assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900474895.1_42042_C02	NZ_LS483332	Streptococcus pyogenes strain NCTC12696 chromosome 1	1	779973-780067	1	CRISPRCasFinder	no	cas9,cas1,cas2,csn2	cas3,DinG,csm6,cas9,cas1,cas2,csn2,DEDDh,csa3	Type II-A,Type II-C,Type II-B	GTTTTAGAGCTATGCTGTTTTGAATGGTC	29	0	0	NA	NA	II-A	1	1	TypeII-A,TypeII-C,TypeII-B	cas3,DinG,csm6,cas9,cas1,cas2,csn2,DEDDh,csa3	NA|214aa|up_8|NZ_LS483332.1_769435_770077_+,NA	NA|452aa|up_9|NZ_LS483332.1_767956_769312_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|214aa|up_8|NZ_LS483332.1_769435_770077_+	NA	NA|377aa|up_7|NZ_LS483332.1_770139_771270_+	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|251aa|up_6|NZ_LS483332.1_771279_772032_+	COG3884, FatA, Acyl-ACP thioesterase [Lipid metabolism]	NA|255aa|up_5|NZ_LS483332.1_772031_772796_+	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|211aa|up_4|NZ_LS483332.1_772795_773428_+	COG4478, COG4478, Predicted membrane protein [Function unknown]	cas9|1368aa|up_3|NZ_LS483332.1_773907_778011_+	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	cas1|290aa|up_2|NZ_LS483332.1_778010_778880_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|114aa|up_1|NZ_LS483332.1_778876_779218_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|221aa|up_0|NZ_LS483332.1_779207_779870_+	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	NA|611aa|down_0|NZ_LS483332.1_780717_782550_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|543aa|down_1|NZ_LS483332.1_782736_784365_+	PRK12678, PRK12678, transcription termination factor Rho; Provisional	NA|146aa|down_2|NZ_LS483332.1_784563_785001_+	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|340aa|down_3|NZ_LS483332.1_785130_786150_+	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|142aa|down_4|NZ_LS483332.1_786356_786782_+	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|164aa|down_5|NZ_LS483332.1_786800_787292_+	COG3444, COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism]	NA|270aa|down_6|NZ_LS483332.1_787308_788118_+	COG3715, ManY, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]	NA|276aa|down_7|NZ_LS483332.1_788114_788942_+	COG3716, ManZ, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID [Carbohydrate transport and metabolism]	NA|550aa|down_8|NZ_LS483332.1_789077_790727_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|263aa|down_9|NZ_LS483332.1_790730_791519_+	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
GCF_900474895.1_42042_C02	NZ_LS483332	Streptococcus pyogenes strain NCTC12696 chromosome 1	2	858735-858824	2	CRISPRCasFinder	no		cas3,DinG,csm6,cas9,cas1,cas2,csn2,DEDDh,csa3	Orphan	ATCCAAAGATGCTGTTGAAGTTTA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,csm6,cas9,cas1,cas2,csn2,DEDDh,csa3	NA,NA|105aa|down_9|NZ_LS483332.1_869208_869523_+	NA|419aa|up_9|NZ_LS483332.1_844928_846185_+	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|326aa|up_8|NZ_LS483332.1_846191_847169_+	pfam04245, NA37, 37-kD nucleoid-associated bacterial protein	NA|200aa|up_7|NZ_LS483332.1_847169_847769_+	pfam13702, Lysozyme_like, Lysozyme-like	NA|575aa|up_6|NZ_LS483332.1_847778_849503_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|576aa|up_5|NZ_LS483332.1_849499_851227_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|457aa|up_4|NZ_LS483332.1_851467_852838_+	PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed	NA|328aa|up_3|NZ_LS483332.1_852997_853981_-	PRK00066, ldh, L-lactate dehydrogenase; Reviewed	NA|829aa|up_2|NZ_LS483332.1_854171_856658_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|250aa|up_1|NZ_LS483332.1_856677_857427_+	COG3764, SrtA, Sortase (surface protein transpeptidase) [Cell envelope biogenesis, outer membrane]	NA|138aa|up_0|NZ_LS483332.1_857509_857923_+	cd08352, VOC_Bs_YwkD_like, vicinal oxygen chelate (VOC) family protein  Bacillus subtilis YwkD and similar proteins	NA|304aa|down_0|NZ_LS483332.1_859024_859936_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|217aa|down_1|NZ_LS483332.1_860052_860703_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|147aa|down_2|NZ_LS483332.1_860699_861140_-	pfam08876, DUF1836, Domain of unknown function (DUF1836)	NA|283aa|down_3|NZ_LS483332.1_861358_862207_+	PRK09563, rbgA, GTPase YlqF; Reviewed	NA|264aa|down_4|NZ_LS483332.1_862196_862988_+	PRK00015, rnhB, ribonuclease HII; Validated	NA|279aa|down_5|NZ_LS483332.1_863052_863889_+	COG0758, Smf, Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion]	NA|710aa|down_6|NZ_LS483332.1_863996_866126_+	PRK05582, PRK05582, type I DNA topoisomerase	NA|449aa|down_7|NZ_LS483332.1_866260_867607_+	PRK05335, PRK05335, tRNA (uracil-5-)-methyltransferase Gid; Reviewed	NA|469aa|down_8|NZ_LS483332.1_867759_869166_+	PRK12581, PRK12581, oxaloacetate decarboxylase; Provisional	NA|105aa|down_9|NZ_LS483332.1_869208_869523_+	NA
GCF_900474895.1_42042_C02	NZ_LS483332	Streptococcus pyogenes strain NCTC12696 chromosome 1	3	958764-958865	3	CRISPRCasFinder	no		cas3,DinG,csm6,cas9,cas1,cas2,csn2,DEDDh,csa3	Orphan	AATAATTGGTATAGTCTAATTATA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,csm6,cas9,cas1,cas2,csn2,DEDDh,csa3	NA,NA|262aa|down_6|NZ_LS483332.1_966695_967481_+	NA|83aa|up_9|NZ_LS483332.1_946480_946729_-	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|773aa|up_8|NZ_LS483332.1_947091_949410_-	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|441aa|up_7|NZ_LS483332.1_949939_951262_+	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism]	NA|412aa|up_6|NZ_LS483332.1_951381_952617_+	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|258aa|up_5|NZ_LS483332.1_952986_953760_-	pfam07373, CAMP_factor, CAMP factor (Cfa)	NA|279aa|up_4|NZ_LS483332.1_954129_954966_-	cd00996, PBP2_AatB_like, Polar amino acids-binding domain of ATP-binding cassette transporter-like systems that belong to the type 2 periplasmic binding fold protein superfamily	NA|210aa|up_3|NZ_LS483332.1_954981_955611_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|214aa|up_2|NZ_LS483332.1_955620_956262_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|112aa|up_1|NZ_LS483332.1_956367_956703_-	COG2824, PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]	NA|605aa|up_0|NZ_LS483332.1_956898_958713_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|186aa|down_0|NZ_LS483332.1_958888_959446_-	TIGR02227, Inactive_signal_peptidase_IA	NA|501aa|down_1|NZ_LS483332.1_959663_961166_-	PRK05826, PRK05826, pyruvate kinase; Provisional	NA|338aa|down_2|NZ_LS483332.1_961228_962242_-	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|1037aa|down_3|NZ_LS483332.1_962321_965432_-	PRK07279, dnaE, DNA polymerase III DnaE; Reviewed	NA|124aa|down_4|NZ_LS483332.1_965616_965988_+	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|233aa|down_5|NZ_LS483332.1_965987_966686_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|262aa|down_6|NZ_LS483332.1_966695_967481_+	NA	NA|205aa|down_7|NZ_LS483332.1_967611_968226_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|207aa|down_8|NZ_LS483332.1_968966_969587_+	pfam12978, DUF3862, Domain of Unknown Function with PDB structure (DUF3862)	NA|755aa|down_9|NZ_LS483332.1_969843_972108_-	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins
