assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900474795.1_41767_B01	NZ_LS483320	Streptococcus pyogenes strain NCTC5164 chromosome 1	1	119190-119423	1,1	PILER-CR,CRISPRCasFinder	no		cas3,DinG,csm6,cas2,cas4,cas7,cas8c,cas5,DEDDh,csa3	Orphan	AGAGTTAGATGGTGAAGAAGTCCCAGAAGTTCCAAGCGAGAGCTTAGAACC,CCATTAATGCCAGAGCTAGATGGTGAAGAAGTCCC	51,35	0	0	NA	NA	NA:NA	2,1	2	Orphan	cas3,DinG,csm6,cas2,cas4,cas7,cas8c,cas5,DEDDh,csa3	NA,NA|220aa|down_5|NZ_LS483320.1_131134_131794_-	NA|257aa|up_9|NZ_LS483320.1_109539_110310_-	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|356aa|up_8|NZ_LS483320.1_110357_111425_-	TIGR03107, Glutamyl_aminopeptidase, glutamyl aminopeptidase	NA|98aa|up_7|NZ_LS483320.1_111880_112174_+	pfam15513, DUF4651, Domain of unknown function (DUF4651)	NA|106aa|up_6|NZ_LS483320.1_112170_112488_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|209aa|up_5|NZ_LS483320.1_112505_113132_+	cd02796, tRNA_bind_bactPheRS, tRNA-binding-domain-containing prokaryotic phenylalanly tRNA synthetase (PheRS) beta chain	NA|132aa|up_4|NZ_LS483320.1_113282_113678_+	PRK07274, PRK07274, single-stranded DNA-binding protein; Provisional	NA|214aa|up_3|NZ_LS483320.1_113936_114578_-	COG1428, COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism]	NA|326aa|up_2|NZ_LS483320.1_114597_115575_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|291aa|up_1|NZ_LS483320.1_115561_116434_-	PRK00114, hslO, Hsp33 family molecular chaperone HslO	NA|498aa|up_0|NZ_LS483320.1_116580_118074_-	pfam08270, PRD_Mga, M protein trans-acting positive regulator (MGA) PRD domain	NA|572aa|down_0|NZ_LS483320.1_121371_123087_+	TIGR04226, Fimbrial_subunit_type_2, fimbrial isopeptide formation D2 domain	NA|311aa|down_1|NZ_LS483320.1_123173_124106_+	pfam17802, SpaA, Prealbumin-like fold domain	NA|296aa|down_2|NZ_LS483320.1_124083_124971_+	cd05827, Sortase_C, Sortase domain found in class C sortases	NA|286aa|down_3|NZ_LS483320.1_124972_125830_+	cd05827, Sortase_C, Sortase domain found in class C sortases	NA|1700aa|down_4|NZ_LS483320.1_125948_131048_+	COG4932, COG4932, Predicted outer membrane protein [Cell envelope biogenesis, outer membrane]	NA|220aa|down_5|NZ_LS483320.1_131134_131794_-	NA	NA|469aa|down_6|NZ_LS483320.1_132146_133553_+	COG2031, AtoE, Short chain fatty acids transporter [Lipid metabolism]	NA|304aa|down_7|NZ_LS483320.1_133621_134533_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|395aa|down_8|NZ_LS483320.1_134653_135838_+	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|220aa|down_9|NZ_LS483320.1_135849_136509_+	COG1788, AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism]
GCF_900474795.1_41767_B01	NZ_LS483320	Streptococcus pyogenes strain NCTC5164 chromosome 1	2	995747-995848	2	CRISPRCasFinder	no		cas3,DinG,csm6,cas2,cas4,cas7,cas8c,cas5,DEDDh,csa3	Orphan	AATAATTGGTATAGTCTAATTATA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,csm6,cas2,cas4,cas7,cas8c,cas5,DEDDh,csa3	NA,NA|262aa|down_6|NZ_LS483320.1_1003678_1004464_+,NA|63aa|down_8|NZ_LS483320.1_1005795_1005984_-	NA|83aa|up_9|NZ_LS483320.1_983463_983712_-	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|773aa|up_8|NZ_LS483320.1_984074_986393_-	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|441aa|up_7|NZ_LS483320.1_986922_988245_+	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism]	NA|412aa|up_6|NZ_LS483320.1_988364_989600_+	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|258aa|up_5|NZ_LS483320.1_989969_990743_-	pfam07373, CAMP_factor, CAMP factor (Cfa)	NA|279aa|up_4|NZ_LS483320.1_991111_991948_-	cd00996, PBP2_AatB_like, Polar amino acids-binding domain of ATP-binding cassette transporter-like systems that belong to the type 2 periplasmic binding fold protein superfamily	NA|210aa|up_3|NZ_LS483320.1_991963_992593_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|214aa|up_2|NZ_LS483320.1_992602_993244_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|112aa|up_1|NZ_LS483320.1_993350_993686_-	COG2824, PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]	NA|605aa|up_0|NZ_LS483320.1_993881_995696_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|186aa|down_0|NZ_LS483320.1_995871_996429_-	TIGR02227, Inactive_signal_peptidase_IA	NA|501aa|down_1|NZ_LS483320.1_996646_998149_-	PRK05826, PRK05826, pyruvate kinase; Provisional	NA|338aa|down_2|NZ_LS483320.1_998211_999225_-	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|1037aa|down_3|NZ_LS483320.1_999304_1002415_-	PRK07279, dnaE, DNA polymerase III DnaE; Reviewed	NA|124aa|down_4|NZ_LS483320.1_1002599_1002971_+	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|233aa|down_5|NZ_LS483320.1_1002970_1003669_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|262aa|down_6|NZ_LS483320.1_1003678_1004464_+	NA	NA|205aa|down_7|NZ_LS483320.1_1004590_1005205_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|63aa|down_8|NZ_LS483320.1_1005795_1005984_-	NA	NA|267aa|down_9|NZ_LS483320.1_1006221_1007022_+	pfam13930, Endonuclea_NS_2, DNA/RNA non-specific endonuclease
GCF_900474795.1_41767_B01	NZ_LS483320	Streptococcus pyogenes strain NCTC5164 chromosome 1	3	1309752-1309982	1,2,3	CRT,PILER-CR,CRISPRCasFinder	no	cas2,cas4,cas7,cas8c,cas5	cas3,DinG,csm6,cas2,cas4,cas7,cas8c,cas5,DEDDh,csa3	 Type I-U?,Type I-U,Type I-C	TATTTCAATCCACTCACCCATGAAGGGTGAGAC,ATTTCAATCCACTCACCCATGAAGGGTGAGAC,TTTCAATCCACTCACCCATGAAGGGTGAGAC	33,32,31	5	7	1309785-1309818|1309852-1309884|1309852-1309884|1309786-1309820|1309853-1309886|1309853-1309886|1309785-1309820	NZ_LS483320.1_1233056-1233023|NZ_LS483320.1_1052244-1052276|NZ_LS483320.1_1011284-1011316|NZ_LS483320.1_1233056-1233022|NZ_LS483320.1_1052244-1052277|NZ_LS483320.1_1011284-1011317|NZ_LS483320.1_1233056-1233021	I-C:I-C:I-C	3,3,3	3	TypeI-U?,TypeI-U,TypeI-C	cas3,DinG,csm6,cas2,cas4,cas7,cas8c,cas5,DEDDh,csa3	NA,NA|183aa|down_6|NZ_LS483320.1_1320956_1321505_-	NA|412aa|up_9|NZ_LS483320.1_1299678_1300914_-	PRK01388, PRK01388, arginine deiminase; Provisional	NA|227aa|up_8|NZ_LS483320.1_1301187_1301868_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|158aa|up_7|NZ_LS483320.1_1302009_1302483_+	COG1438, ArgR, Arginine repressor [Transcription]	NA|239aa|up_6|NZ_LS483320.1_1302648_1303365_-	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only]	NA|360aa|up_5|NZ_LS483320.1_1303387_1304467_-	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown]	NA|578aa|up_4|NZ_LS483320.1_1304539_1306273_-	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|247aa|up_3|NZ_LS483320.1_1306269_1307010_-	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|369aa|up_2|NZ_LS483320.1_1307097_1308204_-	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|208aa|up_1|NZ_LS483320.1_1308246_1308870_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|237aa|up_0|NZ_LS483320.1_1308882_1309593_-	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	cas2|98aa|down_0|NZ_LS483320.1_1310130_1310424_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas4|225aa|down_1|NZ_LS483320.1_1311445_1312120_-	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense    mechanisms]	cas7|283aa|down_2|NZ_LS483320.1_1312121_1312970_-	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas8c|632aa|down_3|NZ_LS483320.1_1312974_1314870_-	TIGR01863, CRISPR-associated_protein_CT1133_family, CRISPR-associated protein Cas8c/Csd1, subtype I-C/DVULG	cas5|243aa|down_4|NZ_LS483320.1_1314869_1315598_-	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	NA|884aa|down_5|NZ_LS483320.1_1318291_1320943_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|183aa|down_6|NZ_LS483320.1_1320956_1321505_-	NA	NA|48aa|down_7|NZ_LS483320.1_1321722_1321866_-	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|132aa|down_8|NZ_LS483320.1_1322189_1322585_-	PRK07758, PRK07758, hypothetical protein; Provisional	NA|85aa|down_9|NZ_LS483320.1_1322605_1322860_-	pfam08930, DUF1912, Domain of unknown function (DUF1912)
