assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900474695.1_41004_B01	NZ_LS483317	Staphylococcus aureus strain NCTC5663 chromosome 1	1	1109278-1109368	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	GAGCGCAAGCATAAAATTCCCTAACAAC	28	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA|45aa|down_0|NZ_LS483317.1_1109391_1109526_-,NA|432aa|down_1|NZ_LS483317.1_1109677_1110973_+	NA|224aa|up_9|NZ_LS483317.1_1097083_1097755_+	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ	NA|730aa|up_8|NZ_LS483317.1_1097747_1099937_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|495aa|up_7|NZ_LS483317.1_1099915_1101400_+	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|343aa|up_6|NZ_LS483317.1_1101392_1102421_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|up_5|NZ_LS483317.1_1102423_1102990_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|493aa|up_4|NZ_LS483317.1_1103004_1104483_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|416aa|up_3|NZ_LS483317.1_1104504_1105752_+	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional	NA|269aa|up_2|NZ_LS483317.1_1106018_1106825_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|467aa|up_1|NZ_LS483317.1_1106817_1108218_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|192aa|up_0|NZ_LS483317.1_1108232_1108808_-	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|45aa|down_0|NZ_LS483317.1_1109391_1109526_-	NA	NA|432aa|down_1|NZ_LS483317.1_1109677_1110973_+	NA	NA|391aa|down_2|NZ_LS483317.1_1111397_1112570_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|181aa|down_3|NZ_LS483317.1_1112623_1113166_+	pfam05128, DUF697, Domain of unknown function (DUF697)	NA|89aa|down_4|NZ_LS483317.1_1113319_1113586_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|573aa|down_5|NZ_LS483317.1_1113588_1115307_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|78aa|down_6|NZ_LS483317.1_1115543_1115777_-	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|454aa|down_7|NZ_LS483317.1_1115974_1117336_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|340aa|down_8|NZ_LS483317.1_1117332_1118352_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]	NA|221aa|down_9|NZ_LS483317.1_1118484_1119147_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
GCF_900474695.1_41004_B01	NZ_LS483317	Staphylococcus aureus strain NCTC5663 chromosome 1	2	1265912-1266005	2	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,WYL	Unclear	TAAGAAACAGTAATCAATAAATTGATAAGT	30	0	0	NA	NA	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|215aa|up_9|NZ_LS483317.1_1255722_1256367_+	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|214aa|up_8|NZ_LS483317.1_1256373_1257015_+	COG1564, THI80, Thiamine pyrophosphokinase [Coenzyme metabolism]	NA|63aa|up_7|NZ_LS483317.1_1257396_1257585_-	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|125aa|up_6|NZ_LS483317.1_1258027_1258402_+	COG1302, COG1302, Uncharacterized protein conserved in bacteria [Function unknown]	NA|549aa|up_5|NZ_LS483317.1_1258416_1260063_+	COG1461, COG1461, Predicted kinase related to dihydroxyacetone kinase [General function prediction only]	cas3|687aa|up_4|NZ_LS483317.1_1260252_1262313_+	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|191aa|up_3|NZ_LS483317.1_1262515_1263088_+	PRK04424, PRK04424, transcription factor FapR	NA|329aa|up_2|NZ_LS483317.1_1263092_1264079_+	PRK05331, PRK05331, phosphate acyltransferase PlsX	NA|309aa|up_1|NZ_LS483317.1_1264071_1264998_+	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]	NA|245aa|up_0|NZ_LS483317.1_1264990_1265725_+	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|78aa|down_0|NZ_LS483317.1_1266094_1266328_+	PRK00982, acpP, acyl carrier protein; Provisional	NA|244aa|down_1|NZ_LS483317.1_1266443_1267175_+	PRK00102, rnc, ribonuclease III; Reviewed	NA|1189aa|down_2|NZ_LS483317.1_1267321_1270888_+	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|417aa|down_3|NZ_LS483317.1_1270887_1272138_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|111aa|down_4|NZ_LS483317.1_1272124_1272457_+	PRK00118, PRK00118, putative DNA-binding protein; Validated	NA|456aa|down_5|NZ_LS483317.1_1272482_1273850_+	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|92aa|down_6|NZ_LS483317.1_1274191_1274467_+	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]	NA|168aa|down_7|NZ_LS483317.1_1274654_1275158_+	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|246aa|down_8|NZ_LS483317.1_1275157_1275895_+	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|117aa|down_9|NZ_LS483317.1_1275997_1276348_+	PRK05338, rplS, 50S ribosomal protein L19; Provisional
GCF_900474695.1_41004_B01	NZ_LS483317	Staphylococcus aureus strain NCTC5663 chromosome 1	3	2350009-2350090	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTCTACAGGCAATGCAAGTTGGGG	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|335aa|up_9|NZ_LS483317.1_2340030_2341035_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|up_8|NZ_LS483317.1_2341203_2341809_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|224aa|up_7|NZ_LS483317.1_2341809_2342481_-	COG4149, ModC, ABC-type molybdate transport system, permease component [Inorganic ion transport and metabolism]	NA|261aa|up_6|NZ_LS483317.1_2342494_2343277_-	cd13537, PBP2_YvgL_like, Substrate binding domain of putative molybdate-binding protein YvgL and similar proteins;the type 2 periplasmic binding protein fold	NA|266aa|up_5|NZ_LS483317.1_2343566_2344364_+	PRK00724, PRK00724, formate dehydrogenase accessory sulfurtransferase FdhD	NA|257aa|up_4|NZ_LS483317.1_2344535_2345306_-	pfam18467, DUF5613, Domain of unknown function (DUF5613)	NA|185aa|up_3|NZ_LS483317.1_2345377_2345932_-	COG1268, BioY, Uncharacterized conserved protein [General function prediction only]	NA|314aa|up_2|NZ_LS483317.1_2346052_2346994_-	cd02647, nuc_hydro_TvIAG, nuc_hydro_ TvIAG:  Nucleoside hydrolases similar to the Inosine-adenosine-guanosine-preferring nucleoside hydrolase from Trypanosoma vivax	NA|303aa|up_1|NZ_LS483317.1_2347392_2348301_-	cd01138, FeuA, Periplasmic binding protein FeuA	NA|385aa|up_0|NZ_LS483317.1_2348513_2349668_-	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|302aa|down_0|NZ_LS483317.1_2350172_2351078_-	COG4413, Utp, Urea transporter [Amino acid transport and metabolism]	NA|101aa|down_1|NZ_LS483317.1_2351337_2351640_+	PRK13241, ureA, urease subunit gamma; Provisional	NA|137aa|down_2|NZ_LS483317.1_2351653_2352064_+	PRK13201, ureB, urease subunit beta; Reviewed	NA|572aa|down_3|NZ_LS483317.1_2352060_2353776_+	PRK13207, ureC, urease subunit alpha; Reviewed	NA|151aa|down_4|NZ_LS483317.1_2353788_2354241_+	PRK13261, ureE, urease accessory protein UreE; Provisional	NA|230aa|down_5|NZ_LS483317.1_2354233_2354923_+	COG0830, UreF, Urease accessory protein UreF [Posttranslational modification, protein turnover, chaperones]	NA|205aa|down_6|NZ_LS483317.1_2354935_2355550_+	cd05540, UreG, urease accessory protein UreG	NA|279aa|down_7|NZ_LS483317.1_2355549_2356386_+	COG0829, UreH, Urease accessory protein UreH [Posttranslational modification, protein turnover, chaperones]	NA|116aa|down_8|NZ_LS483317.1_2356574_2356922_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|109aa|down_9|NZ_LS483317.1_2357349_2357676_-	pfam14470, bPH_3, Bacterial PH domain
GCF_900474695.1_41004_B01	NZ_LS483317	Staphylococcus aureus strain NCTC5663 chromosome 1	4	2608924-2609009	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCAACTTGCACATTATTGTAAGCTGACTTT	30	1	13	2608954-2608979|2608954-2608979|2608954-2608979|2608954-2608979|2608954-2608979|2608954-2608979|2608954-2608979|2608954-2608979|2608954-2608979|2608954-2608979|2608954-2608979|2608954-2608979|2608954-2608979	NZ_LS483317.1_1474040-1474065|NZ_LS483317.1_2504105-2504130|NZ_LS483317.1_270792-270767|NZ_LS483317.1_800618-800593|NZ_LS483317.1_800674-800649|NZ_LS483317.1_844711-844736|NZ_LS483317.1_883617-883642|NZ_LS483317.1_977966-977941|NZ_LS483317.1_1193398-1193373|NZ_LS483317.1_1276771-1276746|NZ_LS483317.1_1276827-1276802|NZ_LS483317.1_1678820-1678795|NZ_LS483317.1_2475010-2474985	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|244aa|up_2|NZ_LS483317.1_2606470_2607202_+,NA|57aa|down_0|NZ_LS483317.1_2609232_2609403_-,NA|36aa|down_1|NZ_LS483317.1_2609455_2609563_-,NA|68aa|down_5|NZ_LS483317.1_2612768_2612972_+	NA|145aa|up_9|NZ_LS483317.1_2600484_2600919_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|95aa|up_8|NZ_LS483317.1_2601144_2601429_+	COG2388, COG2388, Predicted acetyltransferase [General function prediction only]	NA|269aa|up_7|NZ_LS483317.1_2601603_2602410_+	COG2514, COG2514, Predicted ring-cleavage extradiol dioxygenase [General function prediction only]	NA|224aa|up_6|NZ_LS483317.1_2602528_2603200_-	cd02149, NfsB-like, nitroreductase similar to Escherichia coli NfsB	NA|331aa|up_5|NZ_LS483317.1_2603469_2604462_+	PRK12480, PRK12480, D-lactate dehydrogenase; Provisional	NA|267aa|up_4|NZ_LS483317.1_2604708_2605509_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|212aa|up_3|NZ_LS483317.1_2605829_2606465_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|244aa|up_2|NZ_LS483317.1_2606470_2607202_+	NA	NA|207aa|up_1|NZ_LS483317.1_2607362_2607983_-	COG3764, SrtA, Sortase (surface protein transpeptidase) [Cell envelope biogenesis, outer membrane]	NA|164aa|up_0|NZ_LS483317.1_2608176_2608668_+	COG1247, COG1247, Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]	NA|57aa|down_0|NZ_LS483317.1_2609232_2609403_-	NA	NA|36aa|down_1|NZ_LS483317.1_2609455_2609563_-	NA	NA|300aa|down_2|NZ_LS483317.1_2609581_2610481_-	TIGR00718, Probable_L-serine_dehydratase_alpha_chain, L-serine dehydratase, iron-sulfur-dependent, alpha subunit	NA|227aa|down_3|NZ_LS483317.1_2610494_2611175_-	COG1760, SdaA, L-serine deaminase [Amino acid transport and metabolism]	NA|348aa|down_4|NZ_LS483317.1_2611177_2612221_-	COG1299, FruA, Phosphotransferase system, fructose-specific IIC component [Carbohydrate transport and metabolism]	NA|68aa|down_5|NZ_LS483317.1_2612768_2612972_+	NA	NA|312aa|down_6|NZ_LS483317.1_2613154_2614090_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|323aa|down_7|NZ_LS483317.1_2614169_2615138_-	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|115aa|down_8|NZ_LS483317.1_2615270_2615615_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|137aa|down_9|NZ_LS483317.1_2615656_2616067_-	COG0824, FcbC, Predicted thioesterase [General function prediction only]
GCF_900474695.1_41004_B01	NZ_LS483317	Staphylococcus aureus strain NCTC5663 chromosome 1	5	2754718-2754897	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TGAGTCAGATACACTCGTTGAACC	24	0	0	NA	NA	NA	2	2	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|636aa|up_7|NZ_LS483317.1_2741197_2743105_-,NA|307aa|down_1|NZ_LS483317.1_2763630_2764551_+,NA|101aa|down_2|NZ_LS483317.1_2764537_2764840_+,NA|120aa|down_3|NZ_LS483317.1_2764989_2765349_+	NA|620aa|up_9|NZ_LS483317.1_2738342_2740202_+	PRK08581, PRK08581, amidase domain-containing protein	NA|187aa|up_8|NZ_LS483317.1_2740468_2741029_-	cd00431, cysteine_hydrolases, Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle	NA|636aa|up_7|NZ_LS483317.1_2741197_2743105_-	NA	NA|453aa|up_6|NZ_LS483317.1_2743338_2744697_-	TIGR02919, conserved_hypothetical_protein, accessory Sec system glycosyltransferase GtfB	NA|503aa|up_5|NZ_LS483317.1_2744689_2746198_-	TIGR02918, lipopolysaccharide_biosynthesis_protein, accessory Sec system glycosylation protein GtfA	NA|797aa|up_4|NZ_LS483317.1_2746215_2748606_-	TIGR03714, Protein_translocase_subunit_SecA_2, accessory Sec system translocase SecA2	NA|320aa|up_3|NZ_LS483317.1_2748595_2749555_-	TIGR03711, acc_sec_asp3, accessory Sec system protein Asp3	NA|523aa|up_2|NZ_LS483317.1_2749532_2751101_-	TIGR03712, acc_sec_asp2, accessory Sec system protein Asp2	NA|518aa|up_1|NZ_LS483317.1_2751090_2752644_-	TIGR03713, acc_sec_asp1, accessory Sec system protein Asp1	NA|404aa|up_0|NZ_LS483317.1_2752654_2753866_-	PRK12417, secY, preprotein translocase subunit SecY; Reviewed	NA|231aa|down_0|NZ_LS483317.1_2761599_2762292_-	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only]	NA|307aa|down_1|NZ_LS483317.1_2763630_2764551_+	NA	NA|101aa|down_2|NZ_LS483317.1_2764537_2764840_+	NA	NA|120aa|down_3|NZ_LS483317.1_2764989_2765349_+	NA	NA|204aa|down_4|NZ_LS483317.1_2765433_2766045_-	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only]	NA|159aa|down_5|NZ_LS483317.1_2766123_2766600_-	PRK05528, PRK05528, peptide-methionine (S)-S-oxide reductase	NA|167aa|down_6|NZ_LS483317.1_2766602_2767103_-	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|256aa|down_7|NZ_LS483317.1_2767337_2768105_-	COG4464, CapC, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|231aa|down_8|NZ_LS483317.1_2768101_2768794_-	cd05387, BY-kinase, bacterial tyrosine-kinase	NA|221aa|down_9|NZ_LS483317.1_2768810_2769473_-	COG3944, COG3944, Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]
