assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900475725.1_46166_D01	NZ_LS483413	Streptococcus dysgalactiae subsp. equisimilis strain NCTC7136 chromosome 1	1	922049-923674	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas5,cas8c,cas7,cas4,cas1,cas2	cas3,DEDDh,DinG,cas5,cas8c,cas7,cas4,cas1,cas2,cas9,csn2,csm6,csa3	Type I-C,Type I-U, Type I-U?	GTCTCACCCTTCGCGGGTGAGTGGATTGAAAT,GTCTCACCCTTCGCGGGTGAGTGGATTGAAAT,GTCTCACCCTTCGCGGGTGAGTGGATTGAAAT	32,32,32	3	3	922081-922113|923012-923044|923609-923642	NZ_LS483413.1_8520-8552|NZ_LS483413.1_1646790-1646822|NZ_LS483413.1_720806-720839	I-C:I-C:I-C	23,24,24	24	TypeI-C,TypeI-U,TypeI-U?	cas3,DEDDh,DinG,cas5,cas8c,cas7,cas4,cas1,cas2,cas9,csn2,csm6,csa3	NA,NA	NA|197aa|up_9|NZ_LS483413.1_909798_910389_+	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|188aa|up_8|NZ_LS483413.1_910385_910949_+	pfam13238, AAA_18, AAA domain	NA|883aa|up_7|NZ_LS483413.1_910950_913599_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	cas3|808aa|up_6|NZ_LS483413.1_913865_916289_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|243aa|up_5|NZ_LS483413.1_916421_917150_+	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas8c|632aa|up_4|NZ_LS483413.1_917149_919045_+	cd09642, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas7|283aa|up_3|NZ_LS483413.1_919049_919898_+	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas4|225aa|up_2|NZ_LS483413.1_919899_920574_+	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense    mechanisms]	cas1|342aa|up_1|NZ_LS483413.1_920570_921596_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|98aa|up_0|NZ_LS483413.1_921606_921900_+	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	NA|320aa|down_0|NZ_LS483413.1_923799_924759_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|311aa|down_1|NZ_LS483413.1_924850_925783_+	cd12827, EcCorA_ZntB-like_u2, uncharacterized bacterial subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB family	NA|237aa|down_2|NZ_LS483413.1_926002_926713_+	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	NA|208aa|down_3|NZ_LS483413.1_926725_927349_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|369aa|down_4|NZ_LS483413.1_927391_928498_+	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|247aa|down_5|NZ_LS483413.1_928585_929326_+	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|578aa|down_6|NZ_LS483413.1_929322_931056_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|360aa|down_7|NZ_LS483413.1_931128_932208_+	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown]	NA|239aa|down_8|NZ_LS483413.1_932221_932938_+	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only]	NA|158aa|down_9|NZ_LS483413.1_933102_933576_-	COG1438, ArgR, Arginine repressor [Transcription]
GCF_900475725.1_46166_D01	NZ_LS483413	Streptococcus dysgalactiae subsp. equisimilis strain NCTC7136 chromosome 1	2	1223149-1224109	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas9,cas1,cas2,csn2	cas3,DEDDh,DinG,cas5,cas8c,cas7,cas4,cas1,cas2,cas9,csn2,csm6,csa3	Type II-C,Type II-A,Type II-B	GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC,GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC,GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAA	36,36,34	3	3	1223317-1223346|1223383-1223412|1223516-1223545	NZ_LS483413.1_730494-730465|NZ_LS483413.1_715482-715453|NZ_LS483413.1_1818218-1818189	II-A,II-B:II-A,II-B:II-A,II-B	14,14,8	14	TypeII-C,TypeII-A,TypeII-B	cas3,DEDDh,DinG,cas5,cas8c,cas7,cas4,cas1,cas2,cas9,csn2,csm6,csa3	NA|214aa|up_8|NZ_LS483413.1_1212602_1213244_+,NA	NA|452aa|up_9|NZ_LS483413.1_1211123_1212479_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|214aa|up_8|NZ_LS483413.1_1212602_1213244_+	NA	NA|377aa|up_7|NZ_LS483413.1_1213305_1214436_+	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|251aa|up_6|NZ_LS483413.1_1214445_1215198_+	COG3884, FatA, Acyl-ACP thioesterase [Lipid metabolism]	NA|255aa|up_5|NZ_LS483413.1_1215197_1215962_+	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|211aa|up_4|NZ_LS483413.1_1215961_1216594_+	COG4478, COG4478, Predicted membrane protein [Function unknown]	cas9|1372aa|up_3|NZ_LS483413.1_1217071_1221187_+	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	cas1|290aa|up_2|NZ_LS483413.1_1221186_1222056_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|114aa|up_1|NZ_LS483413.1_1222052_1222394_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|221aa|up_0|NZ_LS483413.1_1222383_1223046_+	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	NA|153aa|down_0|NZ_LS483413.1_1224224_1224683_+	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated	NA|611aa|down_1|NZ_LS483413.1_1224752_1226585_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|146aa|down_2|NZ_LS483413.1_1226760_1227198_+	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|217aa|down_3|NZ_LS483413.1_1227210_1227861_+	COG1418, COG1418, Predicted HD superfamily hydrolase [General function prediction only]	NA|77aa|down_4|NZ_LS483413.1_1228068_1228299_+	pfam01721, Bacteriocin_II, Class II bacteriocin	NA|99aa|down_5|NZ_LS483413.1_1228298_1228595_+	pfam08951, EntA_Immun, Enterocin A Immunity	NA|390aa|down_6|NZ_LS483413.1_1228784_1229954_+	pfam11187, DUF2974, Protein of unknown function (DUF2974)	NA|340aa|down_7|NZ_LS483413.1_1230064_1231084_+	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|142aa|down_8|NZ_LS483413.1_1231290_1231716_+	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|164aa|down_9|NZ_LS483413.1_1231735_1232227_+	COG3444, COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism]
GCF_900475725.1_46166_D01	NZ_LS483413	Streptococcus dysgalactiae subsp. equisimilis strain NCTC7136 chromosome 1	3	1579993-1580108	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,cas5,cas8c,cas7,cas4,cas1,cas2,cas9,csn2,csm6,csa3	Orphan	ACTTCGTCAACTTCAGGCGTTGGTTGGCCTTC	32	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,cas5,cas8c,cas7,cas4,cas1,cas2,cas9,csn2,csm6,csa3	NA|248aa|up_8|NZ_LS483413.1_1570718_1571462_-,NA|57aa|up_5|NZ_LS483413.1_1573557_1573728_-,NA	NA|700aa|up_9|NZ_LS483413.1_1568562_1570662_+	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]	NA|248aa|up_8|NZ_LS483413.1_1570718_1571462_-	NA	NA|200aa|up_7|NZ_LS483413.1_1571605_1572205_-	PRK00454, engB, GTP-binding protein YsxC; Reviewed	NA|410aa|up_6|NZ_LS483413.1_1572214_1573444_-	PRK05342, clpX, ATP-dependent Clp protease ATP-binding subunit ClpX	NA|57aa|up_5|NZ_LS483413.1_1573557_1573728_-	NA	NA|166aa|up_4|NZ_LS483413.1_1573747_1574245_-	pfam00186, DHFR_1, Dihydrofolate reductase	NA|280aa|up_3|NZ_LS483413.1_1574325_1575165_-	PRK01827, thyA, thymidylate synthase; Reviewed	NA|394aa|up_2|NZ_LS483413.1_1575383_1576565_+	TIGR01835, 3-hydroxy-3-methylglutaryl_CoA_synthase, 3-hydroxy-3-methylglutaryl CoA synthase, prokaryotic clade	NA|426aa|up_1|NZ_LS483413.1_1576545_1577823_+	cd00644, HMG-CoA_reductase_classII, Class II hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR)	NA|506aa|up_0|NZ_LS483413.1_1578010_1579528_+	pfam08270, PRD_Mga, M protein trans-acting positive regulator (MGA) PRD domain	NA|1103aa|down_0|NZ_LS483413.1_1580445_1583754_-	pfam17961, Big_8, Bacterial Ig domain	NA|509aa|down_1|NZ_LS483413.1_1584066_1585593_+	pfam08270, PRD_Mga, M protein trans-acting positive regulator (MGA) PRD domain	NA|331aa|down_2|NZ_LS483413.1_1585738_1586731_-	PRK05437, PRK05437, isopentenyl pyrophosphate isomerase; Provisional	NA|338aa|down_3|NZ_LS483413.1_1586717_1587731_-	COG1577, ERG12, Mevalonate kinase [Lipid metabolism]	NA|315aa|down_4|NZ_LS483413.1_1587723_1588668_-	TIGR01240, Diphosphomevalonate_decarboxylase, diphosphomevalonate decarboxylase	NA|293aa|down_5|NZ_LS483413.1_1588649_1589528_-	COG1577, ERG12, Mevalonate kinase [Lipid metabolism]	NA|411aa|down_6|NZ_LS483413.1_1589821_1591054_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|223aa|down_7|NZ_LS483413.1_1591062_1591731_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|217aa|down_8|NZ_LS483413.1_1591733_1592384_-	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|675aa|down_9|NZ_LS483413.1_1592602_1594627_+	cd07412, MPP_YhcR_N, Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain
GCF_900475725.1_46166_D01	NZ_LS483413	Streptococcus dysgalactiae subsp. equisimilis strain NCTC7136 chromosome 1	4	1866188-1866265	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,cas5,cas8c,cas7,cas4,cas1,cas2,cas9,csn2,csm6,csa3	Orphan	ACCACTCGCTCTTTGTCTCTAGGCTC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,cas5,cas8c,cas7,cas4,cas1,cas2,cas9,csn2,csm6,csa3	NA,NA	NA|411aa|up_9|NZ_LS483413.1_1857122_1858355_-	PRK07314, PRK07314, beta-ketoacyl-ACP synthase II	NA|245aa|up_8|NZ_LS483413.1_1858369_1859104_-	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|307aa|up_7|NZ_LS483413.1_1859115_1860036_-	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]	NA|324aa|up_6|NZ_LS483413.1_1860060_1861032_-	TIGR03151, enACPred_II, putative enoyl-[acyl-carrier-protein] reductase II	NA|75aa|up_5|NZ_LS483413.1_1861230_1861455_-	PRK00982, acpP, acyl carrier protein; Provisional	NA|325aa|up_4|NZ_LS483413.1_1861515_1862490_-	PRK09352, PRK09352, beta-ketoacyl-ACP synthase 3	NA|145aa|up_3|NZ_LS483413.1_1862490_1862925_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|264aa|up_2|NZ_LS483413.1_1863001_1863793_-	PRK07260, PRK07260, enoyl-CoA hydratase; Provisional	NA|379aa|up_1|NZ_LS483413.1_1864014_1865151_-	PRK14276, PRK14276, chaperone protein DnaJ; Provisional	NA|214aa|up_0|NZ_LS483413.1_1865384_1866026_-	cd03140, GATase1_PfpI_3, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus	NA|610aa|down_0|NZ_LS483413.1_1866293_1868123_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|181aa|down_1|NZ_LS483413.1_1868240_1868783_-	PRK14156, PRK14156, heat shock protein GrpE; Provisional	NA|345aa|down_2|NZ_LS483413.1_1868824_1869859_-	PRK00082, hrcA, heat-inducible transcription repressor; Provisional	NA|190aa|down_3|NZ_LS483413.1_1869993_1870563_-	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion]	NA|248aa|down_4|NZ_LS483413.1_1870559_1871303_-	COG1876, VanY, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane]	NA|236aa|down_5|NZ_LS483413.1_1871292_1872000_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|79aa|down_6|NZ_LS483413.1_1872306_1872543_-	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|314aa|down_7|NZ_LS483413.1_1872613_1873555_-	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|480aa|down_8|NZ_LS483413.1_1873778_1875218_-	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA|489aa|down_9|NZ_LS483413.1_1875217_1876684_-	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA
