activator	NA	S4V7K2	Staphylococcus_phage	99.3	2.1e-74
WP_061735292.1|911531_912026_+|terminase	terminase small subunit	terminase	B7T0C5	Staphylococcus_virus	98.2	8.6e-88
WP_061735291.1|912028_913318_+|terminase	PBSX family phage terminase large subunit	terminase	B7T0C6	Staphylococcus_virus	98.4	1.5e-253
WP_111762087.1|913328_914864_+|portal	phage portal protein	portal	Q4ZDV9	Staphylococcus_virus	97.7	4.3e-287
WP_111762088.1|914870_915866_+|capsid	minor capsid protein	capsid	S4V9L8	Staphylococcus_phage	98.8	3.2e-182
WP_070021573.1|915938_916109_+	hypothetical protein	NA	Q4ZDN0	Staphylococcus_virus	98.2	1.3e-22
WP_098692038.1|916243_916834_+	DUF4355 domain-containing protein	NA	B2ZYY4	Staphylococcus_phage	88.9	3.3e-33
WP_111762089.1|916847_917822_+|capsid	phage major capsid protein	capsid	B7T0D2	Staphylococcus_virus	97.8	5.0e-180
WP_070021229.1|917843_918131_+	hypothetical protein	NA	B7T0D3	Staphylococcus_virus	91.6	4.2e-42
WP_024273326.1|918139_918472_+|head,tail	phage head-tail connector protein	head,tail	B7T0D4	Staphylococcus_virus	99.1	1.6e-53
WP_070021228.1|918468_918771_+	hypothetical protein	NA	A4ZFB6	Staphylococcus_virus	96.0	1.7e-49
WP_001017820.1|918770_919118_+	HK97 gp10 family phage protein	NA	B7T0D5	Staphylococcus_virus	100.0	2.4e-60
WP_070021227.1|919129_919513_+	hypothetical protein	NA	E0Y3L5	Staphylococcus_virus	97.6	1.9e-66
WP_024273329.1|919533_920115_+|tail	phage major tail protein, TP901-1 family	tail	B7T0D7	Staphylococcus_virus	98.4	1.3e-103
WP_001100161.1|920176_920542_+	hypothetical protein	NA	A0A0F6N4J9	Staphylococcus_phage	100.0	3.6e-59
WP_111762090.1|920571_920916_+	hypothetical protein	NA	A0A0F6N3F7	Staphylococcus_phage	99.1	1.2e-56
WP_111762091.1|920932_924400_+	hypothetical protein	NA	Q4ZDU6	Staphylococcus_virus	97.4	4.7e-273
WP_031822665.1|924412_925360_+|tail	phage tail family protein	tail	Q8SDT6	Staphylococcus_phage	99.7	3.6e-183
WP_061735279.1|925368_927270_+|tail	phage tail protein	tail	B7T0E2	Staphylococcus_virus	97.6	0.0e+00
WP_111762092.1|927284_929195_+	hypothetical protein	NA	B7T0E3	Staphylococcus_virus	95.4	0.0e+00
WP_111762093.1|929194_931018_+|plate	BppU family phage baseplate upper protein	plate	M9NUJ5	Staphylococcus_phage	99.7	7.7e-299
WP_016187285.1|931017_931395_+	DUF2977 domain-containing protein	NA	M9NRJ7	Staphylococcus_phage	100.0	1.1e-61
WP_001800921.1|931404_931578_+	XkdX family protein	NA	A0A059T7K6	Staphylococcus_phage	100.0	1.3e-27
WP_000466752.1|931618_931918_+	DUF2951 family protein	NA	B7T0E7	Staphylococcus_virus	100.0	2.5e-42
WP_111762094.1|932054_933965_+	glucosaminidase domain-containing protein	NA	Q8SDT1	Staphylococcus_phage	95.8	0.0e+00
WP_000611512.1|934447_934702_+|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_111762096.1|934713_935469_+	CHAP domain-containing protein	NA	Q4ZCZ2	Staphylococcus_virus	99.6	9.9e-152
WP_111762097.1|935656_936751_+	hypothetical protein	NA	Q4ZCZ1	Staphylococcus_virus	99.7	3.7e-208
936502:936518	attR	TATTTCTAAAAATGGTG	NA	NA	NA	NA
WP_000273396.1|937206_937626_+	hypothetical protein	NA	Q9MBN1	Staphylococcus_prophage	100.0	8.7e-81
WP_015980424.1|937639_938812_+	hypothetical protein	NA	Q9MBN0	Staphylococcus_prophage	100.0	2.0e-215
WP_111762098.1|939410_939725_-	hypothetical protein	NA	NA	NA	NA	NA
WP_111762099.1|940089_941130_+	DUF21 domain-containing protein	NA	NA	NA	NA	NA
WP_111762100.1|941143_942211_+	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_111762101.1|942462_943311_+	DUF72 domain-containing protein	NA	NA	NA	NA	NA
WP_000927625.1|943323_944151_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_111762102.1|944177_945497_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000201875.1|945580_946498_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_000598444.1|946627_947011_+	YutD family protein	NA	NA	NA	NA	NA
WP_000566643.1|947089_947356_-	DUF3055 domain-containing protein	NA	NA	NA	NA	NA
WP_077448376.1|947453_947888_+	DUF86 domain-containing protein	NA	NA	NA	NA	NA
WP_000816182.1|947887_948667_+	TIGR01457 family HAD-type hydrolase	NA	NA	NA	NA	NA
WP_111762103.1|948699_949659_+	D-glycerate dehydrogenase	NA	NA	NA	NA	NA
WP_001790652.1|949912_950023_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000837752.1|950070_950223_+	teichoic acid D-Ala incorporation-associated protein DltX	NA	NA	NA	NA	NA
WP_000129645.1|950238_951696_+	D-alanine--poly(phosphoribitol) ligase subunit DltA	NA	A0A2K9L3I8	Tupanvirus	28.3	4.4e-39
WP_000613541.1|951692_952907_+	PG:teichoic acid D-alanyltransferase DltB	NA	A0A125RNP0	Pseudomonas_phage	26.1	8.5e-20
WP_000395692.1|952924_953161_+	D-alanine--poly(phosphoribitol) ligase subunit 2	NA	NA	NA	NA	NA
WP_000769416.1|953157_954333_+	D-alanyl-lipoteichoic acid biosynthesis protein DltD	NA	NA	NA	NA	NA
WP_111762104.1|954516_955836_-|transposase	ISL3 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_LS483317	Staphylococcus aureus strain NCTC5663 chromosome 1	2818899	1094517	1102990	2818899		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861570.1|1094517_1095000_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	8.0e-22
WP_111762146.1|1094986_1096111_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_111762147.1|1096114_1096819_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	41.2	1.1e-46
WP_000848350.1|1096818_1097082_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_111762148.1|1097083_1097755_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_111762149.1|1097747_1099937_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.8e-140
WP_000483727.1|1099915_1101400_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.5	1.6e-44
WP_111762150.1|1101392_1102421_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	1.3e-61
WP_000238666.1|1102423_1102990_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
>prophage 6
NZ_LS483317	Staphylococcus aureus strain NCTC5663 chromosome 1	2818899	1635616	1643928	2818899	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|1635616_1636402_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_111762340.1|1636527_1637418_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001062177.1|1637427_1638774_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
WP_111762341.1|1638887_1639988_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	1.0e-08
WP_103204988.1|1639990_1640668_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1640798_1641905_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_111762342.1|1642128_1643928_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	6.0e-54
>prophage 7
NZ_LS483317	Staphylococcus aureus strain NCTC5663 chromosome 1	2818899	1713468	1722511	2818899	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364543.1|1713468_1713987_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.8	2.1e-28
WP_111762365.1|1714008_1716282_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.5	9.6e-65
WP_000749796.1|1716484_1718764_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1719038_1719299_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_111762366.1|1719317_1720457_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	6.0e-84
WP_111762367.1|1720479_1721505_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005767.1|1721506_1722511_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 8
NZ_LS483317	Staphylococcus aureus strain NCTC5663 chromosome 1	2818899	1853645	1940788	2818899	transposase,tRNA,protease	Staphylococcus_phage(92.19%)	78	NA	NA
WP_111762400.1|1853645_1860185_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	96.2	3.6e-306
WP_111762401.1|1860512_1860824_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	98.1	1.4e-51
WP_111762402.1|1860845_1863263_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.2	0.0e+00
WP_001025061.1|1863550_1864732_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
WP_000526539.1|1864841_1865795_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764419.1|1865791_1866355_+	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000757543.1|1866474_1866876_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|1867446_1868274_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_078062663.1|1868276_1868396_-	hypothetical protein	NA	NA	NA	NA	NA
WP_111762403.1|1868507_1869509_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.4	4.5e-184
WP_111762404.1|1869630_1870095_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	98.7	4.9e-69
WP_111762405.1|1870107_1871289_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.2	9.5e-226
WP_000493886.1|1871299_1871932_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.0	6.4e-112
WP_172452301.1|1871938_1872982_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.5	2.6e-195
WP_111762406.1|1873462_1874965_-	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
