assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900474735.1_40871_F01	NZ_LS483316	Staphylococcus aureus strain NCTC13395 chromosome 1	1	397887-397987	1	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|70aa|up_8|NZ_LS483316.1_389459_389669_-,NA|128aa|up_6|NZ_LS483316.1_390493_390877_-,NA|34aa|up_0|NZ_LS483316.1_397111_397213_+,NA|221aa|down_1|NZ_LS483316.1_399077_399740_-,NA|179aa|down_7|NZ_LS483316.1_405831_406368_-	NA|84aa|up_9|NZ_LS483316.1_389169_389421_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|70aa|up_8|NZ_LS483316.1_389459_389669_-	NA	NA|194aa|up_7|NZ_LS483316.1_389846_390428_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_6|NZ_LS483316.1_390493_390877_-	NA	NA|209aa|up_5|NZ_LS483316.1_391131_391758_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|508aa|up_4|NZ_LS483316.1_392202_393726_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_3|NZ_LS483316.1_393741_394311_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_2|NZ_LS483316.1_394802_395558_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_1|NZ_LS483316.1_395638_397027_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|34aa|up_0|NZ_LS483316.1_397111_397213_+	NA	NA|319aa|down_0|NZ_LS483316.1_398003_398960_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|221aa|down_1|NZ_LS483316.1_399077_399740_-	NA	NA|136aa|down_2|NZ_LS483316.1_399882_400290_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_LS483316.1_400802_401381_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_LS483316.1_401380_402649_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_LS483316.1_402686_404153_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_LS483316.1_404177_405719_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NZ_LS483316.1_405831_406368_-	NA	NA|235aa|down_8|NZ_LS483316.1_406760_407465_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NZ_LS483316.1_407863_408136_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_900474735.1_40871_F01	NZ_LS483316	Staphylococcus aureus strain NCTC13395 chromosome 1	2	641134-641226	2	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	32	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|36aa|up_3|NZ_LS483316.1_637616_637724_+,NA|169aa|down_4|NZ_LS483316.1_644973_645480_+,NA|239aa|down_5|NZ_LS483316.1_645641_646358_+	NA|313aa|up_9|NZ_LS483316.1_631818_632757_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_8|NZ_LS483316.1_632967_633504_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_7|NZ_LS483316.1_633672_634149_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_6|NZ_LS483316.1_634188_635484_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_5|NZ_LS483316.1_635511_636033_+	pfam08741, YwhD, YwhD family	NA|337aa|up_4|NZ_LS483316.1_636531_637542_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|36aa|up_3|NZ_LS483316.1_637616_637724_+	NA	NA|139aa|up_2|NZ_LS483316.1_637816_638233_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_1|NZ_LS483316.1_638229_639891_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|up_0|NZ_LS483316.1_640279_640915_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|296aa|down_0|NZ_LS483316.1_641294_642182_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_1|NZ_LS483316.1_642329_643280_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|NZ_LS483316.1_643334_644054_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|NZ_LS483316.1_644037_644838_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|NZ_LS483316.1_644973_645480_+	NA	NA|239aa|down_5|NZ_LS483316.1_645641_646358_+	NA	NA|263aa|down_6|NZ_LS483316.1_646526_647315_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|NZ_LS483316.1_647565_647940_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|310aa|down_8|NZ_LS483316.1_648887_649817_-	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|75aa|down_9|NZ_LS483316.1_650011_650236_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)
GCF_900474735.1_40871_F01	NZ_LS483316	Staphylococcus aureus strain NCTC13395 chromosome 1	3	798386-798466	3	CRISPRCasFinder	no	cas3	csa3,cas3,DEDDh,DinG,WYL	Unclear	TTCTTTATGTTGGGGCCCCGCCAACT	26	1	8	798412-798440|798412-798440|798412-798440|798412-798440|798412-798440|798412-798440|798412-798440|798412-798440	NZ_LS483316.1_2826830-2826858|NZ_LS483316.1_359437-359409|NZ_LS483316.1_1812170-1812142|NZ_LS483316.1_849012-849040|NZ_LS483316.1_919130-919158|NZ_LS483316.1_1611581-1611609|NZ_LS483316.1_2023300-2023328|NZ_LS483316.1_2571716-2571688	NA	1	1	Unclear	csa3,cas3,DEDDh,DinG,WYL	NA|35aa|up_7|NZ_LS483316.1_789299_789404_+,NA|36aa|up_5|NZ_LS483316.1_790836_790944_+,NA	NA|191aa|up_9|NZ_LS483316.1_785740_786313_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_8|NZ_LS483316.1_786726_789258_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|35aa|up_7|NZ_LS483316.1_789299_789404_+	NA	NA|370aa|up_6|NZ_LS483316.1_789572_790683_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|36aa|up_5|NZ_LS483316.1_790836_790944_+	NA	NA|280aa|up_4|NZ_LS483316.1_791091_791931_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|NZ_LS483316.1_792104_792755_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|NZ_LS483316.1_792751_792988_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|NZ_LS483316.1_793256_795242_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|NZ_LS483316.1_795249_798096_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|280aa|down_0|NZ_LS483316.1_799641_800481_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_1|NZ_LS483316.1_800488_800974_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_2|NZ_LS483316.1_800981_802421_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_3|NZ_LS483316.1_802487_803423_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_4|NZ_LS483316.1_804302_805214_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_5|NZ_LS483316.1_805210_806206_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_6|NZ_LS483316.1_806315_807260_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_7|NZ_LS483316.1_807832_808420_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_8|NZ_LS483316.1_808662_809565_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_9|NZ_LS483316.1_810267_810897_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed
GCF_900474735.1_40871_F01	NZ_LS483316	Staphylococcus aureus strain NCTC13395 chromosome 1	4	803785-803870	4	CRISPRCasFinder	no	cas3	csa3,cas3,DEDDh,DinG,WYL	Unclear	CCAACTTGCACATTATTGTAAGCTGACTTT	30	1	6	803815-803840|803815-803840|803815-803840|803815-803840|803815-803840|803815-803840	NZ_LS483316.1_766831-766806|NZ_LS483316.1_1121441-1121416|NZ_LS483316.1_2826742-2826767|NZ_LS483316.1_2826798-2826823|NZ_LS483316.1_766887-766862|NZ_LS483316.1_899630-899605	NA	1	1	Unclear	csa3,cas3,DEDDh,DinG,WYL	NA|36aa|up_9|NZ_LS483316.1_790836_790944_+,NA	NA|36aa|up_9|NZ_LS483316.1_790836_790944_+	NA	NA|280aa|up_8|NZ_LS483316.1_791091_791931_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_7|NZ_LS483316.1_792104_792755_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_6|NZ_LS483316.1_792751_792988_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_5|NZ_LS483316.1_793256_795242_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_4|NZ_LS483316.1_795249_798096_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|280aa|up_3|NZ_LS483316.1_799641_800481_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NZ_LS483316.1_800488_800974_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NZ_LS483316.1_800981_802421_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|NZ_LS483316.1_802487_803423_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NZ_LS483316.1_804302_805214_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NZ_LS483316.1_805210_806206_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NZ_LS483316.1_806315_807260_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NZ_LS483316.1_807832_808420_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_4|NZ_LS483316.1_808662_809565_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_5|NZ_LS483316.1_810267_810897_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_6|NZ_LS483316.1_811716_812730_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_7|NZ_LS483316.1_812782_813793_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_8|NZ_LS483316.1_813931_815122_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_9|NZ_LS483316.1_815243_816005_+	PRK00042, tpiA, triosephosphate isomerase; Provisional
GCF_900474735.1_40871_F01	NZ_LS483316	Staphylococcus aureus strain NCTC13395 chromosome 1	5	848946-849027	5	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	2	848970-849003|848970-849003	NZ_LS483316.1_1327906-1327873|NZ_LS483316.1_1417060-1417093	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA,NA	NA|194aa|up_9|NZ_LS483316.1_842049_842631_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|206aa|up_8|NZ_LS483316.1_842703_843321_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_7|NZ_LS483316.1_843475_843970_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_6|NZ_LS483316.1_844368_844791_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_5|NZ_LS483316.1_844938_845655_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_4|NZ_LS483316.1_845737_846277_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_3|NZ_LS483316.1_846426_846747_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_2|NZ_LS483316.1_846890_847247_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_1|NZ_LS483316.1_847404_847785_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|293aa|up_0|NZ_LS483316.1_847963_848842_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_LS483316.1_849583_849970_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_LS483316.1_849962_850259_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_LS483316.1_850508_851534_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_LS483316.1_851526_852222_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_LS483316.1_852239_853061_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|NZ_LS483316.1_853414_853609_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|NZ_LS483316.1_853841_854693_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|NZ_LS483316.1_855020_855782_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|NZ_LS483316.1_855879_857187_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|417aa|down_9|NZ_LS483316.1_857292_858543_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCF_900474735.1_40871_F01	NZ_LS483316	Staphylococcus aureus strain NCTC13395 chromosome 1	6	1121246-1121432	1	CRT	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	GGCGGGGCCCCAACATAGA	19	3	30	1121265-1121301|1121265-1121301|1121265-1121301|1121265-1121301|1121265-1121301|1121265-1121301|1121321-1121357|1121321-1121357|1121321-1121357|1121321-1121357|1121321-1121357|1121321-1121357|1121321-1121357|1121321-1121357|1121321-1121357|1121321-1121357|1121321-1121357|1121321-1121357|1121377-1121413|1121377-1121413|1121377-1121413|1121377-1121413|1121377-1121413|1121377-1121413|1121377-1121413|1121377-1121413|1121377-1121413|1121377-1121413|1121377-1121413|1121377-1121413	NZ_LS483316.1_1812139-1812175|NZ_LS483316.1_849043-849007|NZ_LS483316.1_1611612-1611576|NZ_LS483316.1_2023331-2023295|NZ_LS483316.1_2571685-2571721|NZ_LS483316.1_2826861-2826825|NZ_LS483316.1_359292-359328|NZ_LS483316.1_803879-803843|NZ_LS483316.1_1018731-1018695|NZ_LS483316.1_1327832-1327868|NZ_LS483316.1_2012584-2012548|NZ_LS483316.1_1417134-1417098|NZ_LS483316.1_1611670-1611634|NZ_LS483316.1_2659900-2659864|NZ_LS483316.1_1117353-1117389|NZ_LS483316.1_1121433-1121469|NZ_LS483316.1_2012525-2012489|NZ_LS483316.1_2826806-2826770|NZ_LS483316.1_138543-138579|NZ_LS483316.1_640171-640207|NZ_LS483316.1_756332-756296|NZ_LS483316.1_757266-757302|NZ_LS483316.1_757322-757358|NZ_LS483316.1_803935-803899|NZ_LS483316.1_1327890-1327926|NZ_LS483316.1_1417076-1417040|NZ_LS483316.1_2014041-2014005|NZ_LS483316.1_1046770-1046734|NZ_LS483316.1_2546438-2546402|NZ_LS483316.1_1117409-1117445	NA	3	3	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|31aa|up_9|NZ_LS483316.1_1113900_1113993_-,NA|169aa|up_7|NZ_LS483316.1_1115025_1115532_+,NA|62aa|up_4|NZ_LS483316.1_1117613_1117799_-,NA|78aa|up_3|NZ_LS483316.1_1118420_1118654_-,NA|49aa|up_1|NZ_LS483316.1_1120762_1120909_+,NA|75aa|up_0|NZ_LS483316.1_1120865_1121090_+,NA|76aa|down_6|NZ_LS483316.1_1128445_1128673_+	NA|31aa|up_9|NZ_LS483316.1_1113900_1113993_-	NA	NA|134aa|up_8|NZ_LS483316.1_1113952_1114354_-	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|169aa|up_7|NZ_LS483316.1_1115025_1115532_+	NA	NA|166aa|up_6|NZ_LS483316.1_1115790_1116288_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|117aa|up_5|NZ_LS483316.1_1116441_1116792_+	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|62aa|up_4|NZ_LS483316.1_1117613_1117799_-	NA	NA|78aa|up_3|NZ_LS483316.1_1118420_1118654_-	NA	NA|320aa|up_2|NZ_LS483316.1_1119130_1120090_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|49aa|up_1|NZ_LS483316.1_1120762_1120909_+	NA	NA|75aa|up_0|NZ_LS483316.1_1120865_1121090_+	NA	NA|239aa|down_0|NZ_LS483316.1_1121646_1122363_-	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|242aa|down_1|NZ_LS483316.1_1122470_1123196_-	