assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900474855.1_41825_E01	NZ_LS483330	Streptococcus pyogenes strain NCTC8328 chromosome 1	1	863971-864071	1	CRISPRCasFinder	no		cas3,DEDDh,csn2,cas2,cas9,csm6,DinG,csa3	Orphan	TATAATTAGACTATACCAATTTT	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csn2,cas2,cas9,csm6,DinG,csa3	NA|262aa|up_6|NZ_LS483330.1_855354_856140_-,NA	NA|755aa|up_9|NZ_LS483330.1_850725_852990_+	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins	NA|207aa|up_8|NZ_LS483330.1_853246_853867_-	pfam12978, DUF3862, Domain of Unknown Function with PDB structure (DUF3862)	NA|205aa|up_7|NZ_LS483330.1_854607_855222_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|262aa|up_6|NZ_LS483330.1_855354_856140_-	NA	NA|233aa|up_5|NZ_LS483330.1_856149_856848_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|124aa|up_4|NZ_LS483330.1_856847_857219_-	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|1037aa|up_3|NZ_LS483330.1_857403_860514_+	PRK07279, dnaE, DNA polymerase III DnaE; Reviewed	NA|338aa|up_2|NZ_LS483330.1_860593_861607_+	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|501aa|up_1|NZ_LS483330.1_861669_863172_+	PRK05826, PRK05826, pyruvate kinase; Provisional	NA|186aa|up_0|NZ_LS483330.1_863389_863947_+	TIGR02227, Inactive_signal_peptidase_IA	NA|605aa|down_0|NZ_LS483330.1_864122_865937_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|112aa|down_1|NZ_LS483330.1_866132_866468_+	COG2824, PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]	NA|214aa|down_2|NZ_LS483330.1_866574_867216_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|210aa|down_3|NZ_LS483330.1_867225_867855_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|279aa|down_4|NZ_LS483330.1_867870_868707_+	cd00996, PBP2_AatB_like, Polar amino acids-binding domain of ATP-binding cassette transporter-like systems that belong to the type 2 periplasmic binding fold protein superfamily	NA|258aa|down_5|NZ_LS483330.1_869076_869850_+	pfam07373, CAMP_factor, CAMP factor (Cfa)	NA|412aa|down_6|NZ_LS483330.1_870219_871455_-	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|441aa|down_7|NZ_LS483330.1_871574_872897_-	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism]	NA|773aa|down_8|NZ_LS483330.1_873427_875746_+	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|83aa|down_9|NZ_LS483330.1_876110_876359_+	COG2261, COG2261, Predicted membrane protein [Function unknown]
GCF_900474855.1_41825_E01	NZ_LS483330	Streptococcus pyogenes strain NCTC8328 chromosome 1	2	1063504-1063869	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas9	cas3,DEDDh,csn2,cas2,cas9,csm6,DinG,csa3	Type II-B,Type II-A,Type II-C	GTTTTGGGACCATTCAAAACAGCATAGCTCTAAAAC,GTTTTGGGACCATTCAAAACAGCATAGCTCTAAAAC,GTTTTGGGACCATTCAAAACAGCATAGCTCTAAAAC	36,36,36	1	1	1063540-1063569	NZ_LS483330.1_737052-737023	II-A:II-A:II-A	5,5,4	5	TypeII-B,TypeII-A,TypeII-C	cas3,DEDDh,csn2,cas2,cas9,csm6,DinG,csa3	NA,NA|214aa|down_7|NZ_LS483330.1_1073765_1074407_-	NA|550aa|up_9|NZ_LS483330.1_1053505_1055155_-	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|276aa|up_8|NZ_LS483330.1_1055290_1056118_-	COG3716, ManZ, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID [Carbohydrate transport and metabolism]	NA|270aa|up_7|NZ_LS483330.1_1056114_1056924_-	COG3715, ManY, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]	NA|164aa|up_6|NZ_LS483330.1_1056940_1057432_-	COG3444, COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism]	NA|142aa|up_5|NZ_LS483330.1_1057450_1057876_-	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|340aa|up_4|NZ_LS483330.1_1058082_1059102_-	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|146aa|up_3|NZ_LS483330.1_1059231_1059669_-	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|367aa|up_2|NZ_LS483330.1_1059855_1060956_-	PRK12678, PRK12678, transcription termination factor Rho; Provisional	NA|611aa|up_1|NZ_LS483330.1_1061422_1063255_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|53aa|up_0|NZ_LS483330.1_1063324_1063483_-	PTZ00093, PTZ00093, nucleoside diphosphate kinase, cytosolic; Provisional	csn2|221aa|down_0|NZ_LS483330.1_1063971_1064634_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|114aa|down_1|NZ_LS483330.1_1064623_1064965_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas9|1369aa|down_2|NZ_LS483330.1_1065830_1069937_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|211aa|down_3|NZ_LS483330.1_1070414_1071047_-	COG4478, COG4478, Predicted membrane protein [Function unknown]	NA|255aa|down_4|NZ_LS483330.1_1071046_1071811_-	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|251aa|down_5|NZ_LS483330.1_1071810_1072563_-	COG3884, FatA, Acyl-ACP thioesterase [Lipid metabolism]	NA|377aa|down_6|NZ_LS483330.1_1072572_1073703_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|214aa|down_7|NZ_LS483330.1_1073765_1074407_-	NA	NA|452aa|down_8|NZ_LS483330.1_1074530_1075886_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|319aa|down_9|NZ_LS483330.1_1075939_1076896_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_900474855.1_41825_E01	NZ_LS483330	Streptococcus pyogenes strain NCTC8328 chromosome 1	3	1655063-1655130	3	CRISPRCasFinder	no		cas3,DEDDh,csn2,cas2,cas9,csm6,DinG,csa3	Orphan	GCTCCGGTGTCACCTTTTTCACC	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csn2,cas2,cas9,csm6,DinG,csa3	NA,NA|97aa|down_8|NZ_LS483330.1_1663881_1664172_-	NA|250aa|up_9|NZ_LS483330.1_1640103_1640853_-	PRK14830, PRK14830, undecaprenyl pyrophosphate synthase; Provisional	NA|122aa|up_8|NZ_LS483330.1_1641071_1641437_-	PRK06531, yajC, preprotein translocase subunit YajC; Validated	NA|125aa|up_7|NZ_LS483330.1_1641552_1641927_-	TIGR01295, Pediocin_PA-1_biosynthesis_protein_PedC, bacteriocin transport accessory protein, putative	NA|1166aa|up_6|NZ_LS483330.1_1642041_1645539_-	TIGR02102, alkaline_amylopullulanase, pullulanase, extracellular, Gram-positive	NA|538aa|up_5|NZ_LS483330.1_1645736_1647350_-	cd11333, AmyAc_SI_OligoGlu_DGase, Alpha amylase catalytic domain found in Sucrose isomerases, oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), dextran glucosidase (also called glucan 1,6-alpha-glucosidase), and related proteins	NA|378aa|up_4|NZ_LS483330.1_1647478_1648612_-	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA|283aa|up_3|NZ_LS483330.1_1648909_1649758_-	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|441aa|up_2|NZ_LS483330.1_1650097_1651420_+	pfam02821, Staphylokinase, Staphylokinase/Streptokinase family	NA|148aa|up_1|NZ_LS483330.1_1651517_1651961_-	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional	NA|740aa|up_0|NZ_LS483330.1_1651975_1654195_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|161aa|down_0|NZ_LS483330.1_1656123_1656606_+	PRK02551, PRK02551, flavoprotein NrdI; Provisional	NA|273aa|down_1|NZ_LS483330.1_1656998_1657817_-	cd09079, RgfB-like, Streptococcus agalactiae RgfB, part of a putative two component signal transduction system, and related proteins	NA|729aa|down_2|NZ_LS483330.1_1657899_1660086_-	TIGR02003, PTS_system_glucose-specific_IIBC_component, PTS system, IIBC component	NA|250aa|down_3|NZ_LS483330.1_1660442_1661192_-	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|318aa|down_4|NZ_LS483330.1_1661191_1662145_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|157aa|down_5|NZ_LS483330.1_1662215_1662686_-	pfam11217, DUF3013, Protein of unknown function (DUF3013)	NA|70aa|down_6|NZ_LS483330.1_1662750_1662960_-	pfam13310, Virulence_RhuM, Virulence protein RhuM family	NA|248aa|down_7|NZ_LS483330.1_1663150_1663894_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|97aa|down_8|NZ_LS483330.1_1663881_1664172_-	NA	NA|451aa|down_9|NZ_LS483330.1_1664226_1665578_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed
