assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900475495.1_44626_H01	NZ_LS483386	Streptococcus pyogenes strain NCTC13742 chromosome 1	1	828928-829146	1	CRT	no		cas3,DinG,csm6,RT,DEDDh,csa3	Orphan	TGTTTTGAATGGTCCCAAAAC	21	0	0	NA	NA	II-A	3	3	Orphan	cas3,DinG,csm6,RT,DEDDh,csa3	NA|214aa|up_4|NZ_LS483386.1_824767_825409_+,NA	NA|264aa|up_9|NZ_LS483386.1_819189_819981_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|448aa|up_8|NZ_LS483386.1_819980_821324_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|284aa|up_7|NZ_LS483386.1_821430_822282_+	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|319aa|up_6|NZ_LS483386.1_822278_823235_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|452aa|up_5|NZ_LS483386.1_823288_824644_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|214aa|up_4|NZ_LS483386.1_824767_825409_+	NA	NA|377aa|up_3|NZ_LS483386.1_825471_826602_+	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|251aa|up_2|NZ_LS483386.1_826611_827364_+	COG3884, FatA, Acyl-ACP thioesterase [Lipid metabolism]	NA|255aa|up_1|NZ_LS483386.1_827363_828128_+	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|211aa|up_0|NZ_LS483386.1_828127_828760_+	COG4478, COG4478, Predicted membrane protein [Function unknown]	NA|611aa|down_0|NZ_LS483386.1_829789_831622_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|433aa|down_1|NZ_LS483386.1_831808_833107_+	PRK12678, PRK12678, transcription termination factor Rho; Provisional	NA|146aa|down_2|NZ_LS483386.1_833292_833730_+	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|340aa|down_3|NZ_LS483386.1_833859_834879_+	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|142aa|down_4|NZ_LS483386.1_835085_835511_+	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|164aa|down_5|NZ_LS483386.1_835537_836029_+	COG3444, COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism]	NA|270aa|down_6|NZ_LS483386.1_836045_836855_+	COG3715, ManY, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]	NA|276aa|down_7|NZ_LS483386.1_836851_837679_+	COG3716, ManZ, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID [Carbohydrate transport and metabolism]	NA|550aa|down_8|NZ_LS483386.1_837814_839464_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|263aa|down_9|NZ_LS483386.1_839467_840256_+	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
GCF_900475495.1_44626_H01	NZ_LS483386	Streptococcus pyogenes strain NCTC13742 chromosome 1	2	1322716-1322809	1	CRISPRCasFinder	no	cas3	cas3,DinG,csm6,RT,DEDDh,csa3	Unclear	AATCCACTCACCCGTGAAGGGTGAGAC	27	0	0	NA	NA	NA	1	1	Unclear	cas3,DinG,csm6,RT,DEDDh,csa3	NA,NA|186aa|down_8|NZ_LS483386.1_1332589_1333147_-	NA|227aa|up_9|NZ_LS483386.1_1311984_1312665_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|158aa|up_8|NZ_LS483386.1_1312806_1313280_+	COG1438, ArgR, Arginine repressor [Transcription]	NA|360aa|up_7|NZ_LS483386.1_1314176_1315256_-	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown]	NA|578aa|up_6|NZ_LS483386.1_1315328_1317062_-	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|247aa|up_5|NZ_LS483386.1_1317058_1317799_-	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|369aa|up_4|NZ_LS483386.1_1317886_1318993_-	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|208aa|up_3|NZ_LS483386.1_1319035_1319659_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|237aa|up_2|NZ_LS483386.1_1319671_1320382_-	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	NA|311aa|up_1|NZ_LS483386.1_1320602_1321535_-	cd12827, EcCorA_ZntB-like_u2, uncharacterized bacterial subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB family	NA|320aa|up_0|NZ_LS483386.1_1321626_1322586_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	cas3|416aa|down_0|NZ_LS483386.1_1323159_1324407_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|883aa|down_1|NZ_LS483386.1_1324560_1327209_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|188aa|down_2|NZ_LS483386.1_1327210_1327774_-	pfam13238, AAA_18, AAA domain	NA|132aa|down_3|NZ_LS483386.1_1328374_1328770_-	PRK07758, PRK07758, hypothetical protein; Provisional	NA|85aa|down_4|NZ_LS483386.1_1328787_1329042_-	pfam08930, DUF1912, Domain of unknown function (DUF1912)	NA|379aa|down_5|NZ_LS483386.1_1329354_1330491_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|109aa|down_6|NZ_LS483386.1_1330540_1330867_-	pfam05595, DUF771, Domain of unknown function (DUF771)	NA|254aa|down_7|NZ_LS483386.1_1331803_1332565_-	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain	NA|186aa|down_8|NZ_LS483386.1_1332589_1333147_-	NA	NA|451aa|down_9|NZ_LS483386.1_1333146_1334499_-	pfam18013, Phage_lysozyme2, Phage tail lysozyme