WP_111762407.1|1875486_1875801_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	97.1	3.7e-52
WP_111762408.1|1875800_1877093_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	98.1	1.4e-225
WP_001032833.1|1877179_1878034_-	glucosaminidase domain-containing protein	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1878309_1878534_-	hypothetical protein	NA	NA	NA	NA	NA
WP_111762409.1|1878732_1879203_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	98.1	1.1e-81
WP_001153740.1|1879315_1879759_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030464.1|1879745_1880189_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	99.3	4.9e-58
WP_111762817.1|1880486_1881122_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001096494.1|1881556_1882270_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091445.1|1882528_1882831_+	hypothetical protein	NA	NA	NA	NA	NA
WP_111762410.1|1883086_1883452_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	97.5	1.4e-58
WP_111762411.1|1883448_1883802_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	94.9	3.9e-18
WP_111762412.1|1884051_1884885_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	3.5e-158
WP_000366165.1|1885096_1886005_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.7	9.8e-138
WP_000933822.1|1886129_1887323_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_111762413.1|1887694_1889287_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.6	0.0e+00
WP_111762818.1|1889583_1890330_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	96.8	2.3e-140
WP_072491902.1|1890334_1890808_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	2.8e-83
WP_000718107.1|1890873_1891131_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_111762414.1|1891127_1892129_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.9	1.4e-185
WP_111762415.1|1892133_1893612_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	96.1	2.7e-278
WP_111762819.1|1893770_1894226_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	96.6	7.5e-78
WP_001838615.1|1894528_1895179_+	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	68.5	4.7e-33
WP_111762416.1|1895259_1896255_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	95.6	2.7e-72
WP_111762417.1|1896330_1896957_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	90.9	4.9e-88
WP_172452312.1|1897043_1897727_+	exotoxin	NA	A0EX09	Staphylococcus_phage	32.1	6.5e-25
WP_111762419.1|1897753_1898506_+	hypothetical protein	NA	A0A097PAT7	Streptococcus_pyogenes_phage	46.4	4.9e-50
WP_111762420.1|1898637_1899195_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	94.9	1.7e-76
WP_111762421.1|1899378_1899564_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000375478.1|1899565_1899742_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001801861.1|1900960_1901056_+	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_111762422.1|1901983_1902427_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_111762423.1|1902426_1902870_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_111762424.1|1903398_1905822_+	polysaccharide lyase 8 family protein	NA	NA	NA	NA	NA
WP_172452302.1|1905947_1906325_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_111762425.1|1906846_1910959_-	ATP-binding protein	NA	A0A2H4PQT3	Staphylococcus_phage	98.2	0.0e+00
WP_111762426.1|1911720_1912914_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	67.9	4.7e-140
WP_111762427.1|1912906_1914463_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	98.3	1.8e-285
WP_111762428.1|1914823_1915543_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	97.5	4.3e-128
WP_111762429.1|1915689_1916406_-|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	97.9	5.9e-130
WP_111762430.1|1916573_1917290_-|protease	serine protease	protease	A0A2H4PQN5	Staphylococcus_phage	63.0	1.3e-84
WP_111762431.1|1917411_1918131_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	95.0	1.2e-125
WP_111762432.1|1918188_1918911_-|protease	serine protease	protease	A0A2H4PQN0	Staphylococcus_phage	90.0	7.3e-120
WP_111762433.1|1919026_1919734_-|protease	serine protease	protease	A0A2H4PQN3	Staphylococcus_phage	91.9	1.4e-120
WP_111762434.1|1920799_1921363_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	61.9	1.7e-47
WP_111762435.1|1921848_1922547_-	BsaG protein	NA	A0A2H4PQH0	Staphylococcus_phage	93.5	4.2e-112
WP_111762436.1|1922543_1923305_-	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	A0A2H4PQH2	Staphylococcus_phage	96.0	3.5e-128
WP_111762437.1|1923301_1923994_-	lantibiotic protection ABC transporter ATP-binding subunit	NA	A0A2H4PQG7	Staphylococcus_phage	97.0	7.0e-120
WP_070005021.1|1925400_1925919_-	flavoprotein	NA	A0A2H4PQG9	Staphylococcus_phage	99.4	7.7e-95
WP_111762438.1|1925934_1927179_-	lanthionine synthetase C family protein	NA	A0A2H4PQH9	Staphylococcus_phage	88.2	7.7e-210
WP_111762439.1|1927171_1930165_-	lantibiotic dehydratase	NA	A0A2H4PQG8	Staphylococcus_phage	91.6	0.0e+00
WP_000416756.1|1930229_1930373_-	gallidermin/nisin family lantibiotic	NA	A0A2H4PQH4	Staphylococcus_phage	80.9	5.3e-14
WP_111762440.1|1931109_1931253_-	gallidermin/nisin family lantibiotic	NA	A0A2H4PQH4	Staphylococcus_phage	78.7	9.0e-14
WP_111762441.1|1931496_1932480_-	leukocidin/hemolysin toxin family protein	NA	A0A2H4PQH7	Staphylococcus_phage	97.6	1.1e-182
WP_111762442.1|1932481_1933417_-	bi-component leukocidin LukED subunit E	NA	A0A2H4PQI5	Staphylococcus_phage	98.7	1.7e-172
WP_001086053.1|1934334_1934790_+	hypothetical protein	NA	Q4ZCB9	Staphylococcus_virus	76.8	1.7e-61
WP_111762443.1|1934802_1935591_+	DUF1828 domain-containing protein	NA	A0A2H4PQI0	Staphylococcus_phage	95.0	1.2e-139
WP_111762444.1|1935768_1935990_+|transposase	transposase	transposase	A0A2H4PQU1	Staphylococcus_phage	71.4	1.8e-08
WP_111762445.1|1936507_1937263_-	staphylococcal enterotoxin type N	NA	A0A075M4C7	Staphylococcus_phage	40.5	2.5e-38
WP_111762446.1|1937301_1938087_-	staphylococcal enterotoxin type C1/U	NA	A0A097PAT7	Streptococcus_pyogenes_phage	42.7	3.8e-45
WP_111762447.1|1938240_1938969_-	staphylococcal enterotoxin type I	NA	A0A1X9H080	Staphylococcus_phage	39.2	3.9e-28
WP_111762448.1|1939003_1939723_-	staphylococcal enterotoxin type M	NA	A0A1X9H080	Staphylococcus_phage	35.2	6.8e-25
WP_145959550.1|1940005_1940788_-	staphylococcal enterotoxin type O	NA	A0A1X9H080	Staphylococcus_phage	37.9	8.7e-34
>prophage 9
NZ_LS483317	Staphylococcus aureus strain NCTC5663 chromosome 1	2818899	2074205	2088146	2818899	coat,terminase,integrase	Staphylococcus_phage(84.21%)	21	2071117:2071136	2086168:2086187
2071117:2071136	attL	TTTTACATCATTCCTGGCAT	NA	NA	NA	NA
WP_111762494.1|2074205_2074556_-	complement inhibitor SCIN family protein	NA	A7TWS0	Staphylococcus_phage	53.8	2.9e-21
WP_111762495.1|2074712_2075702_-	adenosine deaminase	NA	NA	NA	NA	NA
WP_111762496.1|2075890_2076460_-|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	96.8	2.5e-99
WP_001662732.1|2076456_2076798_-	hypothetical protein	NA	Q4ZE86	Staphylococcus_phage	97.3	4.2e-57
WP_111762497.1|2076800_2077328_-|coat	spore coat protein	coat	Q4ZE87	Staphylococcus_phage	94.9	5.1e-86
WP_000214169.1|2077380_2078034_-	hypothetical protein	NA	Q4ZE82	Staphylococcus_phage	100.0	9.0e-117
WP_001190614.1|2078064_2078406_-	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	100.0	2.9e-58
WP_107536095.1|2078941_2079583_-	pathogenicity island protein	NA	Q4ZE67	Staphylococcus_phage	95.8	1.2e-113
WP_111762498.1|2079584_2079857_-	pathogenicity island protein	NA	Q4ZE68	Staphylococcus_phage	90.0	4.8e-40
WP_000148373.1|2079843_2080647_-	bifunctional DNA primase/polymerase	NA	Q4ZE69	Staphylococcus_phage	97.4	3.1e-151
WP_031922538.1|2080822_2082439_-	hypothetical protein	NA	A0A1W6JPF4	Staphylococcus_phage	77.4	2.8e-244
WP_031922537.1|2082513_2082813_-	DUF1474 family protein	NA	A0A1W6JQH0	Staphylococcus_phage	57.0	3.9e-19
WP_002459645.1|2082813_2083197_-	hypothetical protein	NA	A0A1W6JQI7	Staphylococcus_phage	96.9	4.4e-63
WP_001231376.1|2083198_2083402_-	hypothetical protein	NA	A0A1W6JQF4	Staphylococcus_phage	98.5	2.0e-30
WP_000784891.1|2083386_2083542_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000481969.1|2083538_2083856_-	helix-turn-helix domain-containing protein	NA	A0A1W6JQE0	Staphylococcus_phage	97.1	3.5e-50
WP_111762499.1|2083871_2084072_-	helix-turn-helix transcriptional regulator	NA	A0A1W6JQE8	Staphylococcus_phage	76.7	2.4e-20
WP_111762500.1|2084234_2084912_+	helix-turn-helix transcriptional regulator	NA	A0A2H4JGT9	uncultured_Caudovirales_phage	31.4	6.9e-11
WP_111762501.1|2084928_2086101_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1W6JQD3	Staphylococcus_phage	97.4	1.5e-218
WP_000240648.1|2086169_2087786_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.9	1.2e-157
2086168:2086187	attR	TTTTACATCATTCCTGGCAT	NA	NA	NA	NA
WP_000917289.1|2087861_2088146_-	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
