The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LS483397	Streptococcus uberis strain NCTC3858 chromosome 1	1975601	111988	160164	1975601	capsid,holin,tRNA,tail,terminase,portal	Streptococcus_phage(79.55%)	57	NA	NA
WP_037593000.1|111988_113245_-|tRNA	tyrosine--tRNA ligase	tRNA	K4F5T3	Cronobacter_phage	39.2	9.9e-72
WP_037592999.1|113336_115655_+	penicillin-binding protein	NA	NA	NA	NA	NA
WP_012657670.1|115918_119485_+	DNA-directed RNA polymerase subunit beta	NA	A0A2P0VMZ3	Tetraselmis_virus	25.9	2.4e-38
WP_111685884.1|119576_123215_+	DNA-directed RNA polymerase subunit beta'	NA	R4TQM7	Phaeocystis_globosa_virus	25.4	1.4e-65
WP_041817508.1|123335_123701_+	DUF1033 family protein	NA	NA	NA	NA	NA
WP_037592994.1|123773_124715_+	Flp pilus assembly complex ATPase component TadA	NA	NA	NA	NA	NA
WP_037593025.1|124728_125682_+	type II secretion system F family protein	NA	NA	NA	NA	NA
WP_037592992.1|125762_127208_-	recombinase family protein	NA	E8ZDY7	Streptococcus_phage	72.8	4.0e-202
WP_037592991.1|127357_127807_-	Ltp family lipoprotein	NA	A0A097BY93	Leuconostoc_phage	51.7	8.0e-08
WP_037593023.1|127859_128237_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A1P8VVK5	Streptococcus_phage	68.8	3.0e-48
WP_037592990.1|128220_128583_-	helix-turn-helix transcriptional regulator	NA	M1PRN5	Streptococcus_phage	66.1	3.6e-35
WP_037592989.1|128773_128974_+	helix-turn-helix transcriptional regulator	NA	A0A1X9I583	Streptococcus_phage	66.2	1.7e-18
WP_037592987.1|129020_129746_+	phage antirepressor KilAC domain-containing protein	NA	Q938N5	Temperate_phage	79.2	6.9e-110
WP_037592986.1|129757_130099_+	hypothetical protein	NA	NA	NA	NA	NA
WP_037592984.1|130099_130312_-	hypothetical protein	NA	NA	NA	NA	NA
WP_037592983.1|130461_130647_+	helix-turn-helix transcriptional regulator	NA	J7KH19	Streptococcus_phage	78.7	1.1e-19
WP_170123115.1|130709_130868_+	hypothetical protein	NA	A0A141E1D2	Streptococcus_phage	73.1	2.8e-16
WP_037592981.1|131394_131676_+	hypothetical protein	NA	A0A1S5SA04	Streptococcus_phage	46.7	1.8e-13
WP_037592980.1|131675_131936_+	hypothetical protein	NA	NA	NA	NA	NA
WP_037592979.1|132083_132263_+	hypothetical protein	NA	A0A1S5SAF4	Streptococcus_phage	64.4	3.0e-14
WP_037592978.1|132259_133033_+	phage recombination protein Bet	NA	A0A1S5SFP4	Streptococcus_phage	77.4	1.8e-108
WP_037592977.1|133043_134072_+	DUF1351 domain-containing protein	NA	A0A1S5SFI4	Streptococcus_phage	66.5	1.4e-116
WP_037592976.1|134074_134344_+	hypothetical protein	NA	M1Q1G3	Streptococcus_phage	96.6	4.0e-47
WP_037592975.1|134353_134677_+	hypothetical protein	NA	M1PS51	Streptococcus_phage	52.6	2.8e-18
WP_037592974.1|134673_134853_+	hypothetical protein	NA	NA	NA	NA	NA
WP_037592972.1|135322_135664_+	hypothetical protein	NA	M1PKX3	Streptococcus_phage	41.1	1.4e-12
WP_037592971.1|135663_136092_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A141E1Z1	Streptococcus_phage	91.4	1.9e-70
WP_037592970.1|136082_136397_+	DUF1372 family protein	NA	A1EAD7	Streptococcus_phage	73.6	5.6e-32
WP_111685885.1|136396_136846_+	hypothetical protein	NA	A0A1C9LX52	Streptococcus_phage	54.2	8.5e-34
WP_037592968.1|136826_137072_+	hypothetical protein	NA	W6LP69	Streptococcus_phage	50.0	3.3e-08
WP_037592967.1|137068_137383_+	hypothetical protein	NA	A0A1S5S7Z8	Streptococcus_phage	49.5	1.6e-18
WP_037592964.1|137457_137874_+	DUF1492 domain-containing protein	NA	A0A141E1Y4	Streptococcus_phage	81.2	1.3e-55
WP_037592962.1|138033_138765_+|terminase	terminase	terminase	A0A1L2JY44	Aeribacillus_phage	37.6	1.6e-26
WP_037592960.1|138733_140032_+|terminase	PBSX family phage terminase large subunit	terminase	A0A286QNX6	Streptococcus_phage	65.1	2.5e-163
WP_037593022.1|140094_141555_+|portal	phage portal protein	portal	A0A286QNN2	Streptococcus_phage	72.2	5.2e-205
WP_037592958.1|141559_143182_+|capsid	phage capsid protein	capsid	A0A286QMS2	Streptococcus_phage	70.9	3.8e-164
WP_037592956.1|143178_143370_+	hypothetical protein	NA	NA	NA	NA	NA
WP_037592949.1|143420_143693_+	hypothetical protein	NA	NA	NA	NA	NA
WP_037592944.1|143860_144424_+	scaffolding protein	NA	A0A2H4JBH4	uncultured_Caudovirales_phage	66.5	1.0e-52
WP_037592941.1|144444_145314_+	hypothetical protein	NA	D2J061	Enterococcus_phage	65.4	3.5e-100
WP_000032859.1|145327_145486_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001051385.1|145491_145692_+	hypothetical protein	NA	NA	NA	NA	NA
WP_170123126.1|145721_146117_+	hypothetical protein	NA	C5IUJ7	Streptococcus_phage	55.4	7.5e-34
WP_037592938.1|146103_146445_+	phage protein Gp9	NA	A0A286QMS6	Streptococcus_phage	64.5	1.6e-40
WP_037592937.1|146444_146807_+|capsid	phage capsid protein	capsid	A0A286QMS1	Streptococcus_phage	67.2	2.9e-40
WP_111685887.1|146803_147205_+|capsid	capsid protein	capsid	A0A2H4JHL9	uncultured_Caudovirales_phage	61.9	4.4e-42
WP_037592936.1|147205_147667_+	hypothetical protein	NA	A0A1P8VVM4	Streptococcus_phage	51.3	2.1e-35
WP_006739703.1|147729_148098_+	hypothetical protein	NA	A0A286QNZ4	Streptococcus_phage	51.2	1.7e-24
WP_037592934.1|148099_148699_+	hypothetical protein	NA	A0A286QMS7	Streptococcus_phage	46.9	6.2e-48
WP_037592930.1|148714_152092_+	tape measure protein	NA	A0A286QN99	Streptococcus_phage	36.8	5.5e-08
WP_111685888.1|152088_153531_+|tail	phage tail family protein	tail	K4JTI1	Streptococcus_phage	32.3	6.9e-61
WP_037592928.1|153530_156311_+|tail	phage tail protein	tail	A0A286QQK2	Streptococcus_phage	33.2	2.2e-119
WP_037592924.1|156324_158334_+	DUF859 domain-containing protein	NA	A0A286QNJ5	Streptococcus_phage	57.5	1.7e-203
WP_037592923.1|158346_158745_+	DUF1366 domain-containing protein	NA	A0A1P8VVN2	Streptococcus_phage	35.7	4.2e-08
WP_170123116.1|158807_158966_+	hypothetical protein	NA	A0A1X9I5T1	Streptococcus_phage	67.4	5.1e-10
WP_111685889.1|158978_159449_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_037592922.1|159450_160164_+	lysin	NA	Q2I7P1	Streptococcus_phage	84.0	1.7e-113
>prophage 2
NZ_LS483397	Streptococcus uberis strain NCTC3858 chromosome 1	1975601	193045	201317	1975601		Streptococcus_phage(66.67%)	10	NA	NA
WP_037592882.1|193045_193417_-	type II toxin-antitoxin system death-on-curing family toxin	NA	D0R0D2	Streptococcus_phage	64.2	3.5e-41
WP_037592880.1|193413_193671_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	A0A1X9I6A0	Streptococcus_phage	71.8	2.2e-26
WP_037592879.1|193862_195113_-	toxic anion resistance protein	NA	M1PLC8	Streptococcus_phage	65.9	8.2e-127
WP_037592877.1|195121_195982_-	hypothetical protein	NA	M1PFV6	Streptococcus_phage	37.8	1.5e-26
WP_012657706.1|196336_197629_+	adenylosuccinate synthase	NA	G5CQQ4	Megavirus	36.7	8.6e-71
WP_170123117.1|197752_197926_+	hypothetical protein	NA	NA	NA	NA	NA
WP_111685896.1|198007_198364_+	DUF2200 domain-containing protein	NA	NA	NA	NA	NA
WP_046390817.1|198590_199634_+	BMP family protein	NA	NA	NA	NA	NA
WP_037592876.1|199673_200447_-	glycyl-radical enzyme activating protein	NA	NA	NA	NA	NA
WP_037592875.1|200573_201317_+	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	26.0	5.4e-17
>prophage 3
NZ_LS483397	Streptococcus uberis strain NCTC3858 chromosome 1	1975601	480736	495392	1975601		Streptococcus_phage(85.71%)	20	NA	NA
WP_012657970.1|480736_481501_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.1	3.3e-17
WP_037592418.1|481500_482211_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	26.7	1.1e-16
WP_037592416.1|482280_482943_+	CBS domain-containing protein	NA	M1NSC5	Streptococcus_phage	57.9	3.5e-60
WP_012657973.1|483026_483662_+	dTMP kinase	NA	M1PSC7	Streptococcus_phage	63.8	2.3e-69
WP_037592413.1|483677_484553_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	53.2	5.8e-79
WP_037592412.1|484549_485350_+	signal peptidase II	NA	NA	NA	NA	NA
WP_012657976.1|485339_485693_+	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	57.5	2.3e-26
WP_046388571.1|485670_486534_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	72.4	8.5e-115
WP_037592411.1|486659_487055_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012657979.1|487087_487720_-	hypothetical protein	NA	NA	NA	NA	NA
WP_037592410.1|487843_488938_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	76.6	3.4e-161
WP_037592409.1|488953_489502_+	N-acetyltransferase	NA	M1PSC3	Streptococcus_phage	53.9	2.6e-48
WP_037592534.1|489559_490735_+	phosphoglycerate dehydrogenase	NA	M1NSB9	Streptococcus_phage	77.6	4.6e-172
WP_046390851.1|490783_491323_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	54.2	5.1e-41
WP_037592408.1|491262_491616_+	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	60.9	1.6e-35
WP_012657985.1|491648_492551_-	cation transporter	NA	M1Q1N9	Streptococcus_phage	48.3	2.9e-73
WP_037592407.1|492948_493365_-	VOC family protein	NA	NA	NA	NA	NA
WP_012657987.1|493386_493761_-	glyoxalase/bleomycin resistance/extradiol dioxygenase family protein	NA	NA	NA	NA	NA
WP_037592533.1|493900_494563_-	DNA alkylation repair protein	NA	NA	NA	NA	NA
WP_037592406.1|494564_495392_-	exodeoxyribonuclease III	NA	M1PSC0	Streptococcus_phage	78.0	3.3e-124
>prophage 4
NZ_LS483397	Streptococcus uberis strain NCTC3858 chromosome 1	1975601	499299	536991	1975601	bacteriocin,tRNA	Staphylococcus_phage(25.0%)	42	NA	NA
WP_037592403.1|499299_501306_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	35.3	5.6e-85
WP_037592401.1|502362_503706_+	branched-chain amino acid transport system II carrier protein	NA	NA	NA	NA	NA
WP_052713356.1|503813_504146_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012657998.1|504344_504581_+	DUF2829 domain-containing protein	NA	NA	NA	NA	NA
WP_012657999.1|504573_505272_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
WP_037592400.1|505368_506331_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_037592399.1|506461_507838_+	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA	A0A2K9L4K9	Tupanvirus	38.1	2.4e-34
WP_012658002.1|507858_508416_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_037592398.1|508412_508673_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012658004.1|508688_509381_+	5'-methylthioadenosine/adenosylhomocysteine nucleosidase	NA	NA	NA	NA	NA
WP_037592397.1|509415_510063_-	metal-dependent transcriptional regulator	NA	NA	NA	NA	NA
WP_037592396.1|510208_511141_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_037592395.1|511200_511923_+	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.7	2.9e-15
WP_037592531.1|511950_512766_+	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_037592394.1|513273_514086_-	peptidylprolyl isomerase	NA	A0A2H4UTF4	Bodo_saltans_virus	39.0	1.8e-21
WP_111685932.1|514181_516590_+	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	51.7	3.2e-87
WP_012658012.1|516618_516975_-	DUF3397 domain-containing protein	NA	NA	NA	NA	NA
WP_037592392.1|517219_517645_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_012658014.1|517750_518440_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_012658015.1|518579_519308_+	UMP kinase	NA	NA	NA	NA	NA
WP_037592390.1|519343_519901_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_037592389.1|520015_520870_+	S1 RNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_012658018.1|520953_521463_+	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_012658019.1|521459_521675_+	YozE family protein	NA	NA	NA	NA	NA
WP_012658020.1|521855_522935_+	PhoH family protein	NA	W8D063	Erwinia_phage	47.5	7.3e-47
WP_012658021.1|522979_523555_+	uracil-DNA glycosylase family protein	NA	NA	NA	NA	NA
WP_012658022.1|523647_524148_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_037592387.1|524125_524530_+	diacylglycerol kinase family protein	NA	NA	NA	NA	NA
WP_012658024.1|524551_525451_+	GTPase Era	NA	NA	NA	NA	NA
WP_012658025.1|525861_526248_+	hypothetical protein	NA	NA	NA	NA	NA
WP_111685933.1|526306_527098_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012658028.1|527700_528330_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	31.0	3.5e-17
WP_012658029.1|528757_529498_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_170123120.1|530024_530840_+	GHKL domain-containing protein	NA	NA	NA	NA	NA
WP_080502297.1|530849_530996_-|bacteriocin	ComC/BlpC family leader-containing pheromone/bacteriocin	bacteriocin	NA	NA	NA	NA
WP_012658032.1|531031_533185_-	peptide cleavage/export ABC transporter	NA	W8CYL7	Bacillus_phage	28.8	9.1e-41
WP_111686027.1|533466_533649_+|bacteriocin	ComC/BlpC family peptide pheromone/bacteriocin	bacteriocin	NA	NA	NA	NA
WP_046388584.1|534267_534492_+|bacteriocin	bacteriocin BlpM	bacteriocin	NA	NA	NA	NA
WP_012658034.1|534502_534703_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012658036.1|535379_535625_+|bacteriocin	garvicin Q family class II bacteriocin	bacteriocin	NA	NA	NA	NA
WP_012658037.1|535627_535927_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
WP_012658038.1|536763_536991_+|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
>prophage 5
NZ_LS483397	Streptococcus uberis strain NCTC3858 chromosome 1	1975601	982889	991143	1975601		Bacillus_virus(33.33%)	8	NA	NA
WP_037592124.1|982889_983810_+	type I pantothenate kinase	NA	A0A1B1ISL9	uncultured_Mediterranean_phage	34.8	2.1e-31
WP_160463058.1|983869_984112_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_037592122.1|984188_985499_-	HAMP domain-containing histidine kinase	NA	Q8QNA2	Ectocarpus_siliculosus_virus	29.2	2.2e-05
WP_012658457.1|985491_986166_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	33.2	5.2e-27
WP_037592121.1|986287_988825_-	M1 family metallopeptidase	NA	A0A0P0IY26	Acinetobacter_phage	25.1	2.2e-70
WP_012658459.1|988895_989549_-	phosphate signaling complex protein PhoU	NA	NA	NA	NA	NA
WP_012658460.1|989568_990327_-	phosphate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.5	6.5e-18
WP_012658461.1|990339_991143_-	phosphate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.8	5.3e-18
