assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900475705.1_44858_B01	NZ_LS483407	Streptococcus pyogenes strain NCTC13744 chromosome 1	1	117860-117955	1	CRISPRCasFinder	no		cas3,DinG,csm6,cas9,cas1,cas2,csn2,DEDDh,csa3	Orphan	CTAGATGGTGAAGAAGTCCCAGAA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,csm6,cas9,cas1,cas2,csn2,DEDDh,csa3	NA,NA|220aa|down_3|NZ_LS483407.1_125902_126562_-	NA|257aa|up_9|NZ_LS483407.1_108158_108929_-	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|356aa|up_8|NZ_LS483407.1_108976_110044_-	TIGR03107, Glutamyl_aminopeptidase, glutamyl aminopeptidase	NA|98aa|up_7|NZ_LS483407.1_110499_110793_+	pfam15513, DUF4651, Domain of unknown function (DUF4651)	NA|106aa|up_6|NZ_LS483407.1_110789_111107_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|209aa|up_5|NZ_LS483407.1_111124_111751_+	cd02796, tRNA_bind_bactPheRS, tRNA-binding-domain-containing prokaryotic phenylalanly tRNA synthetase (PheRS) beta chain	NA|132aa|up_4|NZ_LS483407.1_111902_112298_+	PRK07274, PRK07274, single-stranded DNA-binding protein; Provisional	NA|214aa|up_3|NZ_LS483407.1_112557_113199_-	COG1428, COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism]	NA|326aa|up_2|NZ_LS483407.1_113218_114196_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|291aa|up_1|NZ_LS483407.1_114182_115055_-	PRK00114, hslO, Hsp33 family molecular chaperone HslO	NA|498aa|up_0|NZ_LS483407.1_115201_116695_-	pfam08270, PRD_Mga, M protein trans-acting positive regulator (MGA) PRD domain	NA|1037aa|down_0|NZ_LS483407.1_120005_123116_+	pfam17802, SpaA, Prealbumin-like fold domain	NA|550aa|down_1|NZ_LS483407.1_123154_124804_+	pfam18002, T6_Ig_like, T6 antigen Ig like domain	NA|281aa|down_2|NZ_LS483407.1_124874_125717_+	cd05827, Sortase_C, Sortase domain found in class C sortases	NA|220aa|down_3|NZ_LS483407.1_125902_126562_-	NA	NA|469aa|down_4|NZ_LS483407.1_126915_128322_+	COG2031, AtoE, Short chain fatty acids transporter [Lipid metabolism]	NA|304aa|down_5|NZ_LS483407.1_128392_129304_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|395aa|down_6|NZ_LS483407.1_129424_130609_+	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|220aa|down_7|NZ_LS483407.1_130620_131280_+	COG1788, AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism]	NA|216aa|down_8|NZ_LS483407.1_131282_131930_+	TIGR02428, 3-oxoadipate_CoA-transferase_subunit_B, 3-oxoacid CoA-transferase, B subunit	NA|227aa|down_9|NZ_LS483407.1_132051_132732_-	COG2964, COG2964, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_900475705.1_44858_B01	NZ_LS483407	Streptococcus pyogenes strain NCTC13744 chromosome 1	2	781240-781605	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas9,cas1,cas2,csn2	cas3,DinG,csm6,cas9,cas1,cas2,csn2,DEDDh,csa3	Type II-B,Type II-C,Type II-A	GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC,GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC,GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	36,36,36	0	0	NA	NA	II-A:II-A:II-A	4,5,5	5	TypeII-B,TypeII-C,TypeII-A	cas3,DinG,csm6,cas9,cas1,cas2,csn2,DEDDh,csa3	NA|214aa|up_8|NZ_LS483407.1_770700_771342_+,NA	NA|452aa|up_9|NZ_LS483407.1_769221_770577_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|214aa|up_8|NZ_LS483407.1_770700_771342_+	NA	NA|377aa|up_7|NZ_LS483407.1_771404_772535_+	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|251aa|up_6|NZ_LS483407.1_772544_773297_+	COG3884, FatA, Acyl-ACP thioesterase [Lipid metabolism]	NA|255aa|up_5|NZ_LS483407.1_773296_774061_+	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|211aa|up_4|NZ_LS483407.1_774060_774693_+	COG4478, COG4478, Predicted membrane protein [Function unknown]	cas9|1369aa|up_3|NZ_LS483407.1_775171_779278_+	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	cas1|290aa|up_2|NZ_LS483407.1_779277_780147_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|114aa|up_1|NZ_LS483407.1_780143_780485_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|221aa|up_0|NZ_LS483407.1_780474_781137_+	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	NA|611aa|down_0|NZ_LS483407.1_782248_784081_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|491aa|down_1|NZ_LS483407.1_784269_785742_+	PRK12678, PRK12678, transcription termination factor Rho; Provisional	NA|146aa|down_2|NZ_LS483407.1_785927_786365_+	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|340aa|down_3|NZ_LS483407.1_786494_787514_+	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|142aa|down_4|NZ_LS483407.1_787720_788146_+	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|164aa|down_5|NZ_LS483407.1_788164_788656_+	COG3444, COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism]	NA|270aa|down_6|NZ_LS483407.1_788672_789482_+	COG3715, ManY, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]	NA|276aa|down_7|NZ_LS483407.1_789478_790306_+	COG3716, ManZ, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID [Carbohydrate transport and metabolism]	NA|550aa|down_8|NZ_LS483407.1_790441_792091_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|263aa|down_9|NZ_LS483407.1_792094_792883_+	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
GCF_900475705.1_44858_B01	NZ_LS483407	Streptococcus pyogenes strain NCTC13744 chromosome 1	3	960201-960302	3	CRISPRCasFinder	no		cas3,DinG,csm6,cas9,cas1,cas2,csn2,DEDDh,csa3	Orphan	AATAATTGGTATAGTCTAATTATA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,csm6,cas9,cas1,cas2,csn2,DEDDh,csa3	NA,NA|262aa|down_6|NZ_LS483407.1_968132_968918_+	NA|83aa|up_9|NZ_LS483407.1_947918_948167_-	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|773aa|up_8|NZ_LS483407.1_948529_950848_-	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|441aa|up_7|NZ_LS483407.1_951376_952699_+	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism]	NA|412aa|up_6|NZ_LS483407.1_952818_954054_+	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|258aa|up_5|NZ_LS483407.1_954423_955197_-	pfam07373, CAMP_factor, CAMP factor (Cfa)	NA|279aa|up_4|NZ_LS483407.1_955565_956402_-	cd00996, PBP2_AatB_like, Polar amino acids-binding domain of ATP-binding cassette transporter-like systems that belong to the type 2 periplasmic binding fold protein superfamily	NA|210aa|up_3|NZ_LS483407.1_956417_957047_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|214aa|up_2|NZ_LS483407.1_957056_957698_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|112aa|up_1|NZ_LS483407.1_957804_958140_-	COG2824, PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]	NA|605aa|up_0|NZ_LS483407.1_958335_960150_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|186aa|down_0|NZ_LS483407.1_960325_960883_-	TIGR02227, Inactive_signal_peptidase_IA	NA|501aa|down_1|NZ_LS483407.1_961100_962603_-	PRK05826, PRK05826, pyruvate kinase; Provisional	NA|338aa|down_2|NZ_LS483407.1_962665_963679_-	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|1037aa|down_3|NZ_LS483407.1_963758_966869_-	PRK07279, dnaE, DNA polymerase III DnaE; Reviewed	NA|124aa|down_4|NZ_LS483407.1_967053_967425_+	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|233aa|down_5|NZ_LS483407.1_967424_968123_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|262aa|down_6|NZ_LS483407.1_968132_968918_+	NA	NA|205aa|down_7|NZ_LS483407.1_969048_969663_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|207aa|down_8|NZ_LS483407.1_970403_971024_+	pfam12978, DUF3862, Domain of Unknown Function with PDB structure (DUF3862)	NA|755aa|down_9|NZ_LS483407.1_971280_973545_-	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins
