assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900474995.1_41906_H01	NZ_LS483344	Streptococcus pyogenes strain NCTC12840 chromosome 1	1	279198-279428	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas5,cas8c,cas7,cas4,cas2	cas3,cas5,cas8c,cas7,cas4,cas2,csm6,DinG,DEDDh,csa3	Type I-U,Type I-C, Type I-U?	GTCTCACCCTTCATGGGTGAGTGGATTGAAAT,GTCTCACCCTTCATGGGTGAGTGGATTGAAA,GTCTCACCCTTCATGGGTGAGTGGATTGAAATA	32,31,33	2	2	279295-279328|279296-279328	NZ_LS483344.1_497038-497071|NZ_LS483344.1_497039-497071	I-C:I-C:I-C	3,3,3	3	TypeI-U?,TypeI-C,TypeI-U	cas3,cas5,cas8c,cas7,cas4,cas2,csm6,DinG,DEDDh,csa3	NA|183aa|up_6|NZ_LS483344.1_267673_268222_+,NA	NA|85aa|up_9|NZ_LS483344.1_266318_266573_+	pfam08930, DUF1912, Domain of unknown function (DUF1912)	NA|132aa|up_8|NZ_LS483344.1_266593_266989_+	PRK07758, PRK07758, hypothetical protein; Provisional	NA|48aa|up_7|NZ_LS483344.1_267312_267456_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|183aa|up_6|NZ_LS483344.1_267673_268222_+	NA	NA|884aa|up_5|NZ_LS483344.1_268235_270887_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	cas5|243aa|up_4|NZ_LS483344.1_273581_274310_+	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas8c|632aa|up_3|NZ_LS483344.1_274309_276205_+	TIGR01863, CRISPR-associated_protein_CT1133_family, CRISPR-associated protein Cas8c/Csd1, subtype I-C/DVULG	cas7|283aa|up_2|NZ_LS483344.1_276209_277058_+	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas4|225aa|up_1|NZ_LS483344.1_277059_277734_+	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense    mechanisms]	cas2|98aa|up_0|NZ_LS483344.1_278755_279049_+	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	NA|237aa|down_0|NZ_LS483344.1_279586_280297_+	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	NA|208aa|down_1|NZ_LS483344.1_280309_280933_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|369aa|down_2|NZ_LS483344.1_280975_282082_+	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|247aa|down_3|NZ_LS483344.1_282169_282910_+	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|578aa|down_4|NZ_LS483344.1_282906_284640_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|360aa|down_5|NZ_LS483344.1_284712_285792_+	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown]	NA|239aa|down_6|NZ_LS483344.1_285814_286531_+	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only]	NA|158aa|down_7|NZ_LS483344.1_286597_287071_-	COG1438, ArgR, Arginine repressor [Transcription]	NA|227aa|down_8|NZ_LS483344.1_287212_287893_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|412aa|down_9|NZ_LS483344.1_288166_289402_+	PRK01388, PRK01388, arginine deiminase; Provisional
GCF_900474995.1_41906_H01	NZ_LS483344	Streptococcus pyogenes strain NCTC12840 chromosome 1	2	512508-512608	2	CRISPRCasFinder	no		cas3,cas5,cas8c,cas7,cas4,cas2,csm6,DinG,DEDDh,csa3	Orphan	TATAATTAGACTATACCAATTTT	23	0	0	NA	NA	NA	1	1	Orphan	cas3,cas5,cas8c,cas7,cas4,cas2,csm6,DinG,DEDDh,csa3	NA|145aa|up_9|NZ_LS483344.1_500627_501062_-,NA|63aa|up_7|NZ_LS483344.1_502370_502559_+,NA|262aa|up_5|NZ_LS483344.1_503890_504676_-,NA	NA|145aa|up_9|NZ_LS483344.1_500627_501062_-	NA	NA|267aa|up_8|NZ_LS483344.1_501332_502133_-	pfam13930, Endonuclea_NS_2, DNA/RNA non-specific endonuclease	NA|63aa|up_7|NZ_LS483344.1_502370_502559_+	NA	NA|205aa|up_6|NZ_LS483344.1_503149_503764_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|262aa|up_5|NZ_LS483344.1_503890_504676_-	NA	NA|124aa|up_4|NZ_LS483344.1_505384_505756_-	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|1037aa|up_3|NZ_LS483344.1_505940_509051_+	PRK07279, dnaE, DNA polymerase III DnaE; Reviewed	NA|338aa|up_2|NZ_LS483344.1_509130_510144_+	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|501aa|up_1|NZ_LS483344.1_510206_511709_+	PRK05826, PRK05826, pyruvate kinase; Provisional	NA|186aa|up_0|NZ_LS483344.1_511926_512484_+	TIGR02227, Inactive_signal_peptidase_IA	NA|605aa|down_0|NZ_LS483344.1_512659_514474_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|112aa|down_1|NZ_LS483344.1_514669_515005_+	COG2824, PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]	NA|214aa|down_2|NZ_LS483344.1_515111_515753_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|210aa|down_3|NZ_LS483344.1_515762_516392_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|279aa|down_4|NZ_LS483344.1_516407_517244_+	cd00996, PBP2_AatB_like, Polar amino acids-binding domain of ATP-binding cassette transporter-like systems that belong to the type 2 periplasmic binding fold protein superfamily	NA|258aa|down_5|NZ_LS483344.1_517612_518386_+	pfam07373, CAMP_factor, CAMP factor (Cfa)	NA|412aa|down_6|NZ_LS483344.1_518755_519991_-	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|441aa|down_7|NZ_LS483344.1_520110_521433_-	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism]	NA|773aa|down_8|NZ_LS483344.1_521962_524281_+	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|83aa|down_9|NZ_LS483344.1_524643_524892_+	COG2261, COG2261, Predicted membrane protein [Function unknown]
GCF_900474995.1_41906_H01	NZ_LS483344	Streptococcus pyogenes strain NCTC12840 chromosome 1	3	1463637-1463743	3	CRISPRCasFinder	no		cas3,cas5,cas8c,cas7,cas4,cas2,csm6,DinG,DEDDh,csa3	Orphan	GGGACTTCTTCACCATCTAACTCTGGCATTAATGG	35	0	0	NA	NA	NA	1	1	Orphan	cas3,cas5,cas8c,cas7,cas4,cas2,csm6,DinG,DEDDh,csa3	NA|220aa|up_5|NZ_LS483344.1_1451265_1451925_+,NA	NA|220aa|up_9|NZ_LS483344.1_1446550_1447210_-	COG1788, AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism]	NA|395aa|up_8|NZ_LS483344.1_1447221_1448406_-	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|304aa|up_7|NZ_LS483344.1_1448526_1449438_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|469aa|up_6|NZ_LS483344.1_1449506_1450913_-	COG2031, AtoE, Short chain fatty acids transporter [Lipid metabolism]	NA|220aa|up_5|NZ_LS483344.1_1451265_1451925_+	NA	NA|1700aa|up_4|NZ_LS483344.1_1452011_1457111_-	COG4932, COG4932, Predicted outer membrane protein [Cell envelope biogenesis, outer membrane]	NA|286aa|up_3|NZ_LS483344.1_1457229_1458087_-	cd05827, Sortase_C, Sortase domain found in class C sortases	NA|296aa|up_2|NZ_LS483344.1_1458088_1458976_-	cd05827, Sortase_C, Sortase domain found in class C sortases	NA|311aa|up_1|NZ_LS483344.1_1458953_1459886_-	pfam17802, SpaA, Prealbumin-like fold domain	NA|572aa|up_0|NZ_LS483344.1_1459972_1461688_-	TIGR04226, Fimbrial_subunit_type_2, fimbrial isopeptide formation D2 domain	NA|498aa|down_0|NZ_LS483344.1_1464985_1466479_+	pfam08270, PRD_Mga, M protein trans-acting positive regulator (MGA) PRD domain	NA|291aa|down_1|NZ_LS483344.1_1466625_1467498_+	PRK00114, hslO, Hsp33 family molecular chaperone HslO	NA|326aa|down_2|NZ_LS483344.1_1467484_1468462_+	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|214aa|down_3|NZ_LS483344.1_1468481_1469123_+	COG1428, COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism]	NA|132aa|down_4|NZ_LS483344.1_1469381_1469777_-	PRK07274, PRK07274, single-stranded DNA-binding protein; Provisional	NA|209aa|down_5|NZ_LS483344.1_1469927_1470554_-	cd02796, tRNA_bind_bactPheRS, tRNA-binding-domain-containing prokaryotic phenylalanly tRNA synthetase (PheRS) beta chain	NA|106aa|down_6|NZ_LS483344.1_1470571_1470889_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|98aa|down_7|NZ_LS483344.1_1470885_1471179_-	pfam15513, DUF4651, Domain of unknown function (DUF4651)	NA|356aa|down_8|NZ_LS483344.1_1471634_1472702_+	TIGR03107, Glutamyl_aminopeptidase, glutamyl aminopeptidase	NA|257aa|down_9|NZ_LS483344.1_1472749_1473520_+	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed
