The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LS483448	Streptococcus pneumoniae strain 4041STDY6836167 chromosome 1	2131442	8414	98500	2131442	protease,terminase,integrase,transposase,holin,tRNA,bacteriocin,tail,portal,capsid,head	Streptococcus_phage(75.0%)	97	NA	NA
WP_000158204.1|8414_9275_-	primase C-terminal domain-containing protein	NA	A0A1X9I6L2	Streptococcus_phage	74.5	6.5e-123
WP_000492143.1|9414_9690_-	hypothetical protein	NA	A0A1X9I5U9	Streptococcus_phage	56.8	5.6e-20
WP_000058847.1|9682_10024_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000122653.1|10004_10298_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001003747.1|10294_10510_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000171245.1|10511_10712_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033606667.1|10708_11161_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000424667.1|11612_12239_-	Rha family transcriptional regulator	NA	R9QNB1	Lactococcus_phage	40.8	6.1e-30
WP_000438800.1|12328_12562_-	helix-turn-helix transcriptional regulator	NA	X2KUC2	Streptococcus_phage	43.9	6.4e-09
WP_001107586.1|12718_13675_+	helix-turn-helix transcriptional regulator	NA	A0A060QNS7	Streptococcus_phage	41.0	5.5e-14
WP_000131181.1|13823_14828_+	hypothetical protein	NA	A0A0S2SXZ1	Bacillus_phage	29.1	1.2e-11
WP_000357940.1|14827_15280_+	type II toxin-antitoxin system death-on-curing family toxin	NA	NA	NA	NA	NA
WP_000704684.1|15375_16542_+|integrase	site-specific integrase	integrase	A0A1X9I5Y5	Streptococcus_phage	51.5	5.9e-103
WP_001218707.1|16661_17777_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_000163932.1|17847_18417_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_061365753.1|18417_21927_+	transcription-repair coupling factor	NA	NA	NA	NA	NA
WP_001234978.1|21994_22261_+	RNA-binding S4 domain-containing protein	NA	NA	NA	NA	NA
WP_000041909.1|22253_22622_+	septum formation initiator family protein	NA	NA	NA	NA	NA
WP_001224760.1|22741_24010_+	serine hydrolase	NA	NA	NA	NA	NA
WP_001208988.1|24006_25284_+|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	A7K9Y8	Acanthocystis_turfacea_chlorella_virus	24.1	2.5e-06
WP_000892185.1|25287_25830_+	hypoxanthine phosphoribosyltransferase	NA	A0A218MMB5	uncultured_virus	28.9	4.7e-10
WP_000744558.1|25845_27804_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	H8ZJI5	Ostreococcus_tauri_virus	45.8	3.2e-109
WP_000588911.1|27925_28405_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_000939545.1|32456_32693_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000205044.1|32923_34210_+	adenylosuccinate synthase	NA	L7Y4J5	Megavirus	37.1	2.7e-72
WP_000876726.1|34451_35600_-|integrase	site-specific integrase	integrase	A0A1S5S8M0	Streptococcus_phage	100.0	1.6e-217
WP_001174228.1|35773_36586_-	restriction endonuclease	NA	A0A1S5S9Q0	Streptococcus_phage	100.0	1.9e-148
WP_000136461.1|36623_37007_-	hypothetical protein	NA	A0A1S5S9I4	Streptococcus_phage	100.0	3.2e-66
WP_050200267.1|37019_37385_-	helix-turn-helix transcriptional regulator	NA	A0A1S5SEP7	Streptococcus_phage	99.2	1.2e-62
WP_172448391.1|37670_37817_+	hypothetical protein	NA	A0A141E188	Streptococcus_phage	95.8	1.0e-17
WP_050200268.1|37809_38013_+	helix-turn-helix transcriptional regulator	NA	A0A141E187	Streptococcus_phage	97.0	3.5e-27
WP_069681343.1|38155_38866_+	ORF6C domain-containing protein	NA	A0A1S5SFI2	Streptococcus_phage	98.3	2.4e-131
WP_000370959.1|38879_39137_+	hypothetical protein	NA	A0A1S5SEV6	Streptococcus_phage	100.0	1.2e-43
WP_050279349.1|39222_39543_+	hypothetical protein	NA	A0A1S5SCK7	Streptococcus_phage	99.1	3.7e-47
WP_050254356.1|39558_39849_+	hypothetical protein	NA	A0A1S5S951	Streptococcus_phage	99.0	2.6e-36
WP_061742662.1|39867_40692_+	phage replisome organizer N-terminal domain-containing protein	NA	A0A1S5SFJ6	Streptococcus_phage	99.6	7.0e-143
WP_000470303.1|41212_41407_+	hypothetical protein	NA	A0A1S5SCY7	Streptococcus_phage	100.0	1.8e-28
WP_000891969.1|41406_41634_+	hypothetical protein	NA	A0A1S5SCL8	Streptococcus_phage	100.0	2.3e-40
WP_000233201.1|41760_41925_+	hypothetical protein	NA	A0A141E182	Streptococcus_phage	100.0	1.4e-23
WP_001105098.1|41914_42124_+	hypothetical protein	NA	A0A1S5SCS9	Streptococcus_phage	100.0	1.5e-28
WP_000969662.1|42095_42413_+	hypothetical protein	NA	A0A1S5SGC8	Streptococcus_phage	100.0	2.0e-58
WP_050308165.1|42414_42918_+	DUF1642 domain-containing protein	NA	A0A141E180	Streptococcus_phage	96.4	3.5e-92
WP_111703758.1|42917_43205_+	hypothetical protein	NA	A0A141E0P3	Streptococcus_phage	98.9	2.3e-48
WP_001277861.1|43204_43393_+	hypothetical protein	NA	A0A1S5S928	Streptococcus_phage	100.0	5.5e-27
WP_000736391.1|43660_44062_+	transcriptional activator	NA	A0A1S5S8P9	Streptococcus_phage	100.0	6.2e-68
WP_000397552.1|44250_44793_+|integrase	site-specific integrase	integrase	A0A1S5S8G1	Streptococcus_phage	100.0	1.4e-99
WP_000282427.1|45103_45424_+	HNH endonuclease	NA	A0A141E0N9	Streptococcus_phage	100.0	2.7e-58
WP_069288229.1|45560_45953_+|terminase	P27 family phage terminase small subunit	terminase	A0A1S5S8F2	Streptococcus_phage	99.2	4.0e-64
WP_000527305.1|45945_47676_+|terminase	terminase large subunit	terminase	A0A141E0N7	Streptococcus_phage	100.0	0.0e+00
WP_001002923.1|47683_47902_+	hypothetical protein	NA	A0A1S5SEK2	Streptococcus_phage	100.0	1.3e-32
WP_000510807.1|47919_49122_+|portal	phage portal protein	portal	A0A1S5S8H6	Streptococcus_phage	100.0	8.8e-227
WP_001172113.1|49105_49681_+|head,protease	HK97 family phage prohead protease	head,protease	A0A1S5S8L3	Streptococcus_phage	100.0	2.6e-104
WP_001037662.1|49677_50850_+|capsid	phage major capsid protein	capsid	A0A1S5S9C0	Streptococcus_phage	100.0	2.1e-180
WP_000120767.1|50861_51152_+	hypothetical protein	NA	A0A1S5S8Q9	Streptococcus_phage	100.0	7.7e-36
WP_000371962.1|51154_51436_+|head,tail	phage head-tail connector protein	head,tail	A0A1S5S8H0	Streptococcus_phage	100.0	1.8e-45
WP_000267061.1|51422_51722_+|head	phage head closure protein	head	A0A1S5S8I2	Streptococcus_phage	100.0	3.7e-49
WP_000060159.1|51718_52078_+	HK97 gp10 family phage protein	NA	A0A1S5SFC4	Streptococcus_phage	100.0	4.2e-60
WP_000777003.1|52074_52398_+	hypothetical protein	NA	A0A1S5SEP5	Streptococcus_phage	100.0	3.5e-53
WP_000191277.1|52409_52988_+|tail	phage tail protein	tail	A0A1S5S9C1	Streptococcus_phage	100.0	2.6e-107
WP_024478843.1|52999_53419_+	hypothetical protein	NA	A0A1S5S9L8	Streptococcus_phage	99.3	1.9e-72
WP_069288230.1|53696_56456_+|tail	phage tail tape measure protein	tail	A0A1S5SFG3	Streptococcus_phage	97.9	0.0e+00
WP_061750696.1|56452_57175_+	hypothetical protein	NA	A0A1S5SEY1	Streptococcus_phage	99.6	5.2e-134
WP_111703759.1|57175_64408_+|tail	tail fiber domain-containing protein	tail	A0A1S5S9T9	Streptococcus_phage	81.4	0.0e+00
WP_001091126.1|64501_64705_+	hypothetical protein	NA	A0A1S5SAK7	Streptococcus_phage	100.0	8.6e-26
WP_050198156.1|64707_65058_+	hypothetical protein	NA	E8ZD23	Streptococcus_phage	99.1	2.3e-63
WP_001165339.1|65066_65483_+|holin	phage holin family protein	holin	A0A1S5SGH2	Streptococcus_phage	100.0	8.4e-68
WP_001186206.1|65486_65819_+|holin	phage holin	holin	A0A1S5S9U3	Streptococcus_phage	100.0	1.9e-51
WP_111703760.1|65822_66779_+	N-acetylmuramoyl-L-alanine amidase LytA	NA	A0A1S5SEN2	Streptococcus_phage	99.4	1.9e-144
WP_001209433.1|67048_67228_-	hypothetical protein	NA	Q3BLW4	Phage_SK137	96.6	3.5e-23
WP_001030863.1|67369_67519_-	hypothetical protein	NA	C5J952	Streptococcus_phage	95.9	9.1e-17
WP_000291870.1|67799_68267_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_000701992.1|68453_68897_+	dUTP diphosphatase	NA	Q2WG49	Clostridium_botulinum_D_phage	47.3	2.1e-29
WP_000691236.1|68898_69414_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_078139281.1|69427_70789_+	DNA repair protein RadA	NA	NA	NA	NA	NA
WP_172448392.1|70861_71359_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_000749763.1|71383_72199_+|protease	PrsW family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000010163.1|72343_73312_+	ribose-phosphate diphosphokinase	NA	A0A1V0SHF7	Hokovirus	34.7	4.0e-44
WP_000483073.1|73853_74087_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000233180.1|74079_74196_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060544779.1|74410_74761_-|transposase	PD-(D/E)XK nuclease family transposase	transposase	NA	NA	NA	NA
WP_001812977.1|75016_77650_+	DNA polymerase I	NA	A0A218MKQ4	uncultured_virus	30.1	1.3e-57
WP_111703762.1|77689_78946_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	94.0	3.2e-227
WP_061816502.1|79044_80271_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	54.8	2.1e-119
WP_000076479.1|80480_80918_+	CoA-binding protein	NA	NA	NA	NA	NA
WP_000009158.1|81235_82246_-	YeiH family putative sulfate export transporter	NA	NA	NA	NA	NA
WP_000366345.1|82394_83564_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_000616167.1|83560_84331_+	DNA repair protein RecO	NA	NA	NA	NA	NA
WP_000717453.1|84327_85320_+	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
WP_000136447.1|85325_85559_+	acyl carrier protein	NA	A0A2I7RIC8	Vibrio_phage	40.6	3.3e-05
WP_001093487.1|86097_86328_+|bacteriocin	bacteriocin-like peptide BlpU	bacteriocin	NA	NA	NA	NA
WP_000668299.1|87044_89198_+	peptide cleavage/export ABC transporter	NA	W8CYL7	Bacillus_phage	28.2	4.2e-46
WP_000801603.1|89210_90560_+	HlyD family secretion protein	NA	NA	NA	NA	NA
WP_000043304.1|90729_91437_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A1D8KNF0	Synechococcus_phage	39.2	1.0e-41
WP_000361163.1|91638_95364_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	25.8	2.1e-37
WP_000220632.1|95456_96899_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	35.1	5.7e-55
WP_000182575.1|96935_97958_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A1D7SE90	Cyanophage	43.9	1.2e-64
WP_000717506.1|97954_98500_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.0	7.4e-24
>prophage 2
NZ_LS483448	Streptococcus pneumoniae strain 4041STDY6836167 chromosome 1	2131442	150084	183244	2131442	tRNA,bacteriocin,transposase	Streptococcus_phage(50.0%)	30	NA	NA
WP_001230165.1|150084_150372_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_000724257.1|150423_152532_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_000571329.1|152528_153170_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.3	3.3e-23
WP_001038474.1|153376_154183_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_001810177.1|154199_155396_+	argininosuccinate synthase	NA	NA	NA	NA	NA
WP_001268171.1|156532_157396_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_111703826.1|157861_160081_+	peptidase domain-containing ABC transporter	NA	W8CYL7	Bacillus_phage	24.9	2.6e-38
WP_001096141.1|160073_160541_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000781019.1|160537_161890_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_000420335.1|162037_162343_+|bacteriocin	SPAR17_0115 family bacteriocin-like peptide	bacteriocin	NA	NA	NA	NA
WP_000424408.1|162676_163030_+	hypothetical protein	NA	NA	NA	NA	NA
WP_172448393.1|163026_163755_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000989850.1|163908_164121_+	hypothetical protein	NA	NA	NA	NA	NA
WP_069288336.1|165001_166060_+	hypothetical protein	NA	NA	NA	NA	NA
WP_050079725.1|166374_167352_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000424407.1|167728_168103_+|bacteriocin	SPH_0224 family bacteriocin-like peptide	bacteriocin	NA	NA	NA	NA
WP_000619778.1|168311_169214_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061746999.1|169269_169602_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001066697.1|169598_170327_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000770312.1|171457_171697_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001810010.1|171681_171960_+	hypothetical protein	NA	M1Q0Z8	Streptococcus_phage	50.5	1.1e-20
WP_111703766.1|172245_174564_+	pneumococcal surface protein A	NA	NA	NA	NA	NA
WP_001282984.1|174964_176086_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_000193628.1|176226_176682_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_000220953.1|176691_178605_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_000530081.1|178895_180152_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	97.1	4.5e-234
WP_000331999.1|180361_182041_-	ribonuclease J	NA	NA	NA	NA	NA
WP_000639577.1|182042_182276_-	DNA-dependent RNA polymerase auxiliary subunit epsilon family protein	NA	NA	NA	NA	NA
WP_000184676.1|182657_182879_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000974043.1|183091_183244_-|bacteriocin	fratricide two-peptide bacteriocin subunit CibB	bacteriocin	NA	NA	NA	NA
>prophage 3
NZ_LS483448	Streptococcus pneumoniae strain 4041STDY6836167 chromosome 1	2131442	486417	536642	2131442	tRNA,bacteriocin	Klosneuvirus(27.27%)	50	NA	NA
WP_000181374.1|486417_486921_+|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
WP_000185827.1|487373_487937_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_000678691.1|487950_488577_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_000867289.1|488603_488993_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000418402.1|489573_490161_+	DNA-directed RNA polymerase subunit delta	NA	NA	NA	NA	NA
WP_000105239.1|490550_492158_+	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	47.0	2.0e-141
WP_000026619.1|492716_494348_-	Na/Pi cotransporter family protein	NA	NA	NA	NA	NA
WP_000795158.1|494640_499620_+	bacterial Ig-like domain-containing protein	NA	NA	NA	NA	NA
WP_001096750.1|499709_500906_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_000119900.1|501041_501569_+	aromatic acid exporter family protein	NA	NA	NA	NA	NA
WP_000659547.1|501645_502002_+	transcriptional repressor GlnR	NA	NA	NA	NA	NA
WP_001122900.1|502038_503385_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_001808898.1|503474_503594_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000410533.1|503558_503708_+	hypothetical protein	NA	NA	NA	NA	NA
WP_057525492.1|504159_505440_+	restriction endonuclease subunit S	NA	A0A1V0SLK8	Klosneuvirus	25.6	1.1e-12
WP_001104691.1|505387_505933_-	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_111703772.1|505942_506842_+	SAM-dependent DNA methyltransferase	NA	NA	NA	NA	NA
WP_050310379.1|506841_508392_+	restriction endonuclease subunit S	NA	A0A1V0SLK8	Klosneuvirus	25.6	1.3e-12
WP_001813510.1|508339_508945_-	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_000651177.1|508955_509753_-	tyrosine-type DNA invertase PsrA	NA	A0A0H4TI16	Erysipelothrix_phage	28.7	1.3e-21
WP_078142062.1|509809_511360_-	restriction endonuclease subunit S	NA	A0A1V0SKS6	Klosneuvirus	29.2	8.4e-12
WP_000029046.1|511359_512823_-	SAM-dependent DNA methyltransferase	NA	NA	NA	NA	NA
WP_000229097.1|512835_515169_-	DEAD/DEAH box helicase family protein	NA	A0A097BY72	Enterococcus_phage	26.5	2.0e-25
WP_001088694.1|515773_516283_+	DUF2812 domain-containing protein	NA	NA	NA	NA	NA
WP_000255770.1|516446_517481_+	heat-inducible transcriptional repressor HrcA	NA	NA	NA	NA	NA
WP_000046031.1|517507_518032_+	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_000034673.1|518520_520344_+	molecular chaperone DnaK	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	47.2	1.0e-133
WP_000114433.1|520345_520702_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001810236.1|521103_522240_+	molecular chaperone DnaJ	NA	E3T4P7	Cafeteria_roenbergensis_virus	31.3	3.1e-24
WP_001810235.1|522573_522813_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000777760.1|522974_523262_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001278299.1|523271_523682_-	HIT family protein	NA	B5LJ12	Mycobacterium_phage	31.6	3.4e-05
WP_000889925.1|523749_524481_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.6	5.3e-25
WP_111703773.1|524477_525527_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000132572.1|525694_526024_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000682135.1|526300_526639_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_088794864.1|526643_527381_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001017638.1|527394_528735_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_000358817.1|528776_528932_-	quorum-sensing system pheromone BlpC	NA	NA	NA	NA	NA
WP_001069091.1|528988_530350_-|bacteriocin	bacteriocin secretion accessory protein	bacteriocin	NA	NA	NA	NA
WP_078133841.1|530360_532004_-	peptide cleavage/export ABC transporter	NA	W8CYL7	Bacillus_phage	27.4	6.3e-42
WP_001810228.1|531930_532518_-	peptidase C39	NA	NA	NA	NA	NA
WP_001093259.1|532799_532997_+|bacteriocin	bacteriocin-like peptide BlpI	bacteriocin	NA	NA	NA	NA
WP_001093248.1|533463_533733_+|bacteriocin	bacteriocin-like peptide BlpJ	bacteriocin	NA	NA	NA	NA
WP_000379964.1|533801_534032_+|bacteriocin	bacteriocin-like peptide BlpU	bacteriocin	NA	NA	NA	NA
WP_000346298.1|534034_534154_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000727118.1|534450_534615_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000846944.1|534611_535016_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000379879.1|536168_536423_+|bacteriocin	two-peptide bacteriocin subunit BlpM	bacteriocin	NA	NA	NA	NA
WP_001099492.1|536438_536642_+|bacteriocin	two-peptide bacteriocin subunit BlpN	bacteriocin	NA	NA	NA	NA
>prophage 4
NZ_LS483448	Streptococcus pneumoniae strain 4041STDY6836167 chromosome 1	2131442	832478	891716	2131442	protease,integrase,transposase,holin,tRNA,bacteriocin	Streptococcus_phage(47.37%)	51	836088:836128	887334:887374
WP_001200062.1|832478_833693_+|tRNA	tRNA 4-thiouridine(8) synthase ThiI	tRNA	NA	NA	NA	NA
WP_001076703.1|833827_834652_+	esterase family protein	NA	NA	NA	NA	NA
WP_001108634.1|834664_835831_+	ATP-grasp domain-containing protein	NA	NA	NA	NA	NA
836088:836128	attL	TCAATGAAAATCAAAGAGCAAACTAGGAAGCTAGCCGCAGG	NA	NA	NA	NA
WP_000627748.1|836338_837832_+	SAM-dependent DNA methyltransferase	NA	A0A2H4UVB0	Bodo_saltans_virus	31.8	3.0e-27
WP_001826876.1|837844_838387_+	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_000756131.1|838383_839502_+	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_000260605.1|839561_839798_+	AbrB family transcriptional regulator	NA	NA	NA	NA	NA
WP_000158366.1|839794_840208_+	type II toxin-antitoxin system death-on-curing family toxin	NA	NA	NA	NA	NA
WP_000444456.1|840325_841291_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2H4JAA2	uncultured_Caudovirales_phage	29.6	1.8e-33
WP_088805343.1|841326_842370_+	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_000526341.1|842399_845750_+	DEAD/DEAH box helicase family protein	NA	A0A2H4P9W3	Gordonia_phage	24.8	2.4e-11
WP_001042995.1|846255_846726_-	arginine repressor	NA	NA	NA	NA	NA
WP_001212037.1|846742_849016_-	Xaa-Pro dipeptidyl-peptidase	NA	NA	NA	NA	NA
WP_000561538.1|849362_852464_+	DNA polymerase III subunit alpha	NA	A0A291AWR1	Streptomyces_phage	32.8	8.9e-114
WP_000820852.1|852545_853553_+	6-phosphofructokinase	NA	NA	NA	NA	NA
WP_001042809.1|853611_855117_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_001167984.1|855391_855640_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1S5S8R9	Streptococcus_phage	52.1	1.7e-12
WP_000749605.1|856879_857752_+	DUF4300 family protein	NA	NA	NA	NA	NA
WP_000420566.1|858384_858696_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000759775.1|858699_859416_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_000617843.1|859545_860361_-	TIGR03943 family protein	NA	NA	NA	NA	NA
WP_000123614.1|860357_861263_-	permease	NA	NA	NA	NA	NA
WP_000359149.1|861719_863849_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_000778587.1|863835_864285_+	SprT family protein	NA	NA	NA	NA	NA
WP_001085044.1|864343_864616_+	PspC domain-containing protein	NA	NA	NA	NA	NA
WP_000680767.1|864969_865161_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000173358.1|865588_866347_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.3	7.7e-27
WP_000489386.1|866348_868337_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_172448395.1|869047_870091_-|transposase	IS30 family transposase	transposase	H7BVY4	unidentified_phage	35.3	5.2e-34
WP_068810930.1|870705_872166_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_000366713.1|872166_873027_+	polyamine aminopropyltransferase	NA	NA	NA	NA	NA
WP_000088783.1|873023_874283_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_000764369.1|874282_875410_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_000969445.1|875406_876492_+	agmatine deiminase	NA	M1HES8	Acanthocystis_turfacea_Chlorella_virus	47.5	1.6e-89
WP_001246753.1|876501_877377_+	N-carbamoylputrescine amidase	NA	M1H5W0	Paramecium_bursaria_Chlorella_virus	50.0	1.9e-77
WP_000593568.1|877557_878367_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_000602449.1|878638_878860_+|bacteriocin	SP_0924 family bacteriocin-like peptide	bacteriocin	NA	NA	NA	NA
WP_000745380.1|878913_879585_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001025709.1|879826_880735_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	27.7	3.1e-06
WP_000745389.1|880731_881193_+	signal peptidase II	NA	NA	NA	NA	NA
WP_000403193.1|881182_882070_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000728291.1|882072_883956_+|holin	phosphorylcholine esterase CbpE	holin	Q332B9	Clostridium_botulinum_C_phage	22.9	9.5e-10
WP_075218898.1|884035_885166_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	58.4	1.1e-114
WP_000254687.1|885175_886438_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	64.8	5.0e-140
WP_000689700.1|886441_887239_+	pyrroline-5-carboxylate reductase	NA	A0A1X9I6T5	Streptococcus_phage	50.9	1.1e-60
WP_000033389.1|887460_888099_+	dTMP kinase	NA	M1PSC7	Streptococcus_phage	68.1	1.7e-75
887334:887374	attR	CCTGCGGCTAGCTTCCTAGTTTGCTCTTTGATTTTCATTGA	NA	NA	NA	NA
WP_000806716.1|888095_888986_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	51.4	1.4e-72
WP_000358228.1|889025_889343_+	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	60.0	2.9e-28
WP_001166872.1|889345_890215_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	75.7	3.8e-115
WP_001261452.1|890441_890960_+	ClbS/DfsB family four-helix bundle protein	NA	NA	NA	NA	NA
WP_000345254.1|891068_891716_+	replication initiator protein A	NA	A0A2P0VK56	Streptococcus_phage	33.7	7.0e-13
>prophage 5
NZ_LS483448	Streptococcus pneumoniae strain 4041STDY6836167 chromosome 1	2131442	1135413	1198070	2131442	protease,transposase,holin,tRNA,bacteriocin	Bacillus_phage(17.65%)	53	NA	NA
WP_000985093.1|1135413_1135716_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
WP_001013245.1|1135956_1136835_-|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
WP_001002628.1|1136844_1138119_-	DUF2130 domain-containing protein	NA	NA	NA	NA	NA
WP_000625729.1|1139622_1140420_-	formate/nitrite transporter family protein	NA	NA	NA	NA	NA
WP_000078848.1|1140663_1141407_-	sortase SrtA	NA	NA	NA	NA	NA
WP_001152990.1|1141406_1143875_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	35.5	3.5e-105
WP_000204727.1|1144068_1145055_+	L-lactate dehydrogenase	NA	NA	NA	NA	NA
WP_001809704.1|1146123_1146378_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_000208080.1|1146379_1146622_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000530078.1|1147688_1148945_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	96.7	6.6e-233
WP_001289493.1|1149008_1149818_-	MBL fold metallo-hydrolase	NA	A0A0C5AFC1	Paenibacillus_phage	39.0	1.8e-34
WP_000886213.1|1149819_1151169_-	cell wall metabolism sensor histidine kinase VicK	NA	W8CYF6	Bacillus_phage	34.0	3.0e-34
WP_000722076.1|1151161_1151866_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	39.8	2.8e-39
WP_000886152.1|1151921_1153097_-	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_000845285.1|1153424_1155095_-	formate--tetrahydrofolate ligase	NA	NA	NA	NA	NA
WP_000699494.1|1155324_1156014_+	phosphopantothenate--cysteine ligase	NA	NA	NA	NA	NA
WP_001284128.1|1156025_1156577_+	phosphopantothenoylcysteine decarboxylase	NA	A0A068EHP1	Penguinpox_virus	37.6	3.1e-25
WP_000747408.1|1156560_1157124_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_001097402.1|1157405_1157933_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_000159176.1|1157944_1158460_+	transcription repressor NadR	NA	NA	NA	NA	NA
WP_000091537.1|1158456_1158924_-	8-oxo-dGTP diphosphatase	NA	NA	NA	NA	NA
WP_000216006.1|1158996_1159485_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000639842.1|1159450_1160014_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000607033.1|1160023_1162012_-	excinuclease ABC subunit B	NA	NA	NA	NA	NA
WP_000792099.1|1162088_1163042_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000726260.1|1163214_1165380_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_001096339.1|1165379_1166120_+	amino acid ABC transporter ATP-binding protein	NA	W5SAS9	Pithovirus	27.5	4.9e-18
WP_000096162.1|1166268_1167756_+	glucose-6-phosphate dehydrogenase	NA	H6WFS4	Cyanophage	32.9	2.2e-70
WP_000522334.1|1167799_1169020_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_000763447.1|1169023_1169842_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_000153028.1|1169841_1170636_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_000280958.1|1170632_1174172_-	chromosome segregation protein SMC	NA	NA	NA	NA	NA
WP_000661498.1|1174162_1174861_-	ribonuclease III	NA	J2YAN1	Acanthamoeba_polyphaga_lentillevirus	33.8	3.9e-25
WP_000931179.1|1175178_1176165_-	GMP reductase	NA	G3MBI2	Bacillus_virus	72.2	1.4e-137
WP_001812963.1|1176339_1177656_-	McrC family protein	NA	NA	NA	NA	NA
WP_001042394.1|1177642_1179574_-	McrB family protein	NA	K4I1H4	Acidithiobacillus_phage	33.1	1.2e-15
WP_000929150.1|1180626_1180986_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000762430.1|1180989_1181259_-	DUF1294 domain-containing protein	NA	NA	NA	NA	NA
WP_001010957.1|1182303_1183398_-	2-isopropylmalate synthase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	37.5	9.1e-05
WP_000461585.1|1183416_1184073_-	MmcQ/YjbR family DNA-binding protein	NA	NA	NA	NA	NA
WP_000638796.1|1184116_1184749_-	copper homeostasis protein CutC	NA	NA	NA	NA	NA
WP_001237219.1|1184841_1185201_-	YbaN family protein	NA	NA	NA	NA	NA
WP_000179650.1|1185306_1187394_-	type I DNA topoisomerase	NA	A0A1V0SCS0	Indivirus	37.3	2.5e-104
WP_001812957.1|1187561_1188605_-	TIGR00341 family protein	NA	NA	NA	NA	NA
WP_000705306.1|1189489_1190338_-	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	39.5	4.2e-34
WP_000643963.1|1190433_1191123_-	NTP transferase domain-containing protein	NA	A0A127AW70	Bacillus_phage	45.0	3.4e-05
WP_000837618.1|1191134_1192013_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000411209.1|1192002_1192872_-|holin	choline kinase LicA	holin	NA	NA	NA	NA
WP_000609893.1|1192888_1193911_-	alcohol dehydrogenase catalytic domain-containing protein	NA	NA	NA	NA	NA
WP_000638500.1|1193915_1194623_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_000835898.1|1194958_1196446_+	type IV teichoic acid flippase TacF	NA	NA	NA	NA	NA
WP_000811991.1|1196455_1197259_+|holin	phosphorylcholine transferase LicD	holin	A0A1V0SD50	Indivirus	27.1	4.0e-10
WP_001199649.1|1197260_1198070_+|holin	phosphorylcholine transferase LicD	holin	A0A1V0SD50	Indivirus	30.3	9.1e-10
>prophage 6
NZ_LS483448	Streptococcus pneumoniae strain 4041STDY6836167 chromosome 1	2131442	1319338	1360626	2131442	tRNA,transposase,holin	Streptococcus_phage(23.08%)	44	NA	NA
WP_001818254.1|1319338_1319497_-|transposase	transposase domain-containing protein	transposase	NA	NA	NA	NA
WP_000245766.1|1319568_1320018_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_000691853.1|1320604_1320799_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_001812990.1|1320995_1321319_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_001136122.1|1321299_1321485_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000065723.1|1321788_1323351_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	32.8	1.4e-19
WP_000936187.1|1323492_1324191_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000071672.1|1324233_1325130_-	EamA family transporter	NA	NA	NA	NA	NA
WP_000872215.1|1325138_1326074_-	serine hydrolase	NA	NA	NA	NA	NA
WP_001102211.1|1326070_1326796_-	proteinase	NA	NA	NA	NA	NA
WP_000290657.1|1326879_1327515_-|holin	1-alkyl-2-acetylglycerophosphocholine esterase	holin	A0A2K9L661	Tupanvirus	28.7	8.7e-08
WP_000972931.1|1327516_1328344_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_001272961.1|1329954_1330566_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	42.4	4.9e-16
WP_000855753.1|1330610_1331339_+	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA	NA
WP_000272294.1|1331377_1332289_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	51.5	5.9e-90
WP_000926599.1|1332354_1332579_-	DUF4059 family protein	NA	NA	NA	NA	NA
WP_000590970.1|1332656_1333400_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.5	4.7e-29
WP_001103449.1|1333399_1334200_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_000889093.1|1334357_1334714_-	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	57.3	1.2e-33
WP_001170346.1|1334726_1335239_-	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	55.6	1.3e-46
WP_000405832.1|1335238_1335733_-	GNAT family N-acetyltransferase	NA	M1PSC3	Streptococcus_phage	52.1	1.9e-42
WP_000858730.1|1335867_1336314_+	DUF1836 domain-containing protein	NA	NA	NA	NA	NA
WP_001097993.1|1336310_1336958_+	hemolysin III family protein	NA	NA	NA	NA	NA
WP_000689945.1|1336978_1337560_-	pyridoxal 5'-phosphate synthase glutaminase subunit PdxT	NA	NA	NA	NA	NA
WP_000138517.1|1337560_1338436_-	pyridoxal 5'-phosphate synthase lyase subunit PdxS	NA	NA	NA	NA	NA
WP_000036789.1|1338587_1339967_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_000175407.1|1340260_1341184_+	FAD:protein FMN transferase	NA	NA	NA	NA	NA
WP_000915944.1|1341243_1341849_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL77	Lactobacillus_phage	54.2	5.9e-54
WP_000673678.1|1341866_1343111_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	52.7	3.8e-55
WP_000371287.1|1343206_1343464_-	DUF896 family protein	NA	NA	NA	NA	NA
WP_000164771.1|1343505_1345542_-|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_000038736.1|1345753_1346671_-|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_000369583.1|1347038_1347800_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001099675.1|1348072_1348915_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	40.2	1.7e-51
WP_001852192.1|1349028_1350420_-	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_001810003.1|1350654_1351032_-|transposase	PD-(D/E)XK nuclease family transposase	transposase	NA	NA	NA	NA
WP_000915890.1|1351282_1352260_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_000850564.1|1352256_1353339_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	31.0	4.4e-36
WP_001040724.1|1354575_1355772_-	elongation factor Tu	NA	A0A076FFS6	Aureococcus_anophage	29.6	7.3e-32
WP_000348122.1|1356693_1357563_-	aquaporin family protein	NA	NA	NA	NA	NA
WP_000248996.1|1357785_1358307_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
WP_001810000.1|1358278_1359370_-	MucBP domain-containing protein	NA	NA	NA	NA	NA
WP_000935663.1|1359480_1359735_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000200307.1|1360092_1360626_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_LS483448	Streptococcus pneumoniae strain 4041STDY6836167 chromosome 1	2131442	1424783	1470916	2131442	protease,terminase,integrase,holin,tail,portal	Streptococcus_phage(95.0%)	64	1425786:1425800	1466753:1466767
WP_000081003.1|1424783_1425752_+	NAD(P)/FAD-dependent oxidoreductase	NA	Q9JRK7	Streptococcus_phage	100.0	2.8e-66
1425786:1425800	attL	TTATAATTCATCCGC	NA	NA	NA	NA
WP_111703799.1|1426004_1426961_-	N-acetylmuramoyl-L-alanine amidase LytA	NA	A0A1S5SCT0	Streptococcus_phage	96.5	1.3e-156
WP_001186239.1|1426960_1427296_-|holin	phage holin	holin	A0A126GGL9	Streptococcus_phage	99.1	3.4e-51
WP_001810279.1|1427299_1427599_-	hypothetical protein	NA	A0A1S5SC89	Streptococcus_phage	100.0	1.4e-45
WP_000852249.1|1427608_1427959_-	hypothetical protein	NA	A0A060QMT7	Streptococcus_phage	100.0	4.7e-64
WP_001091112.1|1427961_1428165_-	hypothetical protein	NA	A0A1S5SCH7	Streptococcus_phage	100.0	3.8e-26
WP_000068023.1|1434706_1435057_-	hypothetical protein	NA	A0A141E0R8	Streptococcus_phage	99.1	9.8e-62
WP_111703800.1|1435065_1438716_-	hypothetical protein	NA	A0A141E0W8	Streptococcus_phage	98.2	0.0e+00
WP_000478007.1|1438702_1439053_-	hypothetical protein	NA	A0A060QN56	Streptococcus_phage	100.0	2.1e-56
WP_001185631.1|1439091_1439472_-	hypothetical protein	NA	A0A1S5SF40	Streptococcus_phage	100.0	9.3e-66
WP_000880665.1|1439476_1439890_-|tail	tail protein	tail	A0A1S5SF61	Streptococcus_phage	99.3	3.3e-72
WP_000608235.1|1439892_1440261_-	hypothetical protein	NA	A0A1S5SFB8	Streptococcus_phage	100.0	1.2e-65
WP_000015940.1|1440257_1440773_-	HK97 gp10 family phage protein	NA	A0A141E0I0	Streptococcus_phage	100.0	9.3e-93
WP_000478943.1|1440747_1441086_-	hypothetical protein	NA	A0A1S5SCH1	Streptococcus_phage	100.0	8.6e-47
WP_000021218.1|1441066_1441378_-	hypothetical protein	NA	A0A1S5S8S7	Streptococcus_phage	99.0	7.2e-48
WP_000669348.1|1441379_1441568_-	hypothetical protein	NA	A0A141DZN7	Streptococcus_phage	100.0	1.4e-27
WP_000863393.1|1441577_1442603_-	sugar-binding protein	NA	A0A1S5S8Q2	Streptococcus_phage	99.7	7.3e-190
WP_001288018.1|1442625_1443150_-	DUF4355 domain-containing protein	NA	E8ZDV2	Streptococcus_phage	98.9	1.7e-73
WP_000890164.1|1443376_1443628_-	hypothetical protein	NA	A0A1S5SB84	Streptococcus_phage	98.8	4.4e-40
WP_000877357.1|1443629_1443875_-	hypothetical protein	NA	A0A141E1X7	Streptococcus_phage	100.0	5.5e-43
WP_050168037.1|1443926_1444154_-	hypothetical protein	NA	A0A141E1T5	Streptococcus_phage	100.0	9.2e-37
WP_000285392.1|1445453_1446923_-|portal	phage portal protein	portal	A0A1S5SBD1	Streptococcus_phage	99.2	1.5e-276
WP_000084412.1|1446934_1448233_-|terminase	PBSX family phage terminase large subunit	terminase	A0A141E1F1	Streptococcus_phage	99.3	7.2e-259
WP_000863690.1|1448210_1448723_-|terminase	terminase small subunit	terminase	A0A060QNR7	Streptococcus_phage	99.4	1.5e-87
WP_050232888.1|1449078_1449540_-	DUF1492 domain-containing protein	NA	A0A1S5SBH7	Streptococcus_phage	99.3	5.2e-79
WP_061653516.1|1449614_1449929_-	hypothetical protein	NA	A0A060QNX1	Streptococcus_phage	99.0	5.2e-54
WP_001042650.1|1449949_1450129_-	hypothetical protein	NA	A0A1S5S7Z6	Streptococcus_phage	100.0	4.3e-29
WP_061816337.1|1450121_1450517_-	hypothetical protein	NA	A0A1S5SIM9	Streptococcus_phage	93.9	1.7e-70
WP_061653515.1|1450628_1451087_-	hypothetical protein	NA	X2KU19	Streptococcus_phage	98.7	8.0e-72
WP_000819330.1|1451086_1451347_-	DUF1372 family protein	NA	X2KUE2	Streptococcus_phage	100.0	4.9e-42
WP_111703802.1|1451504_1452185_-	DUF1642 domain-containing protein	NA	X2KSY2	Streptococcus_phage	83.1	2.3e-107
WP_172448396.1|1452181_1452337_-	hypothetical protein	NA	X2KPG3	Streptococcus_phage	94.1	1.2e-19
WP_000580029.1|1452630_1453974_-	hypothetical protein	NA	A0A1S5SAS5	Streptococcus_phage	99.3	7.7e-256
WP_000097191.1|1453976_1454798_-	bifunctional DNA primase/polymerase	NA	A0A1S5SDK7	Streptococcus_phage	99.3	6.5e-157
WP_111703803.1|1454970_1455471_-	hypothetical protein	NA	A0A126GGP3	Streptococcus_phage	98.2	2.1e-89
WP_000885998.1|1455490_1456267_-	AAA family ATPase	NA	A0A141DZQ7	Streptococcus_phage	100.0	8.7e-143
WP_001044592.1|1456266_1456584_-	hypothetical protein	NA	X2KPG0	Streptococcus_phage	100.0	2.0e-53
WP_000028860.1|1456602_1457796_-	hypothetical protein	NA	X2KU10	Streptococcus_phage	100.0	8.1e-233
WP_000696057.1|1457758_1458244_-	hypothetical protein	NA	X2KUD4	Streptococcus_phage	98.8	1.4e-87
WP_000422308.1|1458243_1458603_-	hypothetical protein	NA	A0A1S5SB89	Streptococcus_phage	99.2	2.3e-58
WP_000157805.1|1458602_1459085_-	siphovirus Gp157 family protein	NA	A0A1S5S7W2	Streptococcus_phage	100.0	1.4e-79
WP_111703804.1|1459063_1459801_-	HNH endonuclease	NA	A0A141E0V1	Streptococcus_phage	97.9	1.6e-133
WP_000252079.1|1459814_1460045_-	hypothetical protein	NA	A0A1S5SDN2	Streptococcus_phage	100.0	6.3e-33
WP_000189400.1|1460045_1460387_-	hypothetical protein	NA	A0A1S5S7X8	Streptococcus_phage	100.0	1.4e-57
WP_000970850.1|1460398_1460590_-	hypothetical protein	NA	A0A1S5SDN5	Streptococcus_phage	100.0	2.3e-28
WP_001050924.1|1460586_1460781_-	hypothetical protein	NA	X2KSX0	Streptococcus_phage	100.0	1.8e-09
WP_000454230.1|1460777_1461050_-	hypothetical protein	NA	A0A1S5SDW9	Streptococcus_phage	100.0	8.8e-42
WP_000834564.1|1461390_1461582_+	hypothetical protein	NA	X2KSW6	Streptococcus_phage	98.4	1.5e-27
WP_001112859.1|1461764_1461956_-	DNA-binding protein	NA	A0A141DZR9	Streptococcus_phage	100.0	3.0e-28
WP_000142893.1|1462020_1462260_+	hypothetical protein	NA	A0A141DZS0	Streptococcus_phage	100.0	4.7e-39
WP_001810072.1|1462483_1462573_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000464160.1|1462986_1463355_+	helix-turn-helix transcriptional regulator	NA	A0A1S5SBE7	Streptococcus_phage	100.0	1.4e-63
WP_061468464.1|1463354_1463594_+	hypothetical protein	NA	A0A1S5SBA0	Streptococcus_phage	100.0	5.2e-38
WP_061468463.1|1463593_1463857_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A1S5SB46	Streptococcus_phage	100.0	5.3e-44
WP_061468462.1|1463869_1464250_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A1S5SBG5	Streptococcus_phage	100.0	9.0e-69
WP_061653510.1|1464266_1465163_+	hypothetical protein	NA	A0A1S5SBK8	Streptococcus_phage	100.0	6.5e-158
WP_061653509.1|1465150_1465357_-	hypothetical protein	NA	A0A1S5SB52	Streptococcus_phage	100.0	1.1e-28
WP_000266847.1|1465537_1466665_+|integrase	site-specific integrase	integrase	A0A1S5SEM0	Streptococcus_phage	100.0	4.5e-209
WP_111703805.1|1467059_1467932_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	29.1	1.9e-05
1466753:1466767	attR	TTATAATTCATCCGC	NA	NA	NA	NA
WP_001140412.1|1467983_1468364_-	RidA family protein	NA	NA	NA	NA	NA
WP_000422599.1|1468374_1468962_-	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA	NA
WP_024478652.1|1468970_1470203_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	59.0	1.4e-131
WP_000442260.1|1470239_1470410_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000162467.1|1470409_1470916_-	dihydrofolate reductase	NA	A0A1B2IBQ4	Erwinia_phage	37.4	3.0e-19
>prophage 8
NZ_LS483448	Streptococcus pneumoniae strain 4041STDY6836167 chromosome 1	2131442	1740220	1747552	2131442		uncultured_Mediterranean_phage(33.33%)	9	NA	NA
WP_000167830.1|1740220_1740922_+	UDP-glucose 4-epimerase GalE	NA	A0A2K9L1R4	Tupanvirus	36.5	1.2e-34
WP_000777237.1|1741344_1742304_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	40.5	9.0e-57
WP_001193668.1|1742293_1743250_+	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA	NA
WP_000764303.1|1743246_1743999_+	ATP-binding cassette domain-containing protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	28.1	5.6e-14
WP_000858263.1|1744094_1745060_+	siderophore ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000821640.1|1745284_1745527_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	59.4	1.3e-17
WP_001222228.1|1745526_1746249_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_000105310.1|1746235_1746805_-	segregation/condensation protein B	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	34.9	5.0e-15
WP_000351907.1|1746823_1747552_-	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	22.3	5.3e-09
>prophage 9
NZ_LS483448	Streptococcus pneumoniae strain 4041STDY6836167 chromosome 1	2131442	1958719	2018758	2131442	tRNA,transposase,holin,protease	Bacillus_phage(30.0%)	56	NA	NA
WP_001092739.1|1958719_1960411_+|tRNA	arginine--tRNA ligase	tRNA	A0A2I2L3K1	Orpheovirus	32.3	1.6e-80
WP_001809936.1|1961244_1961466_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_001809935.1|1961452_1961755_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_000166475.1|1961838_1962546_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	39.6	1.4e-38
WP_000833270.1|1962546_1963878_+	two-component sensor histidine kinase	NA	W8CYF6	Bacillus_phage	34.9	1.9e-33
WP_000669499.1|1964044_1964920_+	phosphate-binding protein	NA	NA	NA	NA	NA
WP_000595182.1|1965037_1965901_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_000049768.1|1965893_1966709_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_000536447.1|1966710_1967463_+	phosphate ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	27.4	1.3e-15
WP_001245789.1|1967477_1968128_+	phosphate signaling complex protein PhoU	NA	NA	NA	NA	NA
WP_000183465.1|1968195_1968621_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_000415108.1|1969387_1970404_+	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_000202232.1|1970425_1971325_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	50.7	2.4e-75
WP_000658498.1|1971391_1972069_-|protease	rhomboid family intramembrane serine protease	protease	NA	NA	NA	NA
WP_000834344.1|1972052_1972592_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_000885068.1|1972603_1973734_-	N-acetyldiaminopimelate deacetylase	NA	NA	NA	NA	NA
WP_000127466.1|1973801_1974500_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase	NA	NA	NA	NA	NA
WP_001812545.1|1974729_1975641_-	EamA family transporter	NA	NA	NA	NA	NA
WP_001180960.1|1975705_1978168_-	penicillin-binding protein	NA	NA	NA	NA	NA
WP_000546870.1|1978309_1979566_+|tRNA	tyrosine--tRNA ligase	tRNA	A0A2C9CYK4	Yersinia_phage	41.3	1.9e-75
WP_000008792.1|1979643_1981707_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	26.0	4.5e-53
WP_000910909.1|1981708_1981987_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001095506.1|1982138_1982987_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_001037913.1|1983587_1984160_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000950156.1|1985204_1987463_-	glycogen/starch/alpha-glucan family phosphorylase	NA	Q8B3H5	Iris_mild_mosaic_virus	37.5	5.7e-09
WP_000747291.1|1987488_1989006_-	4-alpha-glucanotransferase	NA	NA	NA	NA	NA
WP_111703821.1|1989555_1990827_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_000414968.1|1990937_1992230_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_001065636.1|1992231_1993074_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_000938227.1|1993334_1994135_+	DUF1189 domain-containing protein	NA	NA	NA	NA	NA
WP_001145439.1|1994144_1995131_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_000814950.1|1995556_1996498_-	YitT family protein	NA	NA	NA	NA	NA
WP_000830893.1|1996475_1998239_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SJ84	Klosneuvirus	26.4	6.6e-13
WP_000832180.1|1998590_1998821_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000771239.1|1998838_1999480_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000730275.1|1999491_2000226_-	DUF3169 family protein	NA	NA	NA	NA	NA
WP_001046145.1|2000228_2000426_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001176227.1|2000425_2000632_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000270083.1|2000641_2000956_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000775884.1|2001296_2002586_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000770584.1|2002663_2003911_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000434969.1|2004103_2004955_-	transcriptional regulator Rgg	NA	NA	NA	NA	NA
WP_001204054.1|2005078_2005420_+	metal-sulfur cluster assembly factor	NA	NA	NA	NA	NA
WP_000137351.1|2005763_2007467_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_000986375.1|2007699_2008632_-	transketolase family protein	NA	NA	NA	NA	NA
WP_000603780.1|2008628_2009486_-	transketolase	NA	A0A2K9L6P9	Tupanvirus	31.2	4.2e-29
WP_000975292.1|2009489_2010836_-	PTS ascorbate transporter subunit IIC	NA	NA	NA	NA	NA
WP_000912476.1|2010848_2011133_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_000460944.1|2011136_2013167_-	BglG family transcription antiterminator	NA	NA	NA	NA	NA
WP_000136825.1|2013357_2014365_+	SPFH domain-containing protein	NA	NA	NA	NA	NA
WP_000796544.1|2014367_2014568_+	PTS ascorbate transporter subunit IIC	NA	NA	NA	NA	NA
WP_000290419.1|2014719_2014902_+	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_001265622.1|2014917_2015067_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_000753865.1|2015558_2017484_-|holin	choline-binding protein PcpA	holin	NA	NA	NA	NA
WP_000647182.1|2018368_2018515_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_172448390.1|2018521_2018758_+|transposase	transposase	transposase	NA	NA	NA	NA
