The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LS483332	Streptococcus pyogenes strain NCTC12696 chromosome 1	1845052	36636	48939	1845052		Synechococcus_phage(28.57%)	8	NA	NA
WP_038432701.1|36636_40362_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	26.9	1.3e-39
WP_038432703.1|40522_41977_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.7	3.7e-54
WP_014407190.1|42004_43027_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A0E3FGG1	Synechococcus_phage	41.1	1.2e-62
WP_002986700.1|43194_43749_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	36.1	2.4e-25
WP_038432705.1|43921_45469_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	E3SNU8	Prochlorococcus_phage	52.4	3.4e-45
WP_038432708.1|45527_46652_-	SH3 domain-containing protein	NA	F8HGP2	Streptococcus_phage	28.6	7.7e-07
WP_038432711.1|46904_48170_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_023079042.1|48447_48939_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	43.1	1.4e-18
>prophage 2
NZ_LS483332	Streptococcus pyogenes strain NCTC12696 chromosome 1	1845052	326696	424170	1845052	transposase,bacteriocin,tRNA,protease	Streptococcus_phage(20.69%)	99	NA	NA
WP_010921930.1|326696_327332_+	dTMP kinase	NA	M1PSC7	Streptococcus_phage	63.4	1.2e-65
WP_038432816.1|327349_328225_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	44.8	6.3e-65
WP_038432817.1|328243_328483_+	Tpl protein	NA	NA	NA	NA	NA
WP_002985838.1|328886_329210_+	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	59.4	1.3e-28
WP_002985836.1|329214_330078_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	75.0	1.7e-115
WP_002985833.1|330104_330497_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038432821.1|330543_331173_-	copper homeostasis protein CutC	NA	NA	NA	NA	NA
WP_038432822.1|331471_331828_+	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	65.0	1.1e-39
WP_021340916.1|331901_332729_-	exodeoxyribonuclease III	NA	M1PSC0	Streptococcus_phage	79.9	1.7e-128
WP_012560476.1|332962_334144_+	L-lactate oxidase	NA	NA	NA	NA	NA
WP_038432823.1|334409_339353_+|protease	CXC chemokine-degrading serine protease SpyCEP	protease	NA	NA	NA	NA
WP_038432979.1|340122_340830_+	DUF1275 domain-containing protein	NA	NA	NA	NA	NA
WP_038432824.1|341072_343070_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	35.0	1.3e-86
WP_023611737.1|343565_344579_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	R4TBI6	Mycobacterium_phage	52.7	5.5e-97
WP_038432825.1|344582_345071_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	R4JF54	Bacillus_phage	37.5	1.0e-11
WP_038432826.1|345037_347218_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	43.2	9.5e-171
WP_038432827.1|347423_348176_-	ADP-ribosyltransferase	NA	NA	NA	NA	NA
WP_051904305.1|348635_349238_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038432828.1|349513_349765_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038432829.1|349858_350491_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002990848.1|351001_351970_-	DUF3644 domain-containing protein	NA	A0A0N9RUA4	Staphylococcus_phage	52.3	1.2e-88
WP_002990844.1|352605_352842_+	DUF2829 domain-containing protein	NA	NA	NA	NA	NA
WP_021340581.1|352834_353533_+	3-oxoacyl-ACP reductase	NA	A0A0N9R355	Chrysochromulina_ericina_virus	25.2	1.2e-10
WP_038432830.1|353600_354560_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_002993065.1|354892_356230_+	MFS transporter	NA	NA	NA	NA	NA
WP_038432832.1|356402_357785_+	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA	A0A2K9L4K9	Tupanvirus	36.0	8.5e-32
WP_002990829.1|357815_358370_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_021340729.1|358369_358621_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010921957.1|358640_359336_+	5'-methylthioadenosine/adenosylhomocysteine nucleosidase	NA	NA	NA	NA	NA
WP_038432834.1|359486_359828_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038432836.1|359926_360574_-	metal-dependent transcriptional regulator	NA	NA	NA	NA	NA
WP_038432837.1|360719_361652_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_038432839.1|361715_362441_+	metal ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	32.6	1.8e-17
WP_011017448.1|362441_363296_+	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_038432840.1|363443_364250_-	peptidylprolyl isomerase	NA	A0A2H4UTF4	Bodo_saltans_virus	36.6	1.5e-20
WP_038432841.1|364466_366872_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	50.5	3.8e-88
WP_030126115.1|366941_367295_-	DUF3397 domain-containing protein	NA	NA	NA	NA	NA
WP_002990800.1|367538_367964_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_002985768.1|368069_368759_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_002985765.1|369081_369810_+	UMP kinase	NA	NA	NA	NA	NA
WP_002985763.1|369838_370396_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_023610041.1|370504_371362_+	S1 RNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_002990794.1|371434_371944_+	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_002985757.1|371940_372156_+	YozE family protein	NA	NA	NA	NA	NA
WP_023610050.1|372311_373493_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A0E3XB61	Gordonia_phage	39.6	2.1e-15
WP_010921966.1|373806_375579_+	oleate hydratase	NA	NA	NA	NA	NA
WP_002990786.1|375737_376790_+	PhoH family protein	NA	W8D063	Erwinia_phage	50.0	1.2e-46
WP_009880369.1|376835_377411_+	uracil-DNA glycosylase family protein	NA	NA	NA	NA	NA
WP_032467023.1|377569_378067_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_002985746.1|378047_378455_+	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_002985743.1|378574_379471_+	GTPase Era	NA	NA	NA	NA	NA
WP_038432842.1|379491_379968_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_014635333.1|381129_381576_-	ATP-binding cassette domain-containing protein	NA	F2Y302	Organic_Lake_phycodnavirus	36.0	4.1e-12
WP_011528336.1|381798_382509_-|bacteriocin	bacteriocin ABC transporter	bacteriocin	NA	NA	NA	NA
WP_002994577.1|382613_382850_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_002994580.1|383147_383372_+|bacteriocin	ComC/BlpC family leader-containing pheromone/bacteriocin	bacteriocin	NA	NA	NA	NA
WP_002994581.1|383349_383526_+	hypothetical protein	NA	NA	NA	NA	NA
WP_072135613.1|383769_384132_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_028797129.1|384742_384970_+|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
WP_002994587.1|385018_385336_+	hypothetical protein	NA	NA	NA	NA	NA
WP_020833317.1|385401_385683_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_009880536.1|385826_386012_+|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_002987929.1|386325_386541_+|transposase	transposase	transposase	U5P429	Shigella_phage	45.5	7.0e-10
WP_002992578.1|388483_389233_+	response regulator transcription factor	NA	A0A1V0E029	Clostridioides_phage	28.0	2.1e-21
WP_014635339.1|389233_390568_+	GHKL domain-containing protein	NA	NA	NA	NA	NA
WP_011017462.1|390715_390841_-|bacteriocin	ComC/BlpC family leader-containing pheromone/bacteriocin	bacteriocin	NA	NA	NA	NA
WP_014635340.1|390917_392282_-|bacteriocin	bacteriocin secretion accessory protein	bacteriocin	NA	NA	NA	NA
WP_038432843.1|392292_394446_-	peptide cleavage/export ABC transporter	NA	W8CYL7	Bacillus_phage	28.3	5.7e-43
WP_002994504.1|395771_396017_+|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
WP_002987564.1|396031_396214_+|bacteriocin	class IIb bacteriocin, lactobin A/cerein 7B family	bacteriocin	NA	NA	NA	NA
WP_012560514.1|397408_397636_+|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
WP_003060803.1|397648_397849_+|bacteriocin	class IIb bacteriocin, lactobin A/cerein 7B family	bacteriocin	NA	NA	NA	NA
WP_011054252.1|398387_398669_+	hypothetical protein	NA	NA	NA	NA	NA
WP_032467019.1|398862_399264_+	hypothetical protein	NA	NA	NA	NA	NA
WP_032462998.1|399514_400585_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014635342.1|400677_401076_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023605037.1|401423_401693_-	quorum-sensing system protein StcA	NA	NA	NA	NA	NA
WP_128650799.1|402606_402675_-	peptide pheromone SHP2	NA	NA	NA	NA	NA
WP_002990747.1|402763_403630_+	Rgg/GadR/MutR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002990742.1|403801_404629_+	DNA-formamidopyrimidine glycosylase	NA	A0A127AWE5	Bacillus_phage	27.5	5.1e-16
WP_002994141.1|404625_405219_+	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_002994144.1|405408_406911_+	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	41.2	6.7e-75
WP_002994146.1|407032_408226_+	multidrug efflux MFS transporter	NA	NA	NA	NA	NA
WP_002990729.1|408222_408369_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_002985700.1|408414_408651_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_076707645.1|408744_411078_+	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	39.8	8.8e-90
WP_002994152.1|411080_411548_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	57.0	5.7e-41
WP_010921981.1|411553_412273_+	glutaminyl-peptide cyclotransferase	NA	NA	NA	NA	NA
WP_002994169.1|412389_413037_-	pyroglutamyl-peptidase I	NA	NA	NA	NA	NA
WP_038432846.1|413086_414013_-	DUF979 family protein	NA	NA	NA	NA	NA
WP_011017476.1|414012_414696_-	DUF969 domain-containing protein	NA	NA	NA	NA	NA
WP_032464862.1|414906_415833_-	glycosyltransferase family 2 protein	NA	V5USA4	Oenococcus_phage	47.5	3.4e-77
WP_020904973.1|415977_416355_-	VOC family protein	NA	NA	NA	NA	NA
WP_002985684.1|416365_417031_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_002985682.1|417079_418165_-	aminopeptidase P family protein	NA	NA	NA	NA	NA
WP_002985680.1|418338_419340_+	catabolite control protein A	NA	C6ZCU4	Enterobacteria_phage	28.5	6.1e-24
WP_002985678.1|419470_420469_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_002994187.1|420470_421805_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_002985672.1|422226_424170_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	38.7	1.0e-120
>prophage 3
NZ_LS483332	Streptococcus pyogenes strain NCTC12696 chromosome 1	1845052	622263	629663	1845052		Streptococcus_phage(66.67%)	6	NA	NA
WP_050580611.1|622263_624474_-	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	69.2	2.9e-268
WP_023609837.1|624581_625745_+	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	64.9	7.6e-143
WP_002985140.1|625741_626428_+	type I 3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	68.9	7.0e-88
WP_002990262.1|626521_627688_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.8	4.5e-34
WP_002992643.1|627748_628090_+	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	41.1	5.9e-19
WP_002992646.1|628310_629663_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	23.8	1.0e-29
>prophage 4
NZ_LS483332	Streptococcus pyogenes strain NCTC12696 chromosome 1	1845052	632878	697505	1845052	transposase,tRNA,protease	Bacillus_phage(16.67%)	60	NA	NA
WP_002985121.1|632878_634093_+|tRNA	tRNA 4-thiouridine(8) synthase ThiI	tRNA	NA	NA	NA	NA
WP_011017643.1|634130_635423_+	CapA family protein	NA	A0A2H4JC87	uncultured_Caudovirales_phage	30.8	2.9e-34
WP_002985116.1|635636_635951_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_002985112.1|635962_636289_+|protease	ribosomal-processing cysteine protease Prp	protease	NA	NA	NA	NA
WP_002985110.1|636316_636610_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_038432896.1|636961_637876_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_038432898.1|637872_638331_+	signal peptidase II	NA	NA	NA	NA	NA
WP_002985094.1|638320_639211_+	RluA family pseudouridine synthase	NA	A0A2H4UV25	Bodo_saltans_virus	25.3	3.6e-07
WP_002985093.1|639605_640127_+	bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR	NA	NA	NA	NA	NA
WP_004218945.1|640142_641402_+	uracil transporter	NA	Q9KX94	Enterobacteria_phage	36.2	2.7e-61
WP_023609852.1|641462_642398_+	aspartate carbamoyltransferase catalytic subunit	NA	M1HGA5	Paramecium_bursaria_Chlorella_virus	32.6	3.0e-25
WP_002985087.1|642441_643524_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	36.9	4.7e-62
WP_011054357.1|643769_646946_+	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_011528494.1|647151_648423_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_002985080.1|648422_649133_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.5	1.7e-36
WP_010922149.1|649144_650365_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010922150.1|650618_652352_+	glycerophosphoryl diester phosphodiesterase membrane domain-containing protein	NA	NA	NA	NA	NA
WP_002985074.1|652478_652751_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_002985072.1|652760_653000_+	KH domain-containing protein	NA	NA	NA	NA	NA
WP_023605073.1|653935_656977_+	leucine-rich repeat protein	NA	NA	NA	NA	NA
WP_011054362.1|656996_657398_+	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_021733790.1|657577_658453_-	cation transporter	NA	NA	NA	NA	NA
WP_014635400.1|658588_659110_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002994772.1|659324_659843_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_011888986.1|659832_660564_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_021733179.1|660563_661556_+	NAD(P)/FAD-dependent oxidoreductase	NA	Q9JRK7	Streptococcus_phage	54.9	8.2e-29
WP_000564846.1|661725_662859_+|transposase	ISAs1-like element IS1548 family transposase	transposase	NA	NA	NA	NA
WP_162472286.1|662842_662968_+	exfoliative toxin	NA	NA	NA	NA	NA
WP_038432903.1|663058_664117_+	PTS transporter subunit IIC	NA	NA	NA	NA	NA
WP_014635402.1|664129_665053_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_021733178.1|665308_666022_+	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	32.1	2.5e-19
WP_002992553.1|666018_666930_+	1-phosphofructokinase	NA	NA	NA	NA	NA
WP_023605075.1|666926_668873_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_010922159.1|668965_669565_+	glycoside hydrolase family 73 protein	NA	A0A249Y0X5	Enterococcus_phage	33.8	3.6e-11
WP_002990206.1|669716_670424_+	glycoside hydrolase family 73 protein	NA	Q332B8	Clostridium_botulinum_C_phage	36.4	1.9e-11
WP_148180940.1|670995_671361_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014635407.1|671380_672406_-|protease	igG-degrading protease	protease	NA	NA	NA	NA
WP_002985011.1|673313_673694_+	DUF1149 family protein	NA	NA	NA	NA	NA
WP_011054370.1|673693_674542_+	DegV family protein	NA	NA	NA	NA	NA
WP_002990193.1|674666_675875_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	45.0	5.3e-38
WP_002990191.1|675871_677749_+	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	31.7	3.9e-64
WP_107114784.1|677771_677930_-|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_002990188.1|678638_679049_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	30.6	6.9e-06
WP_023080173.1|679130_681143_-	5'-nucleotidase C-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_031488355.1|681362_682013_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
WP_002984985.1|682015_682684_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	28.8	2.3e-19
WP_002993949.1|682692_683925_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_002984974.1|684218_685097_+	mevalonate kinase	NA	NA	NA	NA	NA
WP_002984972.1|685078_686023_+	diphosphomevalonate decarboxylase	NA	NA	NA	NA	NA
WP_021299363.1|686015_687023_+	phosphomevalonate kinase	NA	NA	NA	NA	NA
WP_010922169.1|687015_688005_+	type 2 isopentenyl-diphosphate Delta-isomerase	NA	NA	NA	NA	NA
WP_010922170.1|688234_689512_-	hydroxymethylglutaryl-CoA reductase, degradative	NA	NA	NA	NA	NA
WP_038432910.1|689498_690674_-	hydroxymethylglutaryl-CoA synthase	NA	NA	NA	NA	NA
WP_011017679.1|690882_691722_+	thymidylate synthase	NA	U5J9N5	Bacillus_phage	53.2	1.7e-83
WP_002984955.1|691801_692299_+	dihydrofolate reductase	NA	W5QU76	Bacillus_phage	34.4	8.6e-11
WP_002990165.1|692318_692489_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009880296.1|692618_693848_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	60.5	3.0e-137
WP_038432912.1|693857_694457_+	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA	NA
WP_002984942.1|694604_695348_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038432914.1|695405_697505_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	39.2	4.3e-120
>prophage 5
NZ_LS483332	Streptococcus pyogenes strain NCTC12696 chromosome 1	1845052	1001494	1032833	1845052	integrase,transposase,protease	Bacillus_phage(20.0%)	29	999778:999793	1018627:1018642
999778:999793	attL	CTTGCCAATACGAACA	NA	NA	NA	NA
WP_168417191.1|1001494_1002836_+|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	48.7	2.0e-62
WP_038432370.1|1003136_1004009_-	carboxylating nicotinate-nucleotide diphosphorylase	NA	NA	NA	NA	NA
WP_002984130.1|1004232_1005543_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
WP_011284472.1|1005620_1005914_+|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_009880536.1|1006057_1006243_+|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_080284464.1|1006300_1006516_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	U5P429	Shigella_phage	50.7	8.8e-13
WP_014635546.1|1006555_1006669_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_011017915.1|1006685_1007417_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_011017916.1|1007531_1007897_+	thioesterase family protein	NA	NA	NA	NA	NA
WP_014407647.1|1008016_1009237_-	MFS transporter	NA	NA	NA	NA	NA
WP_002995506.1|1009610_1011095_+	DUF1846 domain-containing protein	NA	NA	NA	NA	NA
WP_002984115.1|1011199_1011601_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_032466998.1|1012615_1014007_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	F5CA72	Streptococcus_phi-m46.1-like_phage	98.9	1.7e-261
WP_002984109.1|1014055_1015507_-	LCP family protein	NA	NA	NA	NA	NA
WP_002989310.1|1015714_1016206_-	shikimate kinase	NA	NA	NA	NA	NA
WP_009880589.1|1016198_1017482_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_023609958.1|1017592_1018558_-	YihY/virulence factor BrkB family protein	NA	NA	NA	NA	NA
WP_002984100.1|1018559_1019420_-	methionyl aminopeptidase	NA	NA	NA	NA	NA
1018627:1018642	attR	TGTTCGTATTGGCAAG	NA	NA	NA	NA
WP_002989302.1|1019435_1020719_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_002984095.1|1020727_1021270_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_038432372.1|1021507_1022413_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
WP_002989295.1|1022770_1024030_-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_002989292.1|1024203_1025400_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	65.4	4.5e-138
WP_038432373.1|1025936_1028294_-	pneumococcal-type histidine triad protein	NA	NA	NA	NA	NA
WP_002984078.1|1028497_1029439_+	bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor	NA	NA	NA	NA	NA
WP_162472283.1|1029413_1029617_-	DUF3272 family protein	NA	NA	NA	NA	NA
WP_023079397.1|1029711_1031382_-	DNA polymerase III subunit gamma/tau	NA	E7DN81	Pneumococcus_phage	40.6	3.9e-47
WP_038432374.1|1031381_1031879_-	GAF domain-containing protein	NA	NA	NA	NA	NA
WP_002992609.1|1032023_1032833_+|protease	PrsW family intramembrane metalloprotease	protease	NA	NA	NA	NA
>prophage 6
NZ_LS483332	Streptococcus pyogenes strain NCTC12696 chromosome 1	1845052	1046844	1136147	1845052	portal,terminase,protease,transposase,integrase,tail,capsid,holin,head,tRNA	Streptococcus_phage(61.19%)	99	1089255:1089274	1133520:1133539
WP_002995750.1|1046844_1047540_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_002995753.1|1047558_1048320_-	DUF3169 family protein	NA	NA	NA	NA	NA
WP_002989220.1|1048316_1048532_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_038432382.1|1048892_1051511_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	34.1	1.1e-61
WP_000564846.1|1051992_1053126_-|transposase	ISAs1-like element IS1548 family transposase	transposase	NA	NA	NA	NA
WP_020837342.1|1053223_1054279_-	peptidylprolyl isomerase PrsA	NA	NA	NA	NA	NA
WP_020837344.1|1054341_1055049_-	O-methyltransferase	NA	A0A2P1JQT7	Mycobacterium_phage	27.2	2.6e-08
WP_002995765.1|1055114_1056311_-	OFA family MFS transporter	NA	NA	NA	NA	NA
WP_020837346.1|1056686_1058492_-	oligoendopeptidase F	NA	NA	NA	NA	NA
WP_002983995.1|1058504_1059467_-	competence protein CoiA	NA	NA	NA	NA	NA
WP_002995774.1|1059762_1060479_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_002995779.1|1060597_1061302_-	glucosamine-6-phosphate deaminase	NA	NA	NA	NA	NA
WP_002995782.1|1061503_1062532_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_002983986.1|1062538_1063759_+	DUF3114 domain-containing protein	NA	NA	NA	NA	NA
WP_002995785.1|1063872_1064463_-	serine hydrolase	NA	NA	NA	NA	NA
WP_002983979.1|1064687_1064921_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002983977.1|1065087_1065693_-	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	53.2	1.8e-58
WP_011054659.1|1065789_1066830_-	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
WP_023610110.1|1066900_1069144_-	DNA internalization-related competence protein ComEC/Rec2	NA	M1PSD2	Streptococcus_phage	59.2	1.8e-55
WP_002983967.1|1069124_1069787_-	ComEA family DNA-binding protein	NA	NA	NA	NA	NA
WP_002989170.1|1069986_1070727_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_011284941.1|1070766_1071621_+|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	tRNA	NA	NA	NA	NA
WP_011017953.1|1071610_1071889_+	GIY-YIG nuclease family protein	NA	W8W2G4	Invertebrate_iridovirus	36.0	7.9e-06
WP_038432386.1|1071912_1073913_-	potassium transporter Kup	NA	M1IBC2	Acanthocystis_turfacea_Chlorella_virus	33.8	3.8e-65
WP_023610131.1|1074039_1075659_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	36.5	1.9e-59
WP_038432388.1|1075965_1077510_-	peptide chain release factor 3	NA	A0A1B0RXH7	Streptococcus_phage	29.3	4.8e-36
WP_002983946.1|1077747_1078443_-	TIGR02206 family membrane protein	NA	NA	NA	NA	NA
WP_010922441.1|1078522_1079914_-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	NA	NA	NA	NA	NA
WP_023610118.1|1080104_1081151_-	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
WP_002983939.1|1081251_1081848_-	recombination protein RecR	NA	NA	NA	NA	NA
WP_014635570.1|1082646_1083426_-	formate/nitrite transporter family protein	NA	NA	NA	NA	NA
WP_002989140.1|1083549_1084092_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002983930.1|1084252_1084774_-	transcription repressor NadR	NA	NA	NA	NA	NA
WP_002983928.1|1084881_1085577_-	phosphoglycerate mutase	NA	NA	NA	NA	NA
WP_021299339.1|1085815_1086751_+	dihydroorotate oxidase	NA	A0A1V0SH91	Hokovirus	45.1	4.6e-66
WP_020837373.1|1087050_1088913_-	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	33.8	5.4e-90
1089255:1089274	attL	AATTATTTAACAGCGTCTTT	NA	NA	NA	NA
WP_011017964.1|1089443_1089626_-	hypothetical protein	NA	A3F673	Streptococcus_phage	76.7	1.4e-19
WP_011054727.1|1089971_1090547_-	hypothetical protein	NA	Q938J0	Temperate_phage	100.0	1.7e-111
WP_038432391.1|1091022_1091802_-	streptococcal pyrogenic exotoxin SpeK	NA	Q938J1	Temperate_phage	99.6	1.6e-144
WP_011054729.1|1092105_1092972_-	DUF334 domain-containing protein	NA	Q938J2	Temperate_phage	100.0	3.7e-134
WP_011017840.1|1092959_1093484_-	DUF4065 domain-containing protein	NA	Q938J3	Temperate_phage	100.0	4.0e-99
WP_014411848.1|1093623_1094832_-	glucosaminidase domain-containing protein	NA	Q938J4	Temperate_phage	86.8	8.6e-214
WP_003058873.1|1094947_1095175_-|holin	phage holin	holin	A7J2B3	Streptococcus_phage	100.0	2.0e-31
WP_002987582.1|1095171_1095447_-	hypothetical protein	NA	A7J2B2	Streptococcus_phage	100.0	2.6e-41
WP_023610893.1|1095456_1096095_-	hypothetical protein	NA	A3F662	Streptococcus_phage	53.7	1.2e-44
WP_014411850.1|1096097_1096526_-	DUF1617 family protein	NA	A3F661	Streptococcus_phage	86.5	1.7e-63
WP_014411851.1|1096537_1098424_-	gp58-like family protein	NA	Q938J9	Temperate_phage	86.5	1.3e-203
WP_014411852.1|1098436_1099459_-	hyaluronoglucosaminidase	NA	Q938K0	Temperate_phage	91.7	1.2e-168
WP_014411853.1|1099455_1101600_-|tail	phage tail protein	tail	Q938K1	Temperate_phage	93.3	0.0e+00
WP_014411854.1|1101596_1102304_-|tail	phage tail family protein	tail	Q938K2	Temperate_phage	71.1	1.7e-92
WP_014411855.1|1102303_1106227_-|tail	phage tail tape measure protein	tail	J7KDT4	Streptococcus_phage	48.7	1.9e-238
WP_014411856.1|1106239_1106407_-	hypothetical protein	NA	J7KBS0	Streptococcus_phage	87.3	2.9e-19
WP_014411857.1|1106436_1106763_-	hypothetical protein	NA	J7KK85	Streptococcus_phage	73.1	6.0e-37
WP_014411858.1|1106815_1107424_-|tail	phage major tail protein	tail	J7KKC8	Streptococcus_phage	70.5	2.3e-74
WP_002985347.1|1107440_1107866_-	hypothetical protein	NA	J7KBZ9	Streptococcus_phage	85.1	5.0e-68
WP_002985349.1|1107862_1108240_-	HK97 gp10 family phage protein	NA	J7KDM3	Streptococcus_phage	72.8	1.4e-45
WP_002985351.1|1108236_1108584_-|head	phage head closure protein	head	J7KJ42	Streptococcus_phage	85.5	1.5e-49
WP_014411860.1|1108580_1108883_-|head,tail	phage head-tail connector protein	head,tail	J7KC36	Streptococcus_phage	87.0	6.1e-44
WP_023610896.1|1108885_1109032_-	hypothetical protein	NA	J7KH04	Streptococcus_phage	77.5	4.0e-09
WP_014411862.1|1109018_1110221_-|capsid	phage major capsid protein	capsid	J7KJ82	Streptococcus_phage	64.4	6.0e-135
WP_023610933.1|1110246_1110912_-|protease	Clp protease ClpP	protease	M1Q115	Streptococcus_phage	77.7	4.6e-92
WP_014411863.1|1110889_1112110_-|portal	phage portal protein	portal	J7KDU3	Streptococcus_phage	81.7	2.0e-186
WP_002985363.1|1112143_1112368_-	hypothetical protein	NA	Q938K9	Temperate_phage	61.4	3.6e-17
WP_002985365.1|1112360_1112531_-	hypothetical protein	NA	J7KK43	Streptococcus_phage	62.5	2.3e-08
WP_014411864.1|1112527_1114282_-|terminase	terminase large subunit	terminase	J7KKD1	Streptococcus_phage	96.2	0.0e+00
WP_002985371.1|1114296_1114764_-|terminase	phage terminase small subunit P27 family	terminase	J7KC46	Streptococcus_phage	98.7	3.9e-82
WP_002985375.1|1114934_1115273_-	HNH endonuclease	NA	J7KH36	Streptococcus_phage	90.7	3.0e-55
WP_014411867.1|1115857_1116298_-	ArpU family transcriptional regulator	NA	Q938L8	Temperate_phage	99.3	1.9e-78
WP_014411868.1|1116573_1116945_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014411869.1|1116941_1117652_-	DUF1642 domain-containing protein	NA	Q938L9	Temperate_phage	46.2	3.0e-25
WP_011018133.1|1117654_1118287_-	SAM-dependent DNA methyltransferase	NA	L0P368	Streptococcus_phage	68.6	2.3e-85
WP_014411870.1|1118288_1118573_-	hypothetical protein	NA	A0A097PAV1	Streptococcus_pyogenes_phage	89.4	1.4e-37
WP_014411871.1|1118569_1118974_-	hypothetical protein	NA	A3F627	Streptococcus_phage	65.2	1.6e-39
WP_002987593.1|1118983_1119253_-	hypothetical protein	NA	A0A1P8VVR6	Streptococcus_phage	100.0	3.1e-47
WP_014411872.1|1119249_1119534_-	DUF3310 domain-containing protein	NA	A0A1P8VVP5	Streptococcus_phage	96.8	2.2e-48
WP_011054576.1|1120105_1120426_-	VRR-NUC domain-containing protein	NA	A0A1P8VVL5	Streptococcus_phage	94.3	7.1e-51
WP_008087509.1|1120422_1120836_-	hypothetical protein	NA	A0A2H4JHE6	uncultured_Caudovirales_phage	50.0	2.8e-15
WP_014411876.1|1121097_1122573_-	DNA primase	NA	A0A1P8VVM0	Streptococcus_phage	86.7	2.9e-248
WP_014411877.1|1122562_1123375_-	bifunctional DNA primase/polymerase	NA	A0A1P8VVM6	Streptococcus_phage	97.4	1.3e-152
WP_011054580.1|1123377_1123836_-	DUF669 domain-containing protein	NA	A0A1P8VVN0	Streptococcus_phage	99.3	5.0e-82
WP_011528546.1|1123851_1125081_-	DEAD/DEAH box helicase	NA	A0A1P8VVM2	Streptococcus_phage	100.0	3.3e-237
WP_002995975.1|1125182_1125863_-	AAA family ATPase	NA	A0A1P8VVS4	Streptococcus_phage	100.0	1.6e-129
WP_011054820.1|1125863_1126346_-	siphovirus Gp157 family protein	NA	A0A1P8VVS5	Streptococcus_phage	99.4	4.6e-78
WP_014411879.1|1126493_1126808_-	helix-turn-helix transcriptional regulator	NA	A0A1P8VVN6	Streptococcus_phage	94.2	1.3e-49
WP_014411880.1|1126959_1127271_-	hypothetical protein	NA	A0A1S5SA25	Streptococcus_phage	78.6	1.4e-43
WP_011054585.1|1127348_1127534_-	helix-turn-helix transcriptional regulator	NA	A0A1X9I6I3	Streptococcus_phage	72.1	3.3e-16
WP_011284879.1|1127700_1127940_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002984292.1|1128090_1128300_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011285629.1|1128552_1129359_+	TIGR02391 family protein	NA	A0A1S5SBU1	Streptococcus_phage	82.1	7.9e-123
WP_014411882.1|1129570_1129810_-	helix-turn-helix transcriptional regulator	NA	A0A097PBE6	Streptococcus_pyogenes_phage	98.7	1.4e-35
WP_011284882.1|1129903_1130503_+	hypothetical protein	NA	A0A097PAT4	Streptococcus_pyogenes_phage	100.0	3.1e-108
WP_011285583.1|1130532_1130691_-	hypothetical protein	NA	A0A097PAP2	Streptococcus_pyogenes_phage	100.0	4.8e-24
WP_014411883.1|1131063_1131852_+	phage repressor protein	NA	A0A1S5SD15	Streptococcus_phage	63.0	2.0e-86
WP_011106738.1|1131861_1132167_+	membrane protein	NA	NA	NA	NA	NA
WP_003051793.1|1132289_1133432_+|integrase	site-specific integrase	integrase	M1NRJ9	Streptococcus_phage	77.4	2.4e-173
WP_002983920.1|1133521_1133797_-	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	73.0	2.6e-25
1133520:1133539	attR	AATTATTTAACAGCGTCTTT	NA	NA	NA	NA
WP_002989129.1|1133895_1134483_-	YpmS family protein	NA	NA	NA	NA	NA
WP_002992620.1|1134460_1135303_-	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA	NA
WP_002983913.1|1135295_1136147_-	DegV family protein	NA	A0A0N9SI50	Staphylococcus_phage	35.7	5.4e-13
>prophage 7
NZ_LS483332	Streptococcus pyogenes strain NCTC12696 chromosome 1	1845052	1255874	1334982	1845052	portal,terminase,protease,integrase,tail,holin,bacteriocin,capsid,tRNA	Streptococcus_phage(72.58%)	93	1272728:1272743	1318860:1318875
WP_012560856.1|1255874_1256810_-|tRNA	methionyl-tRNA formyltransferase	tRNA	M4QRX9	Synechococcus_phage	38.5	6.0e-05
WP_038432426.1|1256871_1259256_-	primosomal protein N'	NA	NA	NA	NA	NA
WP_002983650.1|1259320_1259638_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_002983649.1|1259653_1260289_-	guanylate kinase	NA	S4VT50	Pandoravirus	45.3	4.9e-11
WP_002988954.1|1260398_1262006_-	ribonuclease Y	NA	NA	NA	NA	NA
WP_004230527.1|1262135_1263032_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	21.9	2.1e-07
WP_002992509.1|1263226_1264414_+	acetyl-CoA C-acetyltransferase	NA	NA	NA	NA	NA
WP_051904302.1|1264437_1265088_+	CoA transferase subunit A	NA	NA	NA	NA	NA
WP_014635622.1|1265089_1265749_+	3-oxoacid CoA-transferase subunit B	NA	NA	NA	NA	NA
WP_002983637.1|1265781_1266561_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_038432429.1|1266631_1267963_+	GntP family permease	NA	NA	NA	NA	NA
WP_002988938.1|1268036_1268519_+	S-ribosylhomocysteine lyase	NA	NA	NA	NA	NA
WP_038432430.1|1268663_1270133_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011888664.1|1270146_1271301_-	class I SAM-dependent RNA methyltransferase	NA	NA	NA	NA	NA
WP_002983626.1|1271745_1272072_-	cell division regulator GpsB	NA	NA	NA	NA	NA
WP_011285056.1|1272193_1272709_-	DUF1273 domain-containing protein	NA	NA	NA	NA	NA
1272728:1272743	attL	AAAATATGTTATAATA	NA	NA	NA	NA
WP_002983622.1|1272789_1273398_+	Holliday junction resolvase RecU	NA	A0A1C8E9C3	Bacillus_phage	33.9	3.2e-23
WP_023609908.1|1273384_1275550_+	penicillin-binding protein	NA	NA	NA	NA	NA
WP_011017399.1|1275793_1275976_-	hypothetical protein	NA	J7KBZ4	Streptococcus_phage	74.6	1.9e-16
WP_009880239.1|1276196_1276952_+	streptococcal pyrogenic exotoxin SpeA	NA	A0A097PAT7	Streptococcus_pyogenes_phage	100.0	2.2e-143
WP_023611377.1|1277073_1278291_-	glucosaminidase domain-containing protein	NA	A0A1P8VVM5	Streptococcus_phage	59.5	2.6e-162
WP_003058873.1|1278409_1278637_-|holin	phage holin	holin	A7J2B3	Streptococcus_phage	100.0	2.0e-31
WP_011017397.1|1278633_1278906_-	hypothetical protein	NA	A7J2B2	Streptococcus_phage	91.0	5.5e-36
WP_023611372.1|1278917_1279550_-	hypothetical protein	NA	Q938J7	Temperate_phage	50.0	2.6e-44
WP_002988448.1|1279552_1279981_-	DUF1617 family protein	NA	Q938J8	Temperate_phage	84.3	8.1e-58
WP_011017395.1|1279992_1281897_-	gp58-like family protein	NA	Q938J9	Temperate_phage	83.7	1.1e-210
WP_011017394.1|1281906_1282914_-	hyaluronoglucosaminidase	NA	Q938K0	Temperate_phage	64.9	9.9e-115
WP_038432431.1|1282910_1284962_-|tail	phage tail protein	tail	A3F656	Streptococcus_phage	84.6	0.0e+00
WP_011017392.1|1284958_1285729_-|tail	phage tail family protein	tail	A3F655	Streptococcus_phage	87.5	2.1e-128
WP_023611657.1|1285741_1289842_-|tail	phage tail tape measure protein	tail	A3F654	Streptococcus_phage	66.3	0.0e+00
WP_011017390.1|1290067_1290370_-	hypothetical protein	NA	A3F652	Streptococcus_phage	96.0	1.8e-48
WP_011017389.1|1290462_1291047_-|tail	tail protein	tail	A3F651	Streptococcus_phage	90.2	3.1e-92
WP_011017388.1|1291058_1291439_-	hypothetical protein	NA	A3F650	Streptococcus_phage	99.2	7.4e-63
WP_011017387.1|1291431_1291830_-	HK97 gp10 family phage protein	NA	A3F649	Streptococcus_phage	100.0	2.9e-70
WP_011017386.1|1291831_1292194_-	hypothetical protein	NA	A3F648	Streptococcus_phage	97.5	1.1e-60
WP_011017385.1|1292186_1292495_-	hypothetical protein	NA	A3F647	Streptococcus_phage	99.0	1.2e-47
WP_011017384.1|1292494_1292668_-	hypothetical protein	NA	A3F646	Streptococcus_phage	94.7	6.4e-22
WP_011017383.1|1292681_1293815_-|capsid	phage major capsid protein	capsid	A3F645	Streptococcus_phage	96.8	3.2e-202
WP_023611660.1|1293831_1294638_-|protease	Clp protease ClpP	protease	A3F644	Streptococcus_phage	97.8	6.0e-147
WP_011017381.1|1294618_1295806_-|portal	phage portal protein	portal	A3F643	Streptococcus_phage	96.2	5.6e-218
WP_038432433.1|1295958_1296183_-	hypothetical protein	NA	A3F642	Streptococcus_phage	95.9	7.7e-36
WP_011017380.1|1296173_1297904_-|terminase	terminase large subunit	terminase	A3F641	Streptococcus_phage	97.0	0.0e+00
WP_011017379.1|1297916_1298234_-|terminase	P27 family phage terminase small subunit	terminase	A3F640	Streptococcus_phage	99.0	3.9e-49
WP_011054436.1|1298374_1298647_-	HNH endonuclease	NA	A3F639	Streptococcus_phage	95.6	4.8e-48
WP_011017377.1|1298672_1299059_-	hypothetical protein	NA	A3F638	Streptococcus_phage	93.0	1.4e-64
WP_011017376.1|1299084_1299288_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011017375.1|1299345_1299639_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011054435.1|1299792_1300368_-|integrase	site-specific integrase	integrase	A3F636	Streptococcus_phage	99.5	7.4e-107
WP_011017373.1|1300527_1300929_-	hypothetical protein	NA	A3F635	Streptococcus_phage	100.0	2.7e-71
WP_011017372.1|1300943_1301771_-	prohibitin family protein	NA	A3F634	Streptococcus_phage	100.0	1.3e-117
WP_011017371.1|1301773_1302112_-	helix-turn-helix transcriptional regulator	NA	A3F633	Streptococcus_phage	92.9	1.1e-54
WP_011054431.1|1302108_1302390_-	hypothetical protein	NA	A3F632	Streptococcus_phage	92.2	4.5e-33
WP_011017370.1|1302404_1302797_-	single-stranded DNA-binding protein	NA	A0A1P8VVS8	Streptococcus_phage	70.3	6.9e-48
WP_011017369.1|1302793_1303015_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011017368.1|1303011_1303497_-	DUF1642 domain-containing protein	NA	A0A1S5S9L5	Streptococcus_phage	41.4	5.6e-23
WP_023611652.1|1303501_1304134_-	SAM-dependent DNA methyltransferase	NA	L0P368	Streptococcus_phage	65.7	5.9e-81
WP_011017366.1|1304135_1304405_-	hypothetical protein	NA	A7J287	Streptococcus_phage	80.9	1.4e-28
WP_023611649.1|1304401_1304572_-	hypothetical protein	NA	Q938M0	Temperate_phage	55.4	2.7e-09
WP_011017365.1|1304568_1305012_-	hypothetical protein	NA	A0A1C9LX52	Streptococcus_phage	55.0	1.6e-32
WP_032467212.1|1305167_1305395_-	hypothetical protein	NA	C5J991	Streptococcus_phage	49.3	9.3e-13
WP_023611651.1|1305394_1306207_-	ATP-binding protein	NA	A0A1P8VVV9	Streptococcus_phage	77.6	6.8e-122
WP_011017361.1|1306206_1306968_-	conserved phage C-terminal domain-containing protein	NA	A0A220GFI5	Streptococcus_phage	56.1	9.1e-28
WP_011106800.1|1306960_1308316_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	84.7	9.3e-209
WP_032461348.1|1308287_1308476_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038432436.1|1308596_1308788_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011054421.1|1308880_1309138_-	hypothetical protein	NA	A3F618	Streptococcus_phage	98.8	5.4e-41
WP_011017357.1|1309211_1309931_-	ORF6C domain-containing protein	NA	A3F617	Streptococcus_phage	78.7	4.6e-106
WP_032464978.1|1309982_1310483_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011054420.1|1310810_1311023_-	helix-turn-helix transcriptional regulator	NA	M1Q1B4	Streptococcus_phage	52.9	1.7e-13
WP_011017354.1|1311057_1311333_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011017353.1|1311621_1311972_+	helix-turn-helix transcriptional regulator	NA	A0A1S5SAD3	Streptococcus_phage	63.5	1.2e-35
WP_011017352.1|1311975_1312368_+	hypothetical protein	NA	A3F612	Streptococcus_phage	68.7	2.2e-38
WP_011017351.1|1312378_1313119_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	A3F611	Streptococcus_phage	100.0	1.6e-130
WP_011017350.1|1313429_1314626_+|integrase	site-specific integrase	integrase	A3F610	Streptococcus_phage	99.0	3.9e-227
WP_002983616.1|1315028_1316366_-	aminopeptidase C	NA	R4TV59	Phaeocystis_globosa_virus	37.0	1.4e-68
WP_003055492.1|1316550_1317375_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	58.2	5.3e-74
WP_038432439.1|1317376_1318831_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	41.8	7.2e-98
WP_002988920.1|1319001_1320381_-	amino acid permease	NA	NA	NA	NA	NA
1318860:1318875	attR	TATTATAACATATTTT	NA	NA	NA	NA
WP_023079248.1|1320549_1321467_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	53.2	6.3e-92
WP_002988906.1|1321530_1321755_-	DUF4059 family protein	NA	NA	NA	NA	NA
WP_002983603.1|1321858_1322602_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.6	1.0e-28
WP_002988904.1|1322601_1323405_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_011018073.1|1323599_1324943_-	DEAD/DEAH box helicase	NA	A0A1V0SBR7	Catovirus	28.4	1.4e-42
WP_002988900.1|1325100_1326111_-	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA	NA
WP_002988898.1|1326112_1328368_-	penicillin-binding protein	NA	NA	NA	NA	NA
WP_002988895.1|1328371_1328695_-	cell division protein FtsL	NA	NA	NA	NA	NA
WP_002983586.1|1328699_1329713_-	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA	NA
WP_164976348.1|1329941_1330166_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011054854.1|1330185_1331436_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	55.6	2.2e-116
WP_011054855.1|1331428_1332250_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	36.8	4.7e-38
WP_023609905.1|1332314_1333943_-	membrane protein	NA	NA	NA	NA	NA
WP_002988881.1|1333947_1334682_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.1	3.3e-27
WP_002988878.1|1334715_1334982_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
>prophage 8
NZ_LS483332	Streptococcus pyogenes strain NCTC12696 chromosome 1	1845052	1488792	1540633	1845052	portal,terminase,integrase,tail,capsid,holin,head	Streptococcus_phage(30.65%)	79	1494909:1494924	1545169:1545184
WP_002988207.1|1488792_1489167_+	helix-turn-helix transcriptional regulator	NA	A0A097BY95	Leuconostoc_phage	51.6	2.7e-17
WP_038432505.1|1489511_1489691_-	hypothetical protein	NA	A3F673	Streptococcus_phage	75.9	6.4e-17
WP_011285611.1|1489928_1490729_+	streptodornase Sda3	NA	NA	NA	NA	NA
WP_011888701.1|1491484_1492351_-	DUF334 domain-containing protein	NA	Q938J2	Temperate_phage	99.7	1.1e-133
WP_012560947.1|1492338_1492863_-	DUF4065 domain-containing protein	NA	Q938J3	Temperate_phage	99.4	1.2e-98
WP_012560948.1|1493002_1494211_-	glucosaminidase domain-containing protein	NA	Q938J4	Temperate_phage	85.6	1.5e-210
WP_011017843.1|1494326_1494554_-|holin	phage holin	holin	A7J2B3	Streptococcus_phage	98.7	7.6e-31
WP_002987582.1|1494550_1494826_-	hypothetical protein	NA	A7J2B2	Streptococcus_phage	100.0	2.6e-41
WP_012560949.1|1494835_1495453_-	DUF1366 domain-containing protein	NA	Q938J7	Temperate_phage	86.3	1.0e-74
1494909:1494924	attL	TGTTTGTCATACTCAA	NA	NA	NA	NA
WP_002987333.1|1495455_1495617_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038432507.1|1495630_1497541_-	gp58-like family protein	NA	Q938J9	Temperate_phage	71.0	2.5e-119
WP_012560951.1|1497556_1498561_-	hyaluronoglucosaminidase	NA	Q938K0	Temperate_phage	60.3	1.9e-102
WP_012560952.1|1498557_1500609_-|tail	phage tail protein	tail	A3F656	Streptococcus_phage	85.2	0.0e+00
WP_011184914.1|1500605_1501385_-|tail	phage tail family protein	tail	A3F655	Streptococcus_phage	54.8	1.7e-66
WP_012560953.1|1501417_1505053_-	tape measure protein	NA	U6E979	Streptococcus_phage	28.0	4.0e-04
WP_002988428.1|1505067_1505397_-	hypothetical protein	NA	A0A1P8BLR3	Lactococcus_phage	40.6	5.7e-11
WP_002990023.1|1505438_1505792_-	hypothetical protein	NA	Q77RZ7	Lactococcus_phage	48.6	5.5e-20
WP_038432972.1|1505844_1506453_-|tail	phage major tail protein, TP901-1 family	tail	D7RWD5	Brochothrix_phage	52.2	5.2e-42
WP_014635506.1|1506507_1506897_-	hypothetical protein	NA	Q8LTQ5	Lactococcus_phage	69.8	2.2e-46
WP_038432514.1|1506893_1507259_-	HK97 gp10 family phage protein	NA	A0A097BY98	Enterococcus_phage	47.9	3.1e-18
WP_002984393.1|1507239_1507548_-	hypothetical protein	NA	A0A2P1JTW8	Anoxybacillus_phage	40.2	5.7e-13
WP_002984392.1|1507544_1507898_-|head,tail	phage head-tail connector protein	head,tail	A0A2H4J002	uncultured_Caudovirales_phage	49.6	9.7e-25
WP_002984390.1|1507911_1508154_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014635509.1|1508163_1509240_-|capsid	major capsid protein	capsid	A0A2H4J022	uncultured_Caudovirales_phage	56.0	5.5e-103
WP_014635510.1|1509239_1509620_-	hypothetical protein	NA	A0A0K2CNR0	Brevibacillus_phage	33.3	4.1e-05
WP_014635511.1|1509629_1510163_-	DUF4355 domain-containing protein	NA	A0A141E0S7	Streptococcus_phage	84.2	1.2e-15
WP_032462876.1|1510306_1510573_-	hypothetical protein	NA	A0A097PAR8	Streptococcus_pyogenes_phage	71.6	6.6e-26
WP_011284859.1|1510575_1510890_-	hypothetical protein	NA	M1PLI3	Streptococcus_phage	72.8	6.8e-38
WP_002988389.1|1510959_1511145_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038432517.1|1511148_1512711_-|head	phage head morphogenesis protein	head	U6E9F1	Streptococcus_phage	44.2	3.3e-48
WP_002984369.1|1512691_1514194_-|portal	phage portal protein	portal	C9W9H5	Streptococcus_virus	54.5	1.9e-141
WP_012560959.1|1514205_1515495_-|terminase	PBSX family phage terminase large subunit	terminase	A0A2H4IYR5	uncultured_Caudovirales_phage	74.9	1.7e-183
WP_002990047.1|1515472_1515955_-|terminase	terminase small subunit	terminase	E0Y3R8	Staphylococcus_virus	40.3	3.3e-15
WP_011017866.1|1516786_1517227_-	ArpU family transcriptional regulator	NA	Q938L8	Temperate_phage	100.0	5.0e-79
WP_012560960.1|1517666_1518188_-	DUF1642 domain-containing protein	NA	Q938L9	Temperate_phage	76.3	5.6e-69
WP_012560961.1|1518184_1518478_-	hypothetical protein	NA	A0A097PAR1	Streptococcus_pyogenes_phage	97.9	8.0e-49
WP_011054812.1|1518474_1518660_-	hypothetical protein	NA	A0A097PBF0	Streptococcus_pyogenes_phage	100.0	7.0e-27
WP_012560962.1|1518757_1519243_-	class I SAM-dependent methyltransferase	NA	A0A097PAU8	Streptococcus_pyogenes_phage	99.4	3.6e-94
WP_038432520.1|1519246_1519531_-	hypothetical protein	NA	A0A097PAV1	Streptococcus_pyogenes_phage	91.5	5.0e-40
WP_012560963.1|1519527_1519932_-	hypothetical protein	NA	Q938M1	Temperate_phage	94.0	3.4e-66
WP_023078268.1|1519915_1520203_-	DUF1599 domain-containing protein	NA	J7KDH9	Streptococcus_phage	75.0	5.1e-32
WP_012560965.1|1520444_1520801_-	hypothetical protein	NA	A0A097PAU4	Streptococcus_pyogenes_phage	98.3	5.5e-60
WP_011285574.1|1520797_1521238_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A097PAS0	Streptococcus_pyogenes_phage	97.9	4.5e-80
WP_011106686.1|1521237_1521441_-	hypothetical protein	NA	Q938M6	Temperate_phage	100.0	4.7e-32
WP_011285575.1|1521446_1521872_-	single-stranded DNA-binding protein	NA	A0A097PAQ3	Streptococcus_pyogenes_phage	82.3	2.8e-55
WP_012560968.1|1521864_1522539_-	ERF family protein	NA	A0A097PBE8	Streptococcus_pyogenes_phage	99.1	7.6e-119
WP_011018142.1|1522539_1523022_-	siphovirus Gp157 family protein	NA	Q938M9	Temperate_phage	100.0	8.2e-51
WP_012560970.1|1523043_1523298_-	hypothetical protein	NA	Q938N0	Temperate_phage	96.4	1.8e-41
WP_012560971.1|1523284_1523632_-	hypothetical protein	NA	A0A097PAU3	Streptococcus_pyogenes_phage	47.7	4.6e-11
WP_021341158.1|1523772_1524555_-	ATP-binding protein	NA	A0A097PAQ0	Streptococcus_pyogenes_phage	98.1	2.7e-144
WP_021340639.1|1524541_1525345_-	DnaD domain protein	NA	A0A2P0VI76	Streptococcus_phage	53.8	2.4e-63
WP_012560973.1|1525460_1525904_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000568478.1|1525959_1526340_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000370473.1|1526329_1526602_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012560974.1|1526774_1526954_-	hypothetical protein	NA	A0A1X9I5M8	Streptococcus_phage	65.5	1.2e-12
WP_012560976.1|1527500_1527860_-	hypothetical protein	NA	Q9AZZ9	Lactococcus_phage	50.0	2.2e-08
WP_012560977.1|1527933_1528191_-	hypothetical protein	NA	X2KPF2	Streptococcus_phage	36.8	3.3e-06
WP_038432527.1|1528393_1528735_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002988329.1|1528809_1529010_+	KTSC domain-containing protein	NA	A0A1S5S8T9	Streptococcus_phage	75.4	3.3e-22
WP_002988326.1|1529006_1529156_-	hypothetical protein	NA	Q938N4	Temperate_phage	98.0	2.3e-20
WP_002988323.1|1529187_1529916_-	phage antirepressor KilAC domain-containing protein	NA	Q938N5	Temperate_phage	81.8	9.7e-112
WP_002988320.1|1529948_1530137_-	helix-turn-helix transcriptional regulator	NA	A0A0B5A7F0	Streptococcus_phage	65.6	1.8e-14
WP_038432530.1|1530197_1530611_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019418745.1|1530612_1530771_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002988317.1|1530783_1531545_-	phage repressor protein/antirepressor Ant	NA	Q6SEF4	Lactobacillus_prophage	63.2	3.3e-86
WP_002988313.1|1531711_1531984_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002988309.1|1531972_1532173_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000164463.1|1532208_1532424_-	helix-turn-helix transcriptional regulator	NA	J7KK54	Streptococcus_phage	98.6	5.0e-32
WP_002988305.1|1532497_1532725_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002988299.1|1532841_1533621_+	hypothetical protein	NA	A0A1S5S7L0	Streptococcus_phage	57.4	6.2e-48
WP_002988291.1|1533754_1533913_-	hypothetical protein	NA	J7KH24	Streptococcus_phage	92.3	1.7e-21
WP_002988288.1|1534276_1535035_+	helix-turn-helix transcriptional regulator	NA	J7KJ52	Streptococcus_phage	88.0	1.2e-120
WP_002988284.1|1535107_1535530_+	Ltp family lipoprotein	NA	NA	NA	NA	NA
WP_038432536.1|1535650_1536787_+|integrase	site-specific integrase	integrase	A0A1B1IMP1	Lactococcus_phage	35.6	1.3e-57
WP_002988205.1|1536846_1537146_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_002992265.1|1537202_1537940_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014635690.1|1538091_1538679_-	3'-5' exonuclease	NA	A0A0A8WJ41	Clostridium_phage	28.9	9.2e-12
WP_014635691.1|1538727_1539258_-	DUF536 domain-containing protein	NA	NA	NA	NA	NA
WP_023609903.1|1539463_1540633_+	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	53.0	5.5e-16
1545169:1545184	attR	TGTTTGTCATACTCAA	NA	NA	NA	NA
>prophage 9
NZ_LS483332	Streptococcus pyogenes strain NCTC12696 chromosome 1	1845052	1763594	1783062	1845052	integrase,holin	Streptococcus_phage(64.71%)	24	1766793:1766813	1780363:1780383
WP_002992187.1|1763594_1764815_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	23.6	3.5e-05
WP_002992189.1|1764825_1766808_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	30.1	2.3e-62
1766793:1766813	attL	CAATAATGTTTGTCATAATTT	NA	NA	NA	NA
WP_003058754.1|1766902_1768054_-|integrase	site-specific integrase	integrase	A0A1X9I5Y5	Streptococcus_phage	44.9	3.6e-84
WP_011185066.1|1768302_1768446_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
WP_003058809.1|1769294_1770062_-	helix-turn-helix domain-containing protein	NA	Q76TK4	Streptococcus_pyogenes_phage	83.1	3.6e-72
WP_002992503.1|1770215_1770422_+	helix-turn-helix transcriptional regulator	NA	X2KUC2	Streptococcus_phage	47.0	2.4e-07
WP_002992502.1|1770455_1770656_+	helix-turn-helix transcriptional regulator	NA	A0A1S5SE31	Streptococcus_phage	56.7	3.4e-11
WP_002992501.1|1770676_1771084_+	hypothetical protein	NA	A0A1X9I5V7	Streptococcus_phage	69.4	1.3e-49
WP_011185071.1|1771495_1772023_+	Rha family transcriptional regulator	NA	R9QNB1	Lactococcus_phage	40.2	9.7e-21
WP_002992497.1|1772267_1772600_+	hypothetical protein	NA	NA	NA	NA	NA
WP_027968868.1|1772599_1772791_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000206026.1|1772803_1773166_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000174505.1|1773162_1773492_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001100459.1|1773494_1773767_+	hypothetical protein	NA	A0A1X9I5U9	Streptococcus_phage	60.0	6.1e-19
WP_011185073.1|1773767_1774625_+	primase C-terminal domain-containing protein	NA	A0A1X9I6L2	Streptococcus_phage	74.8	9.0e-125
WP_038432681.1|1774593_1776282_+	DNA primase	NA	A0A1X9I717	Streptococcus_phage	82.0	1.2e-258
WP_000694577.1|1776568_1776742_+	hypothetical protein	NA	A0A1X9I5U0	Streptococcus_phage	59.6	1.9e-10
WP_011185075.1|1776747_1776921_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011185076.1|1776922_1777432_+	hypothetical protein	NA	A0A1X9I5U4	Streptococcus_phage	62.5	4.2e-29
WP_002992480.1|1777506_1777995_+	hypothetical protein	NA	A0A1X9I5V2	Streptococcus_phage	54.9	1.4e-45
WP_002992136.1|1778398_1778761_+	DUF1492 domain-containing protein	NA	A0A2H4JFS1	uncultured_Caudovirales_phage	29.9	8.7e-05
WP_011185077.1|1778735_1779119_+	ArpU family transcriptional regulator	NA	A0A286QPF1	Streptococcus_phage	35.5	1.1e-08
WP_011185078.1|1779319_1779925_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002993100.1|1780506_1783062_-	DNA mismatch repair protein MutS	NA	A0A1V0SGG8	Hokovirus	23.3	5.2e-43
1780363:1780383	attR	CAATAATGTTTGTCATAATTT	NA	NA	NA	NA