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|242aa|down_2|NZ_LS483316.1_1123290_1124016_-	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|334aa|down_3|NZ_LS483316.1_1124453_1125455_+	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|311aa|down_4|NZ_LS483316.1_1125477_1126410_+	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|519aa|down_5|NZ_LS483316.1_1126581_1128138_+	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|76aa|down_6|NZ_LS483316.1_1128445_1128673_+	NA	NA|316aa|down_7|NZ_LS483316.1_1128977_1129925_-	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family	NA|63aa|down_8|NZ_LS483316.1_1130173_1130362_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|45aa|down_9|NZ_LS483316.1_1131272_1131407_+	pfam05480, Staph_haemo, Staphylococcus haemolytic protein
GCF_900474735.1_40871_F01	NZ_LS483316	Staphylococcus aureus strain NCTC13395 chromosome 1	7	1812215-1812425	2	CRT	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	CAATAATGTGCAAGTTGGGGTAAGGGCCCCAACACAGANNN	41	3	23	1812253-1812273|1812312-1812331|1812312-1812331|1812312-1812331|1812312-1812331|1812312-1812331|1812312-1812331|1812312-1812331|1812312-1812331|1812312-1812331|1812312-1812331|1812312-1812331|1812312-1812331|1812312-1812331|1812312-1812331|1812312-1812331|1812312-1812331|1812312-1812331|1812312-1812331|1812312-1812331|1812312-1812331|1812312-1812331|1812370-1812387	NZ_LS483316.1_1812194-1812214|NZ_LS483316.1_138486-138505|NZ_LS483316.1_281683-281702|NZ_LS483316.1_359406-359425|NZ_LS483316.1_803993-803974|NZ_LS483316.1_804051-804032|NZ_LS483316.1_849043-849024|NZ_LS483316.1_919161-919142|NZ_LS483316.1_1046828-1046809|NZ_LS483316.1_1327774-1327793|NZ_LS483316.1_1417192-1417173|NZ_LS483316.1_1611612-1611593|NZ_LS483316.1_1812139-1812158|NZ_LS483316.1_2013982-2013963|NZ_LS483316.1_2571685-2571704|NZ_LS483316.1_2826861-2826842|NZ_LS483316.1_281738-281757|NZ_LS483316.1_811319-811300|NZ_LS483316.1_1377121-1377102|NZ_LS483316.1_1645579-1645560|NZ_LS483316.1_2023331-2023312|NZ_LS483316.1_771406-771425|NZ_LS483316.1_1812197-1812214	NA	3	3	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA,NA	NA|199aa|up_9|NZ_LS483316.1_1802733_1803330_-	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed	NA|286aa|up_8|NZ_LS483316.1_1803358_1804216_-	PRK13668, PRK13668, hypothetical protein; Provisional	NA|104aa|up_7|NZ_LS483316.1_1804315_1804627_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|359aa|up_6|NZ_LS483316.1_1804691_1805768_-	cd05656, M42_Frv, M42 Peptidase, endoglucanases	NA|104aa|up_5|NZ_LS483316.1_1805854_1806166_+	COG5584, COG5584, Predicted small secreted protein [Function unknown]	NA|281aa|up_4|NZ_LS483316.1_1806290_1807133_-	cd07728, YtnP-like_MBL-fold, Bacillus subtilis YtnP and related proteins; MBL-fold metallo hydrolase domain	NA|215aa|up_3|NZ_LS483316.1_1807602_1808247_-	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|264aa|up_2|NZ_LS483316.1_1808261_1809053_-	COG0510, ycfN, Thiamine kinase and related kinases [Coenzyme transport and metabolism]	NA|284aa|up_1|NZ_LS483316.1_1809602_1810454_-	TIGR01121, D-alanine_aminotransferase, D-amino acid aminotransferase	NA|470aa|up_0|NZ_LS483316.1_1810455_1811865_-	PRK07318, PRK07318, dipeptidase PepV; Reviewed	NA|141aa|down_0|NZ_LS483316.1_1812728_1813151_-	pfam12732, YtxH, YtxH-like protein	NA|232aa|down_1|NZ_LS483316.1_1813167_1813863_-	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|554aa|down_2|NZ_LS483316.1_1813859_1815521_-	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|423aa|down_3|NZ_LS483316.1_1815927_1817196_+	pfam03486, HI0933_like, HI0933-like protein	NA|2187aa|down_4|NZ_LS483316.1_1817312_1823873_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain	NA|104aa|down_5|NZ_LS483316.1_1824198_1824510_-	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|806aa|down_6|NZ_LS483316.1_1824531_1826949_-	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|391aa|down_7|NZ_LS483316.1_1827244_1828417_-	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|318aa|down_8|NZ_LS483316.1_1828526_1829480_+	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only]	NA|188aa|down_9|NZ_LS483316.1_1829476_1830040_+	pfam06962, rRNA_methylase, Putative rRNA methylase
