assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900475845.1_46758_E01	NZ_LS483424	Bordetella parapertussis strain NCTC10520 chromosome 1	1	614862-614955	1	CRISPRCasFinder	no	DEDDh	DEDDh,cas3,DinG,csa3,RT	Unclear	GTGCCTGTCCCGGCGGGGACAGGCAC	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,DinG,csa3,RT	NA,NA	NA|91aa|up_9|NZ_LS483424.1_606496_606769_-	pfam04138, GtrA, GtrA-like protein	NA|368aa|up_8|NZ_LS483424.1_606724_607828_+	cd10807, YdjC_like_3, uncharacterized YdjC-like family proteins from bacteria	NA|152aa|up_7|NZ_LS483424.1_607824_608280_+	COG4125, COG4125, Predicted membrane protein [Function unknown]	NA|308aa|up_6|NZ_LS483424.1_608285_609209_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|220aa|up_5|NZ_LS483424.1_609298_609958_-	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism]	NA|305aa|up_4|NZ_LS483424.1_609954_610869_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|467aa|up_3|NZ_LS483424.1_611057_612458_+	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|115aa|up_2|NZ_LS483424.1_612557_612902_+	COG3453, COG3453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|157aa|up_1|NZ_LS483424.1_612990_613461_+	pfam00582, Usp, Universal stress protein family	NA|407aa|up_0|NZ_LS483424.1_613603_614824_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|706aa|down_0|NZ_LS483424.1_615185_617303_+	PRK00007, PRK00007, elongation factor G; Reviewed	NA|173aa|down_1|NZ_LS483424.1_617299_617818_-	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|252aa|down_2|NZ_LS483424.1_617928_618684_+	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]	NA|410aa|down_3|NZ_LS483424.1_618879_620109_+	pfam02515, CoA_transf_3, CoA-transferase family III	NA|262aa|down_4|NZ_LS483424.1_620105_620891_+	PRK09245, PRK09245, crotonase/enoyl-CoA hydratase family protein	NA|324aa|down_5|NZ_LS483424.1_620957_621929_+	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|306aa|down_6|NZ_LS483424.1_621939_622857_-	cd08414, PBP2_LTTR_aromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold	NA|391aa|down_7|NZ_LS483424.1_623042_624215_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|343aa|down_8|NZ_LS483424.1_624241_625270_+	pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-terminal domain	NA|398aa|down_9|NZ_LS483424.1_625335_626529_+	PRK06954, PRK06954, acetyl-CoA C-acetyltransferase
GCF_900475845.1_46758_E01	NZ_LS483424	Bordetella parapertussis strain NCTC10520 chromosome 1	2	825541-825625	2	CRISPRCasFinder	no		DEDDh,cas3,DinG,csa3,RT	Orphan	GGTGCCTGTCCCCGCGGGGACAG	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,DinG,csa3,RT	NA,NA	NA|248aa|up_9|NZ_LS483424.1_814494_815238_-	COG1802, GntR, Transcriptional regulators [Transcription]	NA|347aa|up_8|NZ_LS483424.1_815281_816322_-	cd13602, PBP2_TRAP_BpDctp6_7, Substrate-binding domain of a pyroglutamic acid binding DctP subfamily of the tripartite ATP-independent periplasmic transporters; contains the type 2 periplasmic binding protein fold	NA|701aa|up_7|NZ_LS483424.1_816492_818595_+	TIGR00786, TRAP_transporter_permease_protein_SiaT, TRAP transporter, DctM subunit	NA|465aa|up_6|NZ_LS483424.1_818591_819986_+	pfam03972, MmgE_PrpD, MmgE/PrpD family	NA|319aa|up_5|NZ_LS483424.1_820012_820969_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|164aa|up_4|NZ_LS483424.1_820987_821479_-	PRK14092, PRK14092, 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase	NA|452aa|up_3|NZ_LS483424.1_821475_822831_-	TIGR01942, pcnB, poly(A) polymerase	NA|233aa|up_2|NZ_LS483424.1_822831_823530_-	cd02612, HAD_PGPPase, phosphatidylglycerol-phosphate phosphatase, similar to Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C	NA|234aa|up_1|NZ_LS483424.1_823526_824228_-	PRK08903, PRK08903, DnaA regulatory inactivator Hda; Validated	NA|350aa|up_0|NZ_LS483424.1_824480_825530_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|314aa|down_0|NZ_LS483424.1_825635_826577_-	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed	NA|630aa|down_1|NZ_LS483424.1_826573_828463_-	PRK00095, mutL, DNA mismatch repair endonuclease MutL	NA|213aa|down_2|NZ_LS483424.1_828549_829188_+	PRK10847, PRK10847, DedA family protein	NA|462aa|down_3|NZ_LS483424.1_829330_830716_-	PRK10319, PRK10319, N-acetylmuramoyl-L-alanine amidase AmiA	NA|179aa|down_4|NZ_LS483424.1_830646_831183_-	COG0802, COG0802, Predicted ATPase or kinase [General function prediction only]	NA|464aa|down_5|NZ_LS483424.1_831334_832726_+	PRK00485, fumC, fumarate hydratase; Reviewed	NA|327aa|down_6|NZ_LS483424.1_832742_833723_-	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|328aa|down_7|NZ_LS483424.1_833858_834842_+	cd13577, PBP2_BugE_Glu, Glutamate transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold	NA|299aa|down_8|NZ_LS483424.1_834906_835803_-	cd08415, PBP2_LysR_opines_like, The C-terminal substrate-domain of LysR-type transcriptional regulators involved in the catabolism of opines and that of related regulators, contains the type 2 periplasmic binding fold	NA|585aa|down_9|NZ_LS483424.1_835909_837664_+	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism]
GCF_900475845.1_46758_E01	NZ_LS483424	Bordetella parapertussis strain NCTC10520 chromosome 1	3	978568-978649	3	CRISPRCasFinder	no		DEDDh,cas3,DinG,csa3,RT	Orphan	GGCGCCTGTCCCGGCGGGGACAG	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,DinG,csa3,RT	NA|81aa|up_4|NZ_LS483424.1_973983_974226_+,NA|125aa|down_1|NZ_LS483424.1_981833_982208_+	NA|140aa|up_9|NZ_LS483424.1_967252_967672_+	pfam01475, FUR, Ferric uptake regulator family	NA|407aa|up_8|NZ_LS483424.1_967808_969029_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|300aa|up_7|NZ_LS483424.1_970737_971637_-	PRK02155, ppnK, NAD kinase	NA|335aa|up_6|NZ_LS483424.1_971751_972756_+	PRK00082, hrcA, heat-inducible transcription repressor; Provisional	NA|363aa|up_5|NZ_LS483424.1_972813_973902_+	PRK00035, hemH, ferrochelatase; Reviewed	NA|81aa|up_4|NZ_LS483424.1_973983_974226_+	NA	NA|185aa|up_3|NZ_LS483424.1_974367_974922_+	PRK14139, PRK14139, heat shock protein GrpE; Provisional	NA|127aa|up_2|NZ_LS483424.1_974929_975310_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|642aa|up_1|NZ_LS483424.1_975400_977326_+	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|378aa|up_0|NZ_LS483424.1_977426_978560_+	PRK10767, PRK10767, chaperone protein DnaJ; Provisional	NA|917aa|down_0|NZ_LS483424.1_978750_981501_-	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|125aa|down_1|NZ_LS483424.1_981833_982208_+	NA	NA|185aa|down_2|NZ_LS483424.1_982245_982800_+	COG1247, COG1247, Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]	NA|391aa|down_3|NZ_LS483424.1_982803_983976_-	COG3825, COG3825, Uncharacterized protein conserved in bacteria [Function unknown]	NA|296aa|down_4|NZ_LS483424.1_983997_984885_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|118aa|down_5|NZ_LS483424.1_985045_985399_+	COG2863, COG2863, Cytochrome c553 [Energy production and conversion]	NA|121aa|down_6|NZ_LS483424.1_985411_985774_+	COG2863, COG2863, Cytochrome c553 [Energy production and conversion]	NA|142aa|down_7|NZ_LS483424.1_985824_986250_-	pfam08897, DUF1841, Domain of unknown function (DUF1841)	NA|419aa|down_8|NZ_LS483424.1_986452_987709_+	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed	NA|321aa|down_9|NZ_LS483424.1_987926_988889_+	cd03789, GT9_LPS_heptosyltransferase, lipopolysaccharide heptosyltransferase and similar proteins
GCF_900475845.1_46758_E01	NZ_LS483424	Bordetella parapertussis strain NCTC10520 chromosome 1	4	2547133-2547219	4	CRISPRCasFinder	no		DEDDh,cas3,DinG,csa3,RT	Orphan	CTGTCCCCGCGGGGACAGGCACACT	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,DinG,csa3,RT	NA,NA	NA|201aa|up_9|NZ_LS483424.1_2534976_2535579_+	smart01103, CRS1_YhbY, Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly	NA|317aa|up_8|NZ_LS483424.1_2535718_2536669_+	pfam13011, LZ_Tnp_IS481, leucine-zipper of insertion element IS481	NA|159aa|up_7|NZ_LS483424.1_2536970_2537447_-	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|546aa|up_6|NZ_LS483424.1_2538070_2539708_+	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|438aa|up_5|NZ_LS483424.1_2539738_2541052_-	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|440aa|up_4|NZ_LS483424.1_2541311_2542631_+	cd13518, PBP2_Fe3_thiamine_like, Substrate binding domain of iron and thiamine transporters-like, a member of the type 2 periplasmic binding fold superfamily	NA|570aa|up_3|NZ_LS483424.1_2542707_2544417_+	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|362aa|up_2|NZ_LS483424.1_2544413_2545499_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|300aa|up_1|NZ_LS483424.1_2545546_2546446_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|215aa|up_0|NZ_LS483424.1_2546456_2547101_+	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|255aa|down_0|NZ_LS483424.1_2547281_2548046_-	PRK07024, PRK07024, SDR family oxidoreductase	NA|407aa|down_1|NZ_LS483424.1_2548227_2549448_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|1077aa|down_2|NZ_LS483424.1_2549568_2552799_-	pfam03797, Autotransporter, Autotransporter beta-domain	NA|276aa|down_3|NZ_LS483424.1_2553080_2553908_-	cd01310, TatD_DNAse, TatD like proteins;  E	NA|232aa|down_4|NZ_LS483424.1_2553941_2554637_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|427aa|down_5|NZ_LS483424.1_2554629_2555910_-	TIGR02212, releasing_system_transmembrane_protein_lolC	NA|326aa|down_6|NZ_LS483424.1_2555919_2556897_+	COG4255, COG4255, Uncharacterized protein conserved in bacteria [Function unknown]	NA|567aa|down_7|NZ_LS483424.1_2556878_2558579_+	PRK11070, PRK11070, single-stranded-DNA-specific exonuclease RecJ	NA|368aa|down_8|NZ_LS483424.1_2558681_2559786_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|252aa|down_9|NZ_LS483424.1_2559815_2560571_+	PRK07023, PRK07023, SDR family oxidoreductase
GCF_900475845.1_46758_E01	NZ_LS483424	Bordetella parapertussis strain NCTC10520 chromosome 1	5	2848374-2848447	5	CRISPRCasFinder	no		DEDDh,cas3,DinG,csa3,RT	Orphan	GGCGCCTGTCCCGGCGGGGACAG	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,DinG,csa3,RT	NA|237aa|up_0|NZ_LS483424.1_2847509_2848220_-,NA	NA|221aa|up_9|NZ_LS483424.1_2838297_2838960_-	PRK14487, PRK14487, cbb3-type cytochrome c oxidase subunit II; Provisional	NA|496aa|up_8|NZ_LS483424.1_2838970_2840458_-	PRK14488, PRK14488, cbb3-type cytochrome c oxidase subunit I; Provisional	NA|48aa|up_7|NZ_LS483424.1_2840582_2840726_-	pfam03597, FixS, Cytochrome oxidase maturation protein cbb3-type	NA|425aa|up_6|NZ_LS483424.1_2841761_2843036_-	PRK05964, PRK05964, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional	NA|398aa|up_5|NZ_LS483424.1_2843139_2844333_+	TIGR00858, Putative_8-amino-7-oxononanoate_synthase, 8-amino-7-oxononanoate synthase	NA|218aa|up_4|NZ_LS483424.1_2844329_2844983_+	TIGR01738, Pimeloyl-_methyl_ester_esterase, pimelyl-[acyl-carrier protein] methyl ester esterase	NA|479aa|up_3|NZ_LS483424.1_2844979_2846416_+	pfam13500, AAA_26, AAA domain	NA|120aa|up_2|NZ_LS483424.1_2846403_2846763_+	pfam03788, LrgA, LrgA family	NA|248aa|up_1|NZ_LS483424.1_2846755_2847499_+	pfam04172, LrgB, LrgB-like family	NA|237aa|up_0|NZ_LS483424.1_2847509_2848220_-	NA	NA|441aa|down_0|NZ_LS483424.1_2848595_2849918_-	PRK15063, PRK15063, isocitrate lyase; Provisional	NA|274aa|down_1|NZ_LS483424.1_2850236_2851058_+	PRK11792, queF, 7-cyano-7-deazaguanine reductase; Provisional	NA|418aa|down_2|NZ_LS483424.1_2851064_2852318_-	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|191aa|down_3|NZ_LS483424.1_2852481_2853054_-	PRK10832, PRK10832, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA|610aa|down_4|NZ_LS483424.1_2853093_2854923_-	PRK00558, uvrC, excinuclease ABC subunit UvrC	NA|354aa|down_5|NZ_LS483424.1_2854885_2855947_-	PRK05337, PRK05337, beta-hexosaminidase; Provisional	NA|154aa|down_6|NZ_LS483424.1_2855985_2856447_-	PRK00070, acpS, 4'-phosphopantetheinyl transferase; Provisional	NA|249aa|down_7|NZ_LS483424.1_2856531_2857278_-	PRK05265, PRK05265, pyridoxine 5'-phosphate synthase; Provisional	NA|474aa|down_8|NZ_LS483424.1_2857274_2858696_-	PRK09837, PRK09837, Cu(I)/Ag(I) efflux RND transporter outer membrane protein	NA|415aa|down_9|NZ_LS483424.1_2861970_2863215_-	PRK15030, PRK15030, multidrug efflux RND transporter periplasmic adaptor subunit AcrA
GCF_900475845.1_46758_E01	NZ_LS483424	Bordetella parapertussis strain NCTC10520 chromosome 1	6	3160029-3160103	6	CRISPRCasFinder	no		DEDDh,cas3,DinG,csa3,RT	Orphan	TGCCTGTCCCCGCGGGGACAGGC	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,DinG,csa3,RT	NA,NA	NA|230aa|up_9|NZ_LS483424.1_3147031_3147721_-	PRK12700, flgH, flagellar basal body L-ring protein; Reviewed	NA|255aa|up_8|NZ_LS483424.1_3148549_3149314_-	PRK12640, flgF, flagellar basal body rod protein FlgF; Reviewed	NA|474aa|up_7|NZ_LS483424.1_3149352_3150774_-	PRK12637, flgE, flagellar hook protein FlgE; Provisional	NA|235aa|up_6|NZ_LS483424.1_3150839_3151544_-	PRK12633, flgD, flagellar basal body rod modification protein; Provisional	NA|140aa|up_5|NZ_LS483424.1_3151591_3152011_-	PRK05681, flgC, flagellar basal body rod protein FlgC; Reviewed	NA|136aa|up_4|NZ_LS483424.1_3152023_3152431_-	PRK05680, flgB, flagellar basal body rod protein FlgB; Reviewed	NA|237aa|up_3|NZ_LS483424.1_3152614_3153325_+	PRK07018, flgA, flagellar basal body P-ring formation protein FlgA	NA|97aa|up_2|NZ_LS483424.1_3153451_3153742_+	TIGR03824, FlgM_jcvi, flagellar biosynthesis anti-sigma factor FlgM	NA|161aa|up_1|NZ_LS483424.1_3153758_3154241_+	pfam05130, FlgN, FlgN protein	NA|385aa|up_0|NZ_LS483424.1_3158734_3159889_-	PRK05702, flhB, flagellar type III secretion system protein FlhB	NA|211aa|down_0|NZ_LS483424.1_3160115_3160748_-	PRK11166, PRK11166, chemotaxis regulator CheZ; Provisional	NA|130aa|down_1|NZ_LS483424.1_3160756_3161146_-	PRK10610, PRK10610, chemotaxis protein CheY	NA|351aa|down_2|NZ_LS483424.1_3161198_3162251_-	PRK00742, PRK00742, chemotaxis-specific protein-glutamate methyltransferase CheB	NA|287aa|down_3|NZ_LS483424.1_3162247_3163108_-	PRK10611, PRK10611, protein-glutamate O-methyltransferase CheR	NA|569aa|down_4|NZ_LS483424.1_3163116_3164823_-	PRK15048, PRK15048, methyl-accepting chemotaxis protein II; Provisional	NA|167aa|down_5|NZ_LS483424.1_3164896_3165397_-	PRK10612, PRK10612, chemotaxis protein CheW	NA|686aa|down_6|NZ_LS483424.1_3165411_3167469_-	PRK10547, PRK10547, chemotaxis protein CheA; Provisional	NA|127aa|down_7|NZ_LS483424.1_3167495_3167876_-	cd17562, REC_CheY4-like, phosphoacceptor receiver (REC) domain of chemotaxis response regulator CheY4 and similar CheY family proteins	NA|316aa|down_8|NZ_LS483424.1_3167890_3168838_-	PRK09041, motB, motility protein MotB	NA|292aa|down_9|NZ_LS483424.1_3168850_3169726_-	PRK09110, PRK09110, flagellar motor stator protein MotA
GCF_900475845.1_46758_E01	NZ_LS483424	Bordetella parapertussis strain NCTC10520 chromosome 1	7	3442859-3442986	7	CRISPRCasFinder	no		DEDDh,cas3,DinG,csa3,RT	Orphan	TCAGGCTCGGGTTCAGGCTCGGG	23	1	5	3442945-3442963|3442945-3442963|3442945-3442963|3442945-3442963|3442945-3442963	NZ_LS483424.1_3442969-3442987|NZ_LS483424.1_3442981-3442999|NZ_LS483424.1_2373133-2373115|NZ_LS483424.1_2683511-2683493|NZ_LS483424.1_2741068-2741086	NA	2	2	Orphan	DEDDh,cas3,DinG,csa3,RT	NA,NA|49aa|down_2|NZ_LS483424.1_3451063_3451210_-	NA|407aa|up_9|NZ_LS483424.1_3430115_3431336_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|1081aa|up_8|NZ_LS483424.1_3431397_3434640_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|385aa|up_7|NZ_LS483424.1_3434650_3435805_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|321aa|up_6|NZ_LS483424.1_3436031_3436994_+	PRK05269, PRK05269, transaldolase B; Provisional	NA|265aa|up_5|NZ_LS483424.1_3437035_3437830_-	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|270aa|up_4|NZ_LS483424.1_3437833_3438643_-	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|346aa|up_3|NZ_LS483424.1_3438635_3439673_-	cd13649, PBP2_Cae31940, Substrate binding domain of an uncharacterized protein similar to ABC-type transporter for thiamin biosynthetic pathway intermediates; a member of the type 2 periplasmic binding fold superfamily	NA|417aa|up_2|NZ_LS483424.1_3439778_3441029_-	pfam02515, CoA_transf_3, CoA-transferase family III	NA|203aa|up_1|NZ_LS483424.1_3441103_3441712_-	PRK00076, recR, recombination protein RecR; Reviewed	NA|109aa|up_0|NZ_LS483424.1_3441761_3442088_-	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein	NA|1135aa|down_0|NZ_LS483424.1_3444964_3448369_-	COG1074, RecB, ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]	NA|887aa|down_1|NZ_LS483424.1_3448381_3451042_-	TIGR03623, TIGR03623, probable DNA repair protein	NA|49aa|down_2|NZ_LS483424.1_3451063_3451210_-	NA	NA|401aa|down_3|NZ_LS483424.1_3451245_3452448_-	cd17355, MFS_YcxA_like, MFS-type transporter YcxA and similar proteins of the Major Facilitator Superfamily of transporters	NA|371aa|down_4|NZ_LS483424.1_3453182_3454295_+	PRK11669, pbpG, D-alanyl-D-alanine endopeptidase; Provisional	NA|123aa|down_5|NZ_LS483424.1_3454301_3454670_-	COG4321, COG4321, Uncharacterized protein related to arylsulfate sulfotransferase involved in siderophore biosynthesis [General function prediction only]	NA|193aa|down_6|NZ_LS483424.1_3454764_3455343_-	cd03169, GATase1_PfpI_1, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus	NA|163aa|down_7|NZ_LS483424.1_3455462_3455951_-	cd00002, YbaK_deacylase, This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins	NA|311aa|down_8|NZ_LS483424.1_3455964_3456897_-	PRK00283, xerD, tyrosine recombinase	NA|255aa|down_9|NZ_LS483424.1_3456934_3457699_-	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional
GCF_900475845.1_46758_E01	NZ_LS483424	Bordetella parapertussis strain NCTC10520 chromosome 1	8	3693563-3693649	8	CRISPRCasFinder	no	csa3	DEDDh,cas3,DinG,csa3,RT	Type I-A	GTCCCCGCGGGGACAGGCACCACG	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,DinG,csa3,RT	NA|72aa|up_3|NZ_LS483424.1_3689040_3689256_+,NA	NA|379aa|up_9|NZ_LS483424.1_3681974_3683111_+	pfam02515, CoA_transf_3, CoA-transferase family III	NA|322aa|up_8|NZ_LS483424.1_3683154_3684120_+	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|427aa|up_7|NZ_LS483424.1_3684160_3685441_-	PRK15445, PRK15445, arsenical efflux pump membrane protein ArsB	csa3|109aa|up_6|NZ_LS483424.1_3685437_3685764_-	COG0640, ArsR, Predicted transcriptional regulators [Transcription]	NA|431aa|up_5|NZ_LS483424.1_3685916_3687209_+	TIGR03862, flavo_PP4765, uncharacterized flavoprotein, PP_4765 family	NA|490aa|up_4|NZ_LS483424.1_3687560_3689030_+	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family	NA|72aa|up_3|NZ_LS483424.1_3689040_3689256_+	NA	NA|725aa|up_2|NZ_LS483424.1_3689233_3691408_+	TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family	NA|481aa|up_1|NZ_LS483424.1_3691410_3692853_+	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|222aa|up_0|NZ_LS483424.1_3692874_3693540_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|2216aa|down_0|NZ_LS483424.1_3693774_3700422_+	NF012211, tand_rpt_95, tandem-95 repeat protein	NA|228aa|down_1|NZ_LS483424.1_3700502_3701186_+	COG3672, COG3672, Predicted transglutaminase-like cysteine proteinase [General    function prediction only]	NA|659aa|down_2|NZ_LS483424.1_3701201_3703178_+	pfam16448, LapD_MoxY_N, LapD/MoxY periplasmic domain	NA|209aa|down_3|NZ_LS483424.1_3703226_3703853_-	cd01012, YcaC_related, YcaC related amidohydrolases; E	NA|231aa|down_4|NZ_LS483424.1_3705307_3706000_-	PRK10119, PRK10119, putative hydrolase; Provisional	NA|832aa|down_5|NZ_LS483424.1_3706048_3708544_-	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B	NA|123aa|down_6|NZ_LS483424.1_3708643_3709012_-	COG3450, COG3450, Predicted enzyme of the cupin superfamily [General function prediction only]	NA|309aa|down_7|NZ_LS483424.1_3709298_3710225_+	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|145aa|down_8|NZ_LS483424.1_3711283_3711718_+	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria	NA|263aa|down_9|NZ_LS483424.1_3712840_3713629_+	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters
GCF_900475845.1_46758_E01	NZ_LS483424	Bordetella parapertussis strain NCTC10520 chromosome 1	9	4747918-4748054	1	PILER-CR	no		DEDDh,cas3,DinG,csa3,RT	Orphan	ATGTTTCACGTGAAACAA	18	0	0	NA	NA	NA	2	2	Orphan	DEDDh,cas3,DinG,csa3,RT	NA,NA	NA|144aa|up_9|NZ_LS483424.1_4738159_4738591_-	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|178aa|up_8|NZ_LS483424.1_4738654_4739188_-	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|127aa|up_7|NZ_LS483424.1_4739197_4739578_-	PRK05740, secE, preprotein translocase subunit SecE; Reviewed	NA|397aa|up_6|NZ_LS483424.1_4739816_4741007_-	PRK00049, PRK00049, elongation factor Tu; Reviewed	NA|334aa|up_5|NZ_LS483424.1_4741602_4742604_-	cd08964, L-asparaginase_II, Type II (periplasmic) bacterial L-asparaginase	NA|306aa|up_4|NZ_LS483424.1_4742596_4743514_-	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein	NA|269aa|up_3|NZ_LS483424.1_4743557_4744364_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|266aa|up_2|NZ_LS483424.1_4744370_4745168_-	pfam13614, AAA_31, AAA domain	NA|231aa|up_1|NZ_LS483424.1_4745164_4745857_-	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA|640aa|up_0|NZ_LS483424.1_4745853_4747773_-	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|69aa|down_0|NZ_LS483424.1_4749564_4749771_-	COG1278, CspC, Cold shock proteins [Transcription]	NA|389aa|down_1|NZ_LS483424.1_4750170_4751337_+	PRK09082, PRK09082, methionine aminotransferase; Validated	NA|508aa|down_2|NZ_LS483424.1_4751412_4752936_-	COG3333, COG3333, Uncharacterized protein conserved in bacteria [Function unknown]	NA|146aa|down_3|NZ_LS483424.1_4752932_4753370_-	pfam07331, TctB, Tripartite tricarboxylate transporter TctB family	NA|335aa|down_4|NZ_LS483424.1_4753474_4754479_-	COG3181, COG3181, Uncharacterized protein conserved in bacteria [Function unknown]	NA|472aa|down_5|NZ_LS483424.1_4754599_4756015_-	PRK10337, PRK10337, sensor protein QseC; Provisional	NA|227aa|down_6|NZ_LS483424.1_4756049_4756730_-	PRK15479, PRK15479, transcriptional regulator TctD	NA|425aa|down_7|NZ_LS483424.1_4757287_4758562_+	cd17355, MFS_YcxA_like, MFS-type transporter YcxA and similar proteins of the Major Facilitator Superfamily of transporters	NA|451aa|down_8|NZ_LS483424.1_4758506_4759859_-	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA|529aa|down_9|NZ_LS483424.1_4759975_4761562_+	cd08498, PBP2_NikA_DppA_OppA_like_2, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold
