assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900474945.1_42017_E01	NZ_LS483521	Streptococcus pyogenes strain NCTC8316 chromosome 1	1	369417-369534	1	CRISPRCasFinder	no		cas3,DinG,csm6,cas9,cas1,cas2,csn2,RT,cas7,cas8c,cas5,DEDDh,csa3	Orphan	TCCCACGCGTGTGCGAATGTGTGTGCGAAT	30	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,csm6,cas9,cas1,cas2,csn2,RT,cas7,cas8c,cas5,DEDDh,csa3	NA|196aa|up_6|NZ_LS483521.1_360289_360877_+,NA|146aa|up_5|NZ_LS483521.1_362764_363202_+,NA|139aa|up_3|NZ_LS483521.1_365921_366338_+,NA|149aa|up_2|NZ_LS483521.1_366864_367311_+,NA|84aa|up_1|NZ_LS483521.1_367542_367794_+,NA|84aa|down_6|NZ_LS483521.1_375367_375619_+,NA|114aa|down_8|NZ_LS483521.1_376484_376826_+	NA|146aa|up_9|NZ_LS483521.1_356238_356676_+	PRK03600, nrdI, class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA|727aa|up_8|NZ_LS483521.1_356695_358876_+	PRK07187, PRK07187, ribonucleoside-diphosphate reductase subunit alpha	NA|251aa|up_7|NZ_LS483521.1_359080_359833_-	cd00233, VIP2, VIP2; A family of actin-ADP-ribosylating toxin	NA|196aa|up_6|NZ_LS483521.1_360289_360877_+	NA	NA|146aa|up_5|NZ_LS483521.1_362764_363202_+	NA	NA|198aa|up_4|NZ_LS483521.1_365278_365872_+	pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein	NA|139aa|up_3|NZ_LS483521.1_365921_366338_+	NA	NA|149aa|up_2|NZ_LS483521.1_366864_367311_+	NA	NA|84aa|up_1|NZ_LS483521.1_367542_367794_+	NA	NA|216aa|up_0|NZ_LS483521.1_367881_368529_-	pfam06886, TPX2, Targeting protein for Xklp2 (TPX2)	NA|79aa|down_0|NZ_LS483521.1_369595_369832_+	pfam11195, DUF2829, Protein of unknown function (DUF2829)	NA|233aa|down_1|NZ_LS483521.1_369824_370523_+	PRK06550, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|320aa|down_2|NZ_LS483521.1_370598_371558_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|446aa|down_3|NZ_LS483521.1_371890_373228_+	cd17345, MFS_GlpT, Glycerol-3-Phosphate Transporter of the Major Facilitator Superfamily of transporters	NA|461aa|down_4|NZ_LS483521.1_373400_374783_+	PRK14354, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA|185aa|down_5|NZ_LS483521.1_374813_375368_+	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate	NA|84aa|down_6|NZ_LS483521.1_375367_375619_+	NA	NA|232aa|down_7|NZ_LS483521.1_375638_376334_+	PRK05584, PRK05584, 5'-methylthioadenosine/adenosylhomocysteine nucleosidase	NA|114aa|down_8|NZ_LS483521.1_376484_376826_+	NA	NA|216aa|down_9|NZ_LS483521.1_376925_377573_-	COG1321, TroR, Mn-dependent transcriptional regulator [Transcription]
GCF_900474945.1_42017_E01	NZ_LS483521	Streptococcus pyogenes strain NCTC8316 chromosome 1	2	781856-782220	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas9,cas1,cas2,csn2	cas3,DinG,csm6,cas9,cas1,cas2,csn2,RT,cas7,cas8c,cas5,DEDDh,csa3	Type II-B,Type II-C,Type II-A	GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC,GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC,GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	36,36,36	0	0	NA	NA	II-A:II-A:II-A	5,5,2	5	TypeII-B,TypeII-C,TypeII-A	cas3,DinG,csm6,cas9,cas1,cas2,csn2,RT,cas7,cas8c,cas5,DEDDh,csa3	NA|214aa|up_8|NZ_LS483521.1_771319_771961_+,NA	NA|452aa|up_9|NZ_LS483521.1_769840_771196_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|214aa|up_8|NZ_LS483521.1_771319_771961_+	NA	NA|377aa|up_7|NZ_LS483521.1_772023_773154_+	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|251aa|up_6|NZ_LS483521.1_773163_773916_+	COG3884, FatA, Acyl-ACP thioesterase [Lipid metabolism]	NA|255aa|up_5|NZ_LS483521.1_773915_774680_+	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|211aa|up_4|NZ_LS483521.1_774679_775312_+	COG4478, COG4478, Predicted membrane protein [Function unknown]	cas9|1368aa|up_3|NZ_LS483521.1_775790_779894_+	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	cas1|290aa|up_2|NZ_LS483521.1_779893_780763_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|114aa|up_1|NZ_LS483521.1_780759_781101_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|221aa|up_0|NZ_LS483521.1_781090_781753_+	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	NA|611aa|down_0|NZ_LS483521.1_782861_784694_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|437aa|down_1|NZ_LS483521.1_784886_786197_+	PRK12678, PRK12678, transcription termination factor Rho; Provisional	NA|146aa|down_2|NZ_LS483521.1_786382_786820_+	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|340aa|down_3|NZ_LS483521.1_786949_787969_+	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|142aa|down_4|NZ_LS483521.1_788175_788601_+	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|164aa|down_5|NZ_LS483521.1_788619_789111_+	COG3444, COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism]	NA|270aa|down_6|NZ_LS483521.1_789127_789937_+	COG3715, ManY, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]	NA|276aa|down_7|NZ_LS483521.1_789933_790761_+	COG3716, ManZ, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID [Carbohydrate transport and metabolism]	NA|550aa|down_8|NZ_LS483521.1_790896_792546_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|263aa|down_9|NZ_LS483521.1_792549_793338_+	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
GCF_900474945.1_42017_E01	NZ_LS483521	Streptococcus pyogenes strain NCTC8316 chromosome 1	3	905443-905532	3	CRISPRCasFinder	no		cas3,DinG,csm6,cas9,cas1,cas2,csn2,RT,cas7,cas8c,cas5,DEDDh,csa3	Orphan	ATCCAAAGATGCTGTTGAAGTTTA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,csm6,cas9,cas1,cas2,csn2,RT,cas7,cas8c,cas5,DEDDh,csa3	NA,NA	NA|419aa|up_9|NZ_LS483521.1_891639_892896_+	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|326aa|up_8|NZ_LS483521.1_892902_893880_+	pfam04245, NA37, 37-kD nucleoid-associated bacterial protein	NA|200aa|up_7|NZ_LS483521.1_893880_894480_+	pfam13702, Lysozyme_like, Lysozyme-like	NA|575aa|up_6|NZ_LS483521.1_894489_896214_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|576aa|up_5|NZ_LS483521.1_896210_897938_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|457aa|up_4|NZ_LS483521.1_898177_899548_+	PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed	NA|328aa|up_3|NZ_LS483521.1_899706_900690_-	PRK00066, ldh, L-lactate dehydrogenase; Reviewed	NA|829aa|up_2|NZ_LS483521.1_900880_903367_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|250aa|up_1|NZ_LS483521.1_903386_904136_+	COG3764, SrtA, Sortase (surface protein transpeptidase) [Cell envelope biogenesis, outer membrane]	NA|138aa|up_0|NZ_LS483521.1_904218_904632_+	cd08352, VOC_Bs_YwkD_like, vicinal oxygen chelate (VOC) family protein  Bacillus subtilis YwkD and similar proteins	NA|304aa|down_0|NZ_LS483521.1_905729_906641_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|217aa|down_1|NZ_LS483521.1_906757_907408_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|147aa|down_2|NZ_LS483521.1_907404_907845_-	pfam08876, DUF1836, Domain of unknown function (DUF1836)	NA|283aa|down_3|NZ_LS483521.1_908063_908912_+	PRK09563, rbgA, GTPase YlqF; Reviewed	NA|264aa|down_4|NZ_LS483521.1_908901_909693_+	PRK00015, rnhB, ribonuclease HII; Validated	NA|279aa|down_5|NZ_LS483521.1_909756_910593_+	COG0758, Smf, Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion]	NA|710aa|down_6|NZ_LS483521.1_910699_912829_+	PRK05582, PRK05582, type I DNA topoisomerase	NA|331aa|down_7|NZ_LS483521.1_914294_915287_+	PRK08605, PRK08605, D-lactate dehydrogenase; Validated	NA|222aa|down_8|NZ_LS483521.1_915391_916057_+	pfam16264, SatD, SatD family (SatD)	NA|239aa|down_9|NZ_LS483521.1_916049_916766_+	pfam11750, DUF3307, Protein of unknown function (DUF3307)
GCF_900474945.1_42017_E01	NZ_LS483521	Streptococcus pyogenes strain NCTC8316 chromosome 1	4	1010703-1010804	4	CRISPRCasFinder	no		cas3,DinG,csm6,cas9,cas1,cas2,csn2,RT,cas7,cas8c,cas5,DEDDh,csa3	Orphan	AATAATTGGTATAGTCTAATTATA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,csm6,cas9,cas1,cas2,csn2,RT,cas7,cas8c,cas5,DEDDh,csa3	NA,NA|262aa|down_6|NZ_LS483521.1_1018634_1019420_+	NA|773aa|up_9|NZ_LS483521.1_997799_1000118_-	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|441aa|up_8|NZ_LS483521.1_1000646_1001969_+	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism]	NA|412aa|up_7|NZ_LS483521.1_1002088_1003324_+	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|369aa|up_6|NZ_LS483521.1_1003668_1004774_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|258aa|up_5|NZ_LS483521.1_1004914_1005688_-	pfam07373, CAMP_factor, CAMP factor (Cfa)	NA|279aa|up_4|NZ_LS483521.1_1006067_1006904_-	cd00996, PBP2_AatB_like, Polar amino acids-binding domain of ATP-binding cassette transporter-like systems that belong to the type 2 periplasmic binding fold protein superfamily	NA|210aa|up_3|NZ_LS483521.1_1006919_1007549_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|214aa|up_2|NZ_LS483521.1_1007558_1008200_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|112aa|up_1|NZ_LS483521.1_1008306_1008642_-	COG2824, PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]	NA|605aa|up_0|NZ_LS483521.1_1008837_1010652_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|186aa|down_0|NZ_LS483521.1_1010827_1011385_-	TIGR02227, Inactive_signal_peptidase_IA	NA|501aa|down_1|NZ_LS483521.1_1011602_1013105_-	PRK05826, PRK05826, pyruvate kinase; Provisional	NA|338aa|down_2|NZ_LS483521.1_1013167_1014181_-	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|1037aa|down_3|NZ_LS483521.1_1014260_1017371_-	PRK07279, dnaE, DNA polymerase III DnaE; Reviewed	NA|124aa|down_4|NZ_LS483521.1_1017555_1017927_+	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|233aa|down_5|NZ_LS483521.1_1017926_1018625_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|262aa|down_6|NZ_LS483521.1_1018634_1019420_+	NA	NA|205aa|down_7|NZ_LS483521.1_1019550_1020165_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|207aa|down_8|NZ_LS483521.1_1020915_1021536_+	pfam12978, DUF3862, Domain of Unknown Function with PDB structure (DUF3862)	NA|755aa|down_9|NZ_LS483521.1_1021792_1024057_-	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins
GCF_900474945.1_42017_E01	NZ_LS483521	Streptococcus pyogenes strain NCTC8316 chromosome 1	5	1222799-1223034	2,2,5	CRT,PILER-CR,CRISPRCasFinder	no	cas2,cas7,cas8c,cas5,cas3	cas3,DinG,csm6,cas9,cas1,cas2,csn2,RT,cas7,cas8c,cas5,DEDDh,csa3	Type I-C,Type I-U, Type I-U?	TATTTCAATCCACTCACCCATGAAGGGTGAGAC,ATTTCAATCCACTCACCCATGAAGGGTGAGACTG,TTTCAATCCACTCACCCATGAAGGGTGAGAC	33,34,31	0	0	NA	NA	I-C:I-C:I-C	3,3,3	3	TypeI-C,TypeI-U,TypeI-U?	cas3,DinG,csm6,cas9,cas1,cas2,csn2,RT,cas7,cas8c,cas5,DEDDh,csa3	NA,NA	NA|412aa|up_9|NZ_LS483521.1_1212734_1213970_-	PRK01388, PRK01388, arginine deiminase; Provisional	NA|227aa|up_8|NZ_LS483521.1_1214243_1214924_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|158aa|up_7|NZ_LS483521.1_1215065_1215539_+	COG1438, ArgR, Arginine repressor [Transcription]	NA|239aa|up_6|NZ_LS483521.1_1215704_1216421_-	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only]	NA|360aa|up_5|NZ_LS483521.1_1216434_1217514_-	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown]	NA|578aa|up_4|NZ_LS483521.1_1217586_1219320_-	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|247aa|up_3|NZ_LS483521.1_1219316_1220057_-	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|369aa|up_2|NZ_LS483521.1_1220144_1221251_-	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|208aa|up_1|NZ_LS483521.1_1221293_1221917_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|237aa|up_0|NZ_LS483521.1_1221929_1222640_-	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	cas2|98aa|down_0|NZ_LS483521.1_1223180_1223474_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas7|283aa|down_1|NZ_LS483521.1_1225182_1226031_-	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas8c|631aa|down_2|NZ_LS483521.1_1226035_1227928_-	TIGR01863, CRISPR-associated_protein_CT1133_family, CRISPR-associated protein Cas8c/Csd1, subtype I-C/DVULG	cas5|243aa|down_3|NZ_LS483521.1_1227931_1228660_-	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas3|803aa|down_4|NZ_LS483521.1_1228792_1231201_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|883aa|down_5|NZ_LS483521.1_1231354_1234003_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|188aa|down_6|NZ_LS483521.1_1234004_1234568_-	pfam13238, AAA_18, AAA domain	NA|132aa|down_7|NZ_LS483521.1_1235168_1235564_-	PRK07758, PRK07758, hypothetical protein; Provisional	NA|85aa|down_8|NZ_LS483521.1_1235584_1235839_-	pfam08930, DUF1912, Domain of unknown function (DUF1912)	NA|251aa|down_9|NZ_LS483521.1_1236317_1237070_+	PRK13397, PRK13397, 3-deoxy-7-phosphoheptulonate synthase; Provisional