GCF_900474735.1_40871_F01	NZ_LS483316	Staphylococcus aureus strain NCTC13395 chromosome 1	8	2255979-2256129	6	CRISPRCasFinder	no	csa3	csa3,cas3,DEDDh,DinG,WYL	Type I-A	AACTTTAGTTGTTAGGGGCTCTTATGCA	28	0	0	NA	NA	NA	2	2	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|77aa|up_5|NZ_LS483316.1_2250850_2251081_-,NA|364aa|up_0|NZ_LS483316.1_2254869_2255961_+,NA|35aa|down_0|NZ_LS483316.1_2256460_2256565_-,NA|31aa|down_2|NZ_LS483316.1_2258676_2258769_+	NA|237aa|up_9|NZ_LS483316.1_2246460_2247171_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_LS483316.1_2247291_2247735_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_LS483316.1_2247934_2248348_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_LS483316.1_2248805_2250179_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_LS483316.1_2250850_2251081_-	NA	NA|313aa|up_4|NZ_LS483316.1_2251111_2252050_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_LS483316.1_2252484_2253150_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_LS483316.1_2253301_2253622_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NZ_LS483316.1_2253623_2254604_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_LS483316.1_2254869_2255961_+	NA	NA|35aa|down_0|NZ_LS483316.1_2256460_2256565_-	NA	NA|379aa|down_1|NZ_LS483316.1_2257251_2258388_-	pfam02037, SAP, SAP domain	NA|31aa|down_2|NZ_LS483316.1_2258676_2258769_+	NA	NA|286aa|down_3|NZ_LS483316.1_2259473_2260331_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_4|NZ_LS483316.1_2260398_2261181_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_5|NZ_LS483316.1_2261412_2263218_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_6|NZ_LS483316.1_2263898_2265437_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_7|NZ_LS483316.1_2265471_2267604_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_8|NZ_LS483316.1_2267615_2268050_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_9|NZ_LS483316.1_2268049_2269156_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional
GCF_900474735.1_40871_F01	NZ_LS483316	Staphylococcus aureus strain NCTC13395 chromosome 1	9	2380141-2380334	3	CRT	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	TGTTGGGGCCCCGCCAACTTGCA	23	3	12	2380164-2380196|2380164-2380196|2380164-2380196|2380164-2380196|2380164-2380196|2380220-2380255|2380220-2380255|2380220-2380255|2380279-2380311|2380279-2380311|2380279-2380311|2380279-2380311	NZ_LS483316.1_803851-803883|NZ_LS483316.1_1327860-1327828|NZ_LS483316.1_1417106-1417138|NZ_LS483316.1_2012556-2012588|NZ_LS483316.1_2659872-2659904|NZ_LS483316.1_1812170-1812135|NZ_LS483316.1_1611581-1611616|NZ_LS483316.1_2023300-2023335|NZ_LS483316.1_803851-803883|NZ_LS483316.1_1327860-1327828|NZ_LS483316.1_2012556-2012588|NZ_LS483316.1_2659872-2659904	NA	3	3	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|55aa|up_9|NZ_LS483316.1_2370668_2370833_+,NA|106aa|up_8|NZ_LS483316.1_2371077_2371395_+,NA|84aa|up_5|NZ_LS483316.1_2376519_2376771_+,NA|57aa|up_0|NZ_LS483316.1_2379910_2380081_+,NA	NA|55aa|up_9|NZ_LS483316.1_2370668_2370833_+	NA	NA|106aa|up_8|NZ_LS483316.1_2371077_2371395_+	NA	NA|1056aa|up_7|NZ_LS483316.1_2371581_2374749_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_LS483316.1_2374865_2376131_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_LS483316.1_2376519_2376771_+	NA	NA|255aa|up_4|NZ_LS483316.1_2376762_2377527_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_LS483316.1_2377688_2378129_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_LS483316.1_2378121_2379333_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_LS483316.1_2379434_2379785_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NZ_LS483316.1_2379910_2380081_+	NA	NA|341aa|down_0|NZ_LS483316.1_2380475_2381498_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_LS483316.1_2381517_2382117_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_LS483316.1_2382123_2382357_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_LS483316.1_2382362_2382809_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_LS483316.1_2382822_2383308_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_LS483316.1_2383304_2384564_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_LS483316.1_2384626_2385121_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_LS483316.1_2385122_2385629_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_LS483316.1_2385659_2386664_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|224aa|down_9|NZ_LS483316.1_2387440_2388112_-	COG4149, ModC, ABC-type molybdate transport system, permease component [Inorganic ion transport and metabolism]
