assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900474845.1_41906_C02	NZ_LS483331	Streptococcus pyogenes strain NCTC12057 chromosome 1	1	798809-799027	1	CRT	no		cas3,DinG,csm6,RT,DEDDh,csa3	Orphan	TGTTTTGAATGGTCCCAAAAC	21	0	0	NA	NA	II-A	3	3	Orphan	cas3,DinG,csm6,RT,DEDDh,csa3	NA|214aa|up_4|NZ_LS483331.1_794648_795290_+,NA	NA|264aa|up_9|NZ_LS483331.1_789070_789862_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|448aa|up_8|NZ_LS483331.1_789861_791205_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|284aa|up_7|NZ_LS483331.1_791311_792163_+	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|319aa|up_6|NZ_LS483331.1_792159_793116_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|452aa|up_5|NZ_LS483331.1_793169_794525_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|214aa|up_4|NZ_LS483331.1_794648_795290_+	NA	NA|377aa|up_3|NZ_LS483331.1_795352_796483_+	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|251aa|up_2|NZ_LS483331.1_796492_797245_+	COG3884, FatA, Acyl-ACP thioesterase [Lipid metabolism]	NA|255aa|up_1|NZ_LS483331.1_797244_798009_+	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|211aa|up_0|NZ_LS483331.1_798008_798641_+	COG4478, COG4478, Predicted membrane protein [Function unknown]	NA|611aa|down_0|NZ_LS483331.1_799670_801503_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|146aa|down_1|NZ_LS483331.1_803384_803822_+	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|340aa|down_2|NZ_LS483331.1_803951_804971_+	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|142aa|down_3|NZ_LS483331.1_805177_805603_+	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|164aa|down_4|NZ_LS483331.1_805629_806121_+	COG3444, COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism]	NA|270aa|down_5|NZ_LS483331.1_806137_806947_+	COG3715, ManY, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]	NA|276aa|down_6|NZ_LS483331.1_806943_807771_+	COG3716, ManZ, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID [Carbohydrate transport and metabolism]	NA|550aa|down_7|NZ_LS483331.1_807906_809556_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|263aa|down_8|NZ_LS483331.1_809559_810348_+	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|349aa|down_9|NZ_LS483331.1_810341_811388_+	cd13546, PBP2_BitB, Substrate binding domain of a putative iron transporter BitB, a member of the type 2 periplasmic binding fold superfamily
GCF_900474845.1_41906_C02	NZ_LS483331	Streptococcus pyogenes strain NCTC12057 chromosome 1	2	1286382-1286475	1	CRISPRCasFinder	no	cas3	cas3,DinG,csm6,RT,DEDDh,csa3	Unclear	AATCCACTCACCCGTGAAGGGTGAGAC	27	0	0	NA	NA	NA	1	1	Unclear	cas3,DinG,csm6,RT,DEDDh,csa3	NA,NA	NA|227aa|up_9|NZ_LS483331.1_1275649_1276330_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|158aa|up_8|NZ_LS483331.1_1276471_1276945_+	COG1438, ArgR, Arginine repressor [Transcription]	NA|360aa|up_7|NZ_LS483331.1_1277841_1278921_-	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown]	NA|578aa|up_6|NZ_LS483331.1_1278993_1280727_-	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|247aa|up_5|NZ_LS483331.1_1280723_1281464_-	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|369aa|up_4|NZ_LS483331.1_1281551_1282658_-	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|208aa|up_3|NZ_LS483331.1_1282700_1283324_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|237aa|up_2|NZ_LS483331.1_1283336_1284047_-	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	NA|311aa|up_1|NZ_LS483331.1_1284267_1285200_-	cd12827, EcCorA_ZntB-like_u2, uncharacterized bacterial subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB family	NA|320aa|up_0|NZ_LS483331.1_1285291_1286251_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	cas3|416aa|down_0|NZ_LS483331.1_1286825_1288073_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|883aa|down_1|NZ_LS483331.1_1288226_1290875_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|188aa|down_2|NZ_LS483331.1_1290876_1291440_-	pfam13238, AAA_18, AAA domain	NA|132aa|down_3|NZ_LS483331.1_1292040_1292436_-	PRK07758, PRK07758, hypothetical protein; Provisional	NA|85aa|down_4|NZ_LS483331.1_1292453_1292708_-	pfam08930, DUF1912, Domain of unknown function (DUF1912)	NA|251aa|down_5|NZ_LS483331.1_1293184_1293937_+	PRK13397, PRK13397, 3-deoxy-7-phosphoheptulonate synthase; Provisional	NA|358aa|down_6|NZ_LS483331.1_1293992_1295066_+	TIGR01357, 3-dehydroquinate_synthase, 3-dehydroquinate synthase	NA|102aa|down_7|NZ_LS483331.1_1295501_1295807_-	cd06983, cupin_dsy2733, Desulfitobacterium hafniense dsy2733 and related proteins, cupin domain	NA|113aa|down_8|NZ_LS483331.1_1295808_1296147_-	cd02230, cupin_HP0902-like, Helicobacter pylori HP0902 and related proteins, cupin domain	NA|252aa|down_9|NZ_LS483331.1_1296199_1296955_-	pfam13649, Methyltransf_25, Methyltransferase domain
