assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900475295.1_43188_D01	NZ_LS483368	Streptococcus equi subsp. zooepidemicus strain NCTC6176 chromosome 1	1	493629-493699	1	CRISPRCasFinder	no		cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,RT,DinG,csm6	Orphan	TCCTGTGGCTTTTCAGAGATAGT	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,RT,DinG,csm6	NA|99aa|up_1|NZ_LS483368.1_492145_492442_-,NA	NA|304aa|up_9|NZ_LS483368.1_483601_484513_-	COG3716, ManZ, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID [Carbohydrate transport and metabolism]	NA|270aa|up_8|NZ_LS483368.1_484528_485338_-	PRK15065, PRK15065, mannose/fructose/sorbose family PTS transporter subunit IIC	NA|330aa|up_7|NZ_LS483368.1_485508_486498_-	PRK15088, PRK15088, PTS system mannose-specific transporter subunits IIAB; Provisional	NA|271aa|up_6|NZ_LS483368.1_486849_487662_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|487aa|up_5|NZ_LS483368.1_487920_489381_+	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]	NA|148aa|up_4|NZ_LS483368.1_489749_490193_+	COG0802, COG0802, Predicted ATPase or kinase [General function prediction only]	NA|176aa|up_3|NZ_LS483368.1_490185_490713_+	PRK10140, PRK10140, N-acetyltransferase	NA|421aa|up_2|NZ_LS483368.1_490713_491976_+	COG1316, LytR, Transcriptional regulator [Transcription]	NA|99aa|up_1|NZ_LS483368.1_492145_492442_-	NA	NA|140aa|up_0|NZ_LS483368.1_492438_492858_-	COG0537, Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]	NA|242aa|down_0|NZ_LS483368.1_494334_495060_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|345aa|down_1|NZ_LS483368.1_495063_496098_+	COG4473, EcsB, Predicted ABC-type exoprotein transport system, permease component [Intracellular trafficking and secretion]	NA|264aa|down_2|NZ_LS483368.1_496160_496952_+	COG0510, ycfN, Thiamine kinase and related kinases [Coenzyme transport and metabolism]	NA|212aa|down_3|NZ_LS483368.1_496951_497587_+	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|161aa|down_4|NZ_LS483368.1_498931_499414_+	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed	NA|385aa|down_5|NZ_LS483368.1_499523_500678_+	PRK12327, nusA, transcription elongation factor NusA; Provisional	NA|99aa|down_6|NZ_LS483368.1_500693_500990_+	COG2740, COG2740, Predicted nucleic-acid-binding protein implicated in transcription termination [Transcription]	NA|101aa|down_7|NZ_LS483368.1_500982_501285_+	PRK07283, PRK07283, YlxQ-related RNA-binding protein	NA|959aa|down_8|NZ_LS483368.1_501304_504181_+	PRK05306, infB, translation initiation factor IF-2; Validated	NA|117aa|down_9|NZ_LS483368.1_504370_504721_+	PRK00521, rbfA, 30S ribosome-binding factor RbfA
GCF_900475295.1_43188_D01	NZ_LS483368	Streptococcus equi subsp. zooepidemicus strain NCTC6176 chromosome 1	2	616577-617136	2,1,1	CRISPRCasFinder,PILER-CR,CRT	no	cas3,cas5,cas8c,cas7,cas4,cas1,cas2	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,RT,DinG,csm6	 Type I-U?,Type I-U,Type I-C	CGTCTCGCCTTTCATGGGCGAGCGGATTGAAATT,GTCTCGCCTTTCATGGGCGAGCGGATTGAAAT,GTCTCGCCTTTCATGGGCGAGCGGATTGAAATT	34,32,33	0	0	NA	NA	NA:NA:NA	8,7,7	8	TypeI-U?,TypeI-U,TypeI-C	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,RT,DinG,csm6	NA|372aa|up_9|NZ_LS483368.1_604592_605708_+,NA|110aa|up_8|NZ_LS483368.1_606168_606498_+,NA	NA|372aa|up_9|NZ_LS483368.1_604592_605708_+	NA	NA|110aa|up_8|NZ_LS483368.1_606168_606498_+	NA	NA|124aa|up_7|NZ_LS483368.1_606856_607228_+	pfam14021, TNT, Tuberculosis necrotizing toxin	cas3|818aa|up_6|NZ_LS483368.1_608287_610741_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|240aa|up_5|NZ_LS483368.1_610981_611701_+	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas8c|628aa|up_4|NZ_LS483368.1_611700_613584_+	cd09642, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas7|283aa|up_3|NZ_LS483368.1_613584_614433_+	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas4|224aa|up_2|NZ_LS483368.1_614434_615106_+	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense    mechanisms]	cas1|342aa|up_1|NZ_LS483368.1_615102_616128_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|98aa|up_0|NZ_LS483368.1_616138_616432_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|237aa|down_0|NZ_LS483368.1_617472_618183_+	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	NA|217aa|down_1|NZ_LS483368.1_618196_618847_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|371aa|down_2|NZ_LS483368.1_618864_619977_+	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|247aa|down_3|NZ_LS483368.1_620245_620986_+	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|573aa|down_4|NZ_LS483368.1_620982_622701_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|363aa|down_5|NZ_LS483368.1_622739_623828_+	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown]	NA|235aa|down_6|NZ_LS483368.1_623842_624547_+	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only]	NA|163aa|down_7|NZ_LS483368.1_624806_625295_+	cd04335, PrdX_deacylase, This CD includes bacterial (Agrobacterium tumefaciens and Caulobacter crescentus ProX, and Clostridium sticklandii PrdX) and eukaryotic (Plasmodium falciparum N-terminal ProRS editing domain) sequences	NA|524aa|down_8|NZ_LS483368.1_625817_627388_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|158aa|down_9|NZ_LS483368.1_627490_627964_-	COG1438, ArgR, Arginine repressor [Transcription]
GCF_900475295.1_43188_D01	NZ_LS483368	Streptococcus equi subsp. zooepidemicus strain NCTC6176 chromosome 1	3	909453-909562	3	CRISPRCasFinder	no		cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,RT,DinG,csm6	Orphan	CTGACTTGATGACAGCTTATACTAAAA	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,RT,DinG,csm6	NA|79aa|up_4|NZ_LS483368.1_903205_903442_-,NA|62aa|up_3|NZ_LS483368.1_903569_903755_-,NA|96aa|up_2|NZ_LS483368.1_903747_904035_-,NA|152aa|up_1|NZ_LS483368.1_904034_904490_-,NA|714aa|down_5|NZ_LS483368.1_913726_915868_+	NA|658aa|up_9|NZ_LS483368.1_895909_897883_+	pfam05738, Cna_B, Cna protein B-type domain	NA|481aa|up_8|NZ_LS483368.1_897904_899347_+	pfam16569, GramPos_pilinBB, Gram-positive pilin backbone subunit 2, Cna-B-like domain	NA|270aa|up_7|NZ_LS483368.1_899427_900237_+	cd05827, Sortase_C, Sortase domain found in class C sortases	NA|393aa|up_6|NZ_LS483368.1_900551_901730_+	pfam09028, Mac-1, Mac 1	NA|409aa|up_5|NZ_LS483368.1_901809_903036_+	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|79aa|up_4|NZ_LS483368.1_903205_903442_-	NA	NA|62aa|up_3|NZ_LS483368.1_903569_903755_-	NA	NA|96aa|up_2|NZ_LS483368.1_903747_904035_-	NA	NA|152aa|up_1|NZ_LS483368.1_904034_904490_-	NA	NA|1239aa|up_0|NZ_LS483368.1_905597_909314_+	TIGR02102, alkaline_amylopullulanase, pullulanase, extracellular, Gram-positive	NA|180aa|down_0|NZ_LS483368.1_909602_910142_+	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription]	NA|212aa|down_1|NZ_LS483368.1_910131_910767_+	pfam13490, zf-HC2, Putative zinc-finger	NA|232aa|down_2|NZ_LS483368.1_910894_911590_+	cd07750, PolyPPase_VTC_like, Polyphosphate(polyP) polymerase domain of yeast vacuolar transport chaperone (VTC) proteins VTC-2, -3 and- 4, and similar proteins	NA|226aa|down_3|NZ_LS483368.1_911603_912281_+	pfam16316, DUF4956, Domain of unknown function (DUF4956)	NA|478aa|down_4|NZ_LS483368.1_912286_913720_+	pfam08757, CotH, CotH kinase protein	NA|714aa|down_5|NZ_LS483368.1_913726_915868_+	NA	NA|467aa|down_6|NZ_LS483368.1_916009_917410_+	cd06423, CESA_like, CESA_like is  the cellulose synthase superfamily	NA|1074aa|down_7|NZ_LS483368.1_917620_920842_+	TIGR02774, putative_ATP-dependent_exonuclease_subunit_B, ATP-dependent nuclease subunit B	NA|1215aa|down_8|NZ_LS483368.1_920831_924476_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|375aa|down_9|NZ_LS483368.1_924741_925866_+	PRK07324, PRK07324, transaminase; Validated
GCF_900475295.1_43188_D01	NZ_LS483368	Streptococcus equi subsp. zooepidemicus strain NCTC6176 chromosome 1	4	1492815-1493744	2	CRT	no		cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,RT,DinG,csm6	Orphan	CCTAAACCAGAGCCTAAGCCTGAA	24	9	34	1492839-1492856|1492839-1492856|1492839-1492856|1492839-1492856|1492881-1492898|1492881-1492898|1492881-1492898|1492881-1492898|1492977-1492994|1492977-1492994|1492977-1492994|1492977-1492994|1493211-1493228|1493211-1493228|1493211-1493228|1493211-1493228|1493349-1493366|1493349-1493366|1493349-1493366|1493349-1493366|1493523-1493540|1493523-1493540|1493523-1493540|1493523-1493540|1493565-1493582|1493565-1493582|1493565-1493582|1493565-1493582|1493661-1493678|1493661-1493678|1493661-1493678|1493661-1493678|1493703-1493720|1493703-1493720	NZ_LS483368.1_549002-549019|NZ_LS483368.1_902635-902652|NZ_LS483368.1_902767-902784|NZ_LS483368.1_902779-902796|NZ_LS483368.1_549002-549019|NZ_LS483368.1_902635-902652|NZ_LS483368.1_902767-902784|NZ_LS483368.1_902779-902796|NZ_LS483368.1_549002-549019|NZ_LS483368.1_902635-902652|NZ_LS483368.1_902767-902784|NZ_LS483368.1_902779-902796|NZ_LS483368.1_549002-549019|NZ_LS483368.1_902635-902652|NZ_LS483368.1_902767-902784|NZ_LS483368.1_902779-902796|NZ_LS483368.1_549002-549019|NZ_LS483368.1_902635-902652|NZ_LS483368.1_902767-902784|NZ_LS483368.1_902779-902796|NZ_LS483368.1_549002-549019|NZ_LS483368.1_902635-902652|NZ_LS483368.1_902767-902784|NZ_LS483368.1_902779-902796|NZ_LS483368.1_549002-549019|NZ_LS483368.1_902635-902652|NZ_LS483368.1_902767-902784|NZ_LS483368.1_902779-902796|NZ_LS483368.1_549002-549019|NZ_LS483368.1_902635-902652|NZ_LS483368.1_902767-902784|NZ_LS483368.1_902779-902796|NZ_LS483368.1_1491565-1491582|NZ_LS483368.1_1545947-1545964	NA	18	18	Orphan	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,RT,DinG,csm6	NA,NA	NA|492aa|up_9|NZ_LS483368.1_1480153_1481629_-	PRK09441, PRK09441, cytoplasmic alpha-amylase; Reviewed	NA|334aa|up_8|NZ_LS483368.1_1481698_1482700_-	TIGR01481, catabolite_control_protein_A, catabolite control protein A	NA|362aa|up_7|NZ_LS483368.1_1482873_1483959_+	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|223aa|up_6|NZ_LS483368.1_1484316_1484985_+	cd02149, NfsB-like, nitroreductase similar to Escherichia coli NfsB	NA|309aa|up_5|NZ_LS483368.1_1485099_1486026_+	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1	NA|156aa|up_4|NZ_LS483368.1_1486309_1486777_-	PRK05422, smpB, SsrA-binding protein SmpB	NA|775aa|up_3|NZ_LS483368.1_1486779_1489104_-	TIGR02063, Ribonuclease_R, ribonuclease R	NA|79aa|up_2|NZ_LS483368.1_1489177_1489414_-	PRK06870, secG, preprotein translocase subunit SecG; Reviewed	NA|49aa|up_1|NZ_LS483368.1_1489459_1489606_-	PRK00595, rpmG, 50S ribosomal protein L33; Validated	NA|573aa|up_0|NZ_LS483368.1_1490091_1491810_+	NF012162, surf_Nterm_1, thioester-forming surface-anchored protein	NA|198aa|down_0|NZ_LS483368.1_1494062_1494656_-	PRK00081, coaE, dephospho-CoA kinase; Reviewed	NA|273aa|down_1|NZ_LS483368.1_1494655_1495474_-	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA|600aa|down_2|NZ_LS483368.1_1495948_1497748_-	pfam01301, Glyco_hydro_35, Glycosyl hydrolases family 35	NA|1547aa|down_3|NZ_LS483368.1_1497873_1502514_-	cd08023, GH16_laminarinase_like, Laminarinase, member of the glycosyl hydrolase family 16	NA|453aa|down_4|NZ_LS483368.1_1502686_1504045_-	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism]	NA|439aa|down_5|NZ_LS483368.1_1504109_1505426_-	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism]	NA|111aa|down_6|NZ_LS483368.1_1505418_1505751_-	COG1447, CelC, Phosphotransferase system cellobiose-specific component IIA [Carbohydrate transport and metabolism]	NA|106aa|down_7|NZ_LS483368.1_1505760_1506078_-	cd05564, PTS_IIB_chitobiose_lichenan, PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|300aa|down_8|NZ_LS483368.1_1506101_1507001_-	cd01299, Met_dep_hydrolase_A, Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site	NA|401aa|down_9|NZ_LS483368.1_1507180_1508383_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
