assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900474875.1_41851_B01	NZ_LS483328	Streptococcus equi subsp. zooepidemicus strain NCTC12090 chromosome 1	1	574658-576477	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas5,cas8c,cas7,cas4,cas1,cas2	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,RT,WYL,DinG,csm6,csn2,cas9	Type I-C,Type I-U, Type I-U?	GTCTCGCCCCATACGGGCGAGTGGATTGAAAT,GTCTCGCCNNNNANGGGCGAGTGGATTGAAAT,GGGCGAGTGGATTGAAAT	32,32,18	1	1	575685-575718	NZ_LS483328.1_1000307-1000340	I-C:NA:NA	27,27,26	27	TypeI-C,TypeI-U,TypeI-U?	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,RT,WYL,DinG,csm6,csn2,cas9	NA|135aa|up_9|NZ_LS483328.1_563422_563827_+,NA	NA|135aa|up_9|NZ_LS483328.1_563422_563827_+	NA	NA|130aa|up_8|NZ_LS483328.1_563870_564260_+	CHL00206, ycf2, Ycf2; Provisional	NA|108aa|up_7|NZ_LS483328.1_564909_565233_+	pfam15597, Imm59, Immunity protein 59	cas3|818aa|up_6|NZ_LS483328.1_565850_568304_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|240aa|up_5|NZ_LS483328.1_569058_569778_+	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas8c|628aa|up_4|NZ_LS483328.1_569777_571661_+	cd09642, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas7|283aa|up_3|NZ_LS483328.1_571661_572510_+	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas4|224aa|up_2|NZ_LS483328.1_572511_573183_+	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense    mechanisms]	cas1|342aa|up_1|NZ_LS483328.1_573179_574205_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|98aa|up_0|NZ_LS483328.1_574215_574509_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|237aa|down_0|NZ_LS483328.1_576880_577591_+	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	NA|217aa|down_1|NZ_LS483328.1_577604_578255_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|371aa|down_2|NZ_LS483328.1_578272_579385_+	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|247aa|down_3|NZ_LS483328.1_579652_580393_+	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|573aa|down_4|NZ_LS483328.1_580389_582108_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|363aa|down_5|NZ_LS483328.1_582147_583236_+	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown]	NA|235aa|down_6|NZ_LS483328.1_583250_583955_+	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only]	NA|163aa|down_7|NZ_LS483328.1_584214_584703_+	cd04335, PrdX_deacylase, This CD includes bacterial (Agrobacterium tumefaciens and Caulobacter crescentus ProX, and Clostridium sticklandii PrdX) and eukaryotic (Plasmodium falciparum N-terminal ProRS editing domain) sequences	NA|158aa|down_8|NZ_LS483328.1_585213_585687_-	COG1438, ArgR, Arginine repressor [Transcription]	NA|227aa|down_9|NZ_LS483328.1_585827_586508_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
GCF_900474875.1_41851_B01	NZ_LS483328	Streptococcus equi subsp. zooepidemicus strain NCTC12090 chromosome 1	2	905554-905663	2	CRISPRCasFinder	no		cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,RT,WYL,DinG,csm6,csn2,cas9	Orphan	CTGACTTGATGACAGCTTATACTAAAA	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,RT,WYL,DinG,csm6,csn2,cas9	NA|183aa|up_3|NZ_LS483328.1_899301_899850_-,NA|152aa|up_1|NZ_LS483328.1_900129_900585_-,NA|714aa|down_5|NZ_LS483328.1_909827_911969_+	NA|198aa|up_9|NZ_LS483328.1_890909_891503_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|657aa|up_8|NZ_LS483328.1_891571_893542_+	pfam05738, Cna_B, Cna protein B-type domain	NA|479aa|up_7|NZ_LS483328.1_893556_894993_+	pfam16569, GramPos_pilinBB, Gram-positive pilin backbone subunit 2, Cna-B-like domain	NA|270aa|up_6|NZ_LS483328.1_895071_895881_+	cd05827, Sortase_C, Sortase domain found in class C sortases	NA|538aa|up_5|NZ_LS483328.1_896192_897806_+	pfam09028, Mac-1, Mac 1	NA|411aa|up_4|NZ_LS483328.1_897890_899123_+	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|183aa|up_3|NZ_LS483328.1_899301_899850_-	NA	NA|96aa|up_2|NZ_LS483328.1_899842_900130_-	cd18253, BTB_POZ_KLHL24_KRIP6, BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in Kelch-like protein 24 (KLHL24)	NA|152aa|up_1|NZ_LS483328.1_900129_900585_-	NA	NA|1241aa|up_0|NZ_LS483328.1_901692_905415_+	TIGR02102, alkaline_amylopullulanase, pullulanase, extracellular, Gram-positive	NA|180aa|down_0|NZ_LS483328.1_905703_906243_+	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription]	NA|212aa|down_1|NZ_LS483328.1_906232_906868_+	pfam13490, zf-HC2, Putative zinc-finger	NA|232aa|down_2|NZ_LS483328.1_906995_907691_+	cd07750, PolyPPase_VTC_like, Polyphosphate(polyP) polymerase domain of yeast vacuolar transport chaperone (VTC) proteins VTC-2, -3 and- 4, and similar proteins	NA|226aa|down_3|NZ_LS483328.1_907704_908382_+	pfam16316, DUF4956, Domain of unknown function (DUF4956)	NA|478aa|down_4|NZ_LS483328.1_908387_909821_+	pfam08757, CotH, CotH kinase protein	NA|714aa|down_5|NZ_LS483328.1_909827_911969_+	NA	NA|467aa|down_6|NZ_LS483328.1_912109_913510_+	cd06423, CESA_like, CESA_like is  the cellulose synthase superfamily	NA|1074aa|down_7|NZ_LS483328.1_913720_916942_+	TIGR02774, putative_ATP-dependent_exonuclease_subunit_B, ATP-dependent nuclease subunit B	NA|1215aa|down_8|NZ_LS483328.1_916931_920576_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|372aa|down_9|NZ_LS483328.1_920841_921957_+	PRK07324, PRK07324, transaminase; Validated
GCF_900474875.1_41851_B01	NZ_LS483328	Streptococcus equi subsp. zooepidemicus strain NCTC12090 chromosome 1	3	1475101-1475400	3,2,2	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1,cas9	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,RT,WYL,DinG,csm6,csn2,cas9	Type II-B,Type II-A,Type II-C	GTTTTGGAACCATTCAATACAGCATAACTCTAAAAC,GTTTTGGAACCATTCAATACAGCATAACTCTAAAAC,GTTTTGGAACCATTCAATACAGCATAACTCTAAAAC	36,36,36	0	0	NA	NA	II-A,II-B:II-A,II-B:II-A,II-B	4,4,3	4	TypeII-B,TypeII-A,TypeII-C	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,RT,WYL,DinG,csm6,csn2,cas9	NA,NA|196aa|down_4|NZ_LS483328.1_1482556_1483144_-,NA|59aa|down_5|NZ_LS483328.1_1483183_1483360_-,NA|153aa|down_6|NZ_LS483328.1_1483507_1483966_-,NA|141aa|down_7|NZ_LS483328.1_1485127_1485550_-	NA|434aa|up_9|NZ_LS483328.1_1461001_1462303_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|270aa|up_8|NZ_LS483328.1_1462527_1463337_+	PRK10513, PRK10513, sugar phosphate phosphatase; Provisional	NA|405aa|up_7|NZ_LS483328.1_1463336_1464551_+	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|412aa|up_6|NZ_LS483328.1_1464550_1465786_+	pfam02388, FemAB, FemAB family	NA|253aa|up_5|NZ_LS483328.1_1466024_1466783_-	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|399aa|up_4|NZ_LS483328.1_1467048_1468245_-	PRK00049, PRK00049, elongation factor Tu; Reviewed	NA|1049aa|up_3|NZ_LS483328.1_1469193_1472340_+	pfam03272, Mucin_bdg, Putative mucin or carbohydrate-binding module	NA|363aa|up_2|NZ_LS483328.1_1472629_1473718_-	pfam13800, Sigma_reg_N, Sigma factor regulator N-terminal	NA|157aa|up_1|NZ_LS483328.1_1473701_1474172_-	TIGR02950, RNA_polymerase_ECF-type_sigma_factor, RNA polymerase sigma factor, SigM family	NA|70aa|up_0|NZ_LS483328.1_1474528_1474738_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	csn2|226aa|down_0|NZ_LS483328.1_1475675_1476353_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|115aa|down_1|NZ_LS483328.1_1476342_1476687_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|290aa|down_2|NZ_LS483328.1_1476683_1477553_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1349aa|down_3|NZ_LS483328.1_1477552_1481599_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|196aa|down_4|NZ_LS483328.1_1482556_1483144_-	NA	NA|59aa|down_5|NZ_LS483328.1_1483183_1483360_-	NA	NA|153aa|down_6|NZ_LS483328.1_1483507_1483966_-	NA	NA|141aa|down_7|NZ_LS483328.1_1485127_1485550_-	NA	NA|448aa|down_8|NZ_LS483328.1_1488179_1489522_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|302aa|down_9|NZ_LS483328.1_1489629_1490535_-	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]
GCF_900474875.1_41851_B01	NZ_LS483328	Streptococcus equi subsp. zooepidemicus strain NCTC12090 chromosome 1	4	1948486-1948636	3	PILER-CR	no		cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,RT,WYL,DinG,csm6,csn2,cas9	Orphan	TTATCTGCTAAATCTTTTGATACTG	25	0	0	NA	NA	NA	2	2	Orphan	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,RT,WYL,DinG,csm6,csn2,cas9	NA|422aa|up_2|NZ_LS483328.1_1943400_1944666_+,NA	NA|265aa|up_9|NZ_LS483328.1_1936039_1936834_-	pfam01148, CTP_transf_1, Cytidylyltransferase family	NA|250aa|up_8|NZ_LS483328.1_1936843_1937593_-	PRK14830, PRK14830, undecaprenyl pyrophosphate synthase; Provisional	NA|120aa|up_7|NZ_LS483328.1_1937766_1938126_-	PRK06531, yajC, preprotein translocase subunit YajC; Validated	NA|121aa|up_6|NZ_LS483328.1_1938239_1938602_-	TIGR01295, Pediocin_PA-1_biosynthesis_protein_PedC, bacteriocin transport accessory protein, putative	NA|540aa|up_5|NZ_LS483328.1_1938710_1940330_-	cd11333, AmyAc_SI_OligoGlu_DGase, Alpha amylase catalytic domain found in Sucrose isomerases, oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), dextran glucosidase (also called glucan 1,6-alpha-glucosidase), and related proteins	NA|378aa|up_4|NZ_LS483328.1_1940514_1941648_-	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA|283aa|up_3|NZ_LS483328.1_1941797_1942646_-	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|422aa|up_2|NZ_LS483328.1_1943400_1944666_+	NA	NA|148aa|up_1|NZ_LS483328.1_1944792_1945236_-	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional	NA|740aa|up_0|NZ_LS483328.1_1945250_1947470_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|395aa|down_0|NZ_LS483328.1_1949567_1950752_+	TIGR04094, AraC_family_transcriptional_regulator, YSIRK-targeted surface antigen transcriptional regulator	NA|153aa|down_1|NZ_LS483328.1_1950961_1951420_+	PRK02551, PRK02551, flavoprotein NrdI; Provisional	NA|274aa|down_2|NZ_LS483328.1_1952441_1953263_-	cd09079, RgfB-like, Streptococcus agalactiae RgfB, part of a putative two component signal transduction system, and related proteins	NA|729aa|down_3|NZ_LS483328.1_1953340_1955527_-	TIGR02003, PTS_system_glucose-specific_IIBC_component, PTS system, IIBC component	NA|335aa|down_4|NZ_LS483328.1_1955824_1956829_-	cd06294, PBP1_MalR-like, ligand-binding domain of maltose transcription regulator MalR which is a member of the LacI-GalR family repressors	NA|249aa|down_5|NZ_LS483328.1_1957077_1957824_-	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|318aa|down_6|NZ_LS483328.1_1957823_1958777_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|848aa|down_7|NZ_LS483328.1_1959339_1961883_+	TIGR01363, pneumococcal_histidine_triad_A_protein, streptococcal histidine triad protein	NA|143aa|down_8|NZ_LS483328.1_1962080_1962509_-	cd04682, Nudix_Hydrolase_23, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|115aa|down_9|NZ_LS483328.1_1962528_1962873_-	cd06555, ASCH_PF0470_like, ASC-1 homology domain, subfamily similar to Pyrococcus furiosus Pf0470
