assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900478325.1_33962_G01	NZ_LS483486	Haemophilus influenzae strain NCTC12194 chromosome 1	1	381150-381234	1	CRISPRCasFinder	no		cas3,DEDDh,WYL	Orphan	AAGCCCACCCTACAACTACTAAA	23	1	1	381173-381211	NZ_LS483486.1_437771-437809	NA	1	1	Orphan	cas3,DEDDh,WYL	NA,NA	NA|226aa|up_9|NZ_LS483486.1_371917_372595_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|159aa|up_8|NZ_LS483486.1_372591_373068_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|145aa|up_7|NZ_LS483486.1_373372_373807_-	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional	NA|147aa|up_6|NZ_LS483486.1_373803_374244_-	PRK09004, PRK09004, FMN-binding protein MioC; Provisional	NA|334aa|up_5|NZ_LS483486.1_374721_375723_+	TIGR00330, Fructose-16-bisphosphatase_class_2, fructose-1,6-bisphosphatase, class II	NA|103aa|up_4|NZ_LS483486.1_375917_376226_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|107aa|up_3|NZ_LS483486.1_376213_376534_+	COG3550, HipA, Toxin module HipA, protein kinase of phosphatidylinositol 3/4-kinase superfamily [General function prediction only]	NA|344aa|up_2|NZ_LS483486.1_376530_377562_+	COG3550, HipA, Toxin module HipA, protein kinase of phosphatidylinositol 3/4-kinase superfamily [General function prediction only]	NA|553aa|up_1|NZ_LS483486.1_377645_379304_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|582aa|up_0|NZ_LS483486.1_379296_381042_-	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|1048aa|down_0|NZ_LS483486.1_381443_384587_+	TIGR01776, Lactoferrin-binding_protein_A, TonB-dependent lactoferrin and transferrin receptors	NA|61aa|down_1|NZ_LS483486.1_384847_385030_+	COG4679, COG4679, Phage-related protein [Function unknown]	NA|99aa|down_2|NZ_LS483486.1_385022_385319_+	pfam01381, HTH_3, Helix-turn-helix	NA|639aa|down_3|NZ_LS483486.1_385479_387396_+	PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional	NA|179aa|down_4|NZ_LS483486.1_387405_387942_+	COG0551, TopA, Zn-finger domain associated with topoisomerase type I [DNA replication, recombination, and repair]	NA|184aa|down_5|NZ_LS483486.1_387957_388509_+	PRK10634, PRK10634, L-threonylcarbamoyladenylate synthase type 1 TsaC	NA|269aa|down_6|NZ_LS483486.1_388512_389319_+	TIGR00507, Shikimate_dehydrogenase, shikimate dehydrogenase	NA|251aa|down_7|NZ_LS483486.1_389330_390083_+	pfam12686, DUF3800, Protein of unknown function (DUF3800)	NA|188aa|down_8|NZ_LS483486.1_390197_390761_+	pfam03352, Adenine_glyco, Methyladenine glycosylase	NA|255aa|down_9|NZ_LS483486.1_390757_391522_-	cd02511, Beta4Glucosyltransferase, UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide
GCF_900478325.1_33962_G01	NZ_LS483486	Haemophilus influenzae strain NCTC12194 chromosome 1	2	1170184-1170332	2	CRISPRCasFinder	no	DEDDh	cas3,DEDDh,WYL	Unclear	TTGGAGCGGGAAACGAGGCTCGAACTCGCGACCCCGACCTTGGCAAGGT	49	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,WYL	NA,NA	NA|246aa|up_9|NZ_LS483486.1_1157658_1158396_+	cd10800, LamB_YcsF_YbgL_like, Escherichia coli putative lactam utilization protein YbgL and similar proteins	NA|398aa|up_8|NZ_LS483486.1_1158439_1159633_+	COG1914, MntH, Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]	NA|445aa|up_7|NZ_LS483486.1_1159703_1161038_-	PRK05370, PRK05370, argininosuccinate synthase; Validated	NA|291aa|up_6|NZ_LS483486.1_1161193_1162066_-	PRK13961, PRK13961, phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional	NA|783aa|up_5|NZ_LS483486.1_1162230_1164579_-	TIGR02071, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein 1B	NA|118aa|up_4|NZ_LS483486.1_1164585_1164939_-	COG3112, COG3112, Uncharacterized protein conserved in bacteria [Function unknown]	NA|115aa|up_3|NZ_LS483486.1_1164940_1165285_-	PRK13623, PRK13623, iron-sulfur cluster insertion protein ErpA; Provisional	NA|269aa|up_2|NZ_LS483486.1_1165420_1166227_+	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|864aa|up_1|NZ_LS483486.1_1166320_1168912_+	PRK01759, glnD, bifunctional uridylyltransferase/uridylyl-removing protein GlnD	NA|356aa|up_0|NZ_LS483486.1_1168986_1170054_+	TIGR02380, ECA_wecA, undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase	DEDDh|183aa|down_0|NZ_LS483486.1_1170453_1171002_-	PRK05359, PRK05359, oligoribonuclease; Provisional	NA|347aa|down_1|NZ_LS483486.1_1171072_1172113_+	PRK12288, PRK12288, small ribosomal subunit biogenesis GTPase RsgA	NA|86aa|down_2|NZ_LS483486.1_1172271_1172529_+	PRK10850, PRK10850, phosphocarrier protein Hpr	NA|576aa|down_3|NZ_LS483486.1_1172616_1174344_+	PRK11177, PRK11177, phosphoenolpyruvate-protein phosphotransferase PtsI	NA|167aa|down_4|NZ_LS483486.1_1174403_1174904_+	PRK09439, PRK09439, PTS system glucose-specific transporter subunit; Provisional	NA|71aa|down_5|NZ_LS483486.1_1175087_1175300_+	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|122aa|down_6|NZ_LS483486.1_1175414_1175780_+	TIGR00156, Uncharacterized_protein_HI_1709, TIGR00156 family protein	NA|222aa|down_7|NZ_LS483486.1_1175844_1176510_+	PRK10336, PRK10336, two-component system response regulator QseB	NA|452aa|down_8|NZ_LS483486.1_1176506_1177862_+	PRK10337, PRK10337, sensor protein QseC; Provisional	NA|676aa|down_9|NZ_LS483486.1_1178138_1180166_+	COG1292, BetT, Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
GCF_900478325.1_33962_G01	NZ_LS483486	Haemophilus influenzae strain NCTC12194 chromosome 1	3	1199048-1199135	3	CRISPRCasFinder	no		cas3,DEDDh,WYL	Orphan	ACCTTCCCCCGCAAGCAAGGGAAGG	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,WYL	NA,NA	NA|354aa|up_9|NZ_LS483486.1_1189643_1190705_+	cd03820, GT4_AmsD-like, amylovoran biosynthesis glycosyltransferase AmsD and similar proteins	NA|258aa|up_8|NZ_LS483486.1_1190716_1191490_+	COG3306, COG3306, Glycosyltransferase involved in LPS biosynthesis [Cell envelope biogenesis, outer membrane]	NA|295aa|up_7|NZ_LS483486.1_1191501_1192386_+	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|268aa|up_6|NZ_LS483486.1_1192387_1193191_+	cd04195, GT2_AmsE_like, GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis	NA|256aa|up_5|NZ_LS483486.1_1193300_1194068_-	PRK10676, PRK10676, DNA-binding transcriptional regulator ModE; Provisional	NA|255aa|up_4|NZ_LS483486.1_1194205_1194970_+	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|243aa|up_3|NZ_LS483486.1_1195104_1195833_+	PRK09421, modB, molybdate ABC transporter permease subunit	NA|352aa|up_2|NZ_LS483486.1_1195819_1196875_+	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|458aa|up_1|NZ_LS483486.1_1196898_1198272_-	cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain	NA|212aa|up_0|NZ_LS483486.1_1198330_1198966_-	PRK10702, PRK10702, endonuclease III; Provisional	NA|236aa|down_0|NZ_LS483486.1_1199150_1199858_-	PRK12405, PRK12405, electron transport complex RsxE subunit; Provisional	NA|208aa|down_1|NZ_LS483486.1_1199859_1200483_-	PRK01908, PRK01908, electron transport complex protein RnfG; Validated	NA|359aa|down_2|NZ_LS483486.1_1200482_1201559_-	PRK00816, rnfD, electron transport complex protein RnfD; Reviewed	NA|652aa|down_3|NZ_LS483486.1_1201563_1203519_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|194aa|down_4|NZ_LS483486.1_1203519_1204101_-	PRK05113, PRK05113, electron transport complex protein RnfB; Provisional	NA|193aa|down_5|NZ_LS483486.1_1204188_1204767_-	PRK05151, PRK05151, electron transport complex protein RsxA; Provisional	NA|354aa|down_6|NZ_LS483486.1_1205051_1206113_-	PRK11778, PRK11778, putative inner membrane peptidase; Provisional	NA|719aa|down_7|NZ_LS483486.1_1207044_1209201_+	TIGR01666, Uncharacterized_protein_HI_1680, TIGR01666 family membrane protein	NA|651aa|down_8|NZ_LS483486.1_1209278_1211231_-	pfam18254, HMw1_D2, HMW1 domain 2	NA|67aa|down_9|NZ_LS483486.1_1211259_1211460_+	pfam13779, DUF4175, Domain of unknown function (DUF4175)
GCF_900478325.1_33962_G01	NZ_LS483486	Haemophilus influenzae strain NCTC12194 chromosome 1	4	1268042-1268136	4	CRISPRCasFinder	no		cas3,DEDDh,WYL	Orphan	CAGGAGCTGCTGCCTGTGGTGCT	23	1	1	1268065-1268113	NZ_LS483486.1_1268029-1268077	NA	1	1	Orphan	cas3,DEDDh,WYL	NA,NA|267aa|down_7|NZ_LS483486.1_1279321_1280122_+	NA|98aa|up_9|NZ_LS483486.1_1257293_1257587_+	COG3771, COG3771, Predicted membrane protein [Function unknown]	NA|397aa|up_8|NZ_LS483486.1_1257586_1258777_+	COG2956, COG2956, Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]	NA|231aa|up_7|NZ_LS483486.1_1258800_1259493_+	PRK00230, PRK00230, orotidine-5'-phosphate decarboxylase	NA|107aa|up_6|NZ_LS483486.1_1259499_1259820_+	PRK09019, PRK09019, stress response translation initiation inhibitor YciH	NA|232aa|up_5|NZ_LS483486.1_1259848_1260544_-	PRK06893, PRK06893, DnaA regulatory inactivator Hda	NA|415aa|up_4|NZ_LS483486.1_1260609_1261854_-	TIGR00801, Uric_acid_permease, uracil-xanthine permease	NA|209aa|up_3|NZ_LS483486.1_1261957_1262584_-	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed	NA|689aa|up_2|NZ_LS483486.1_1262707_1264774_-	PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated	NA|181aa|up_1|NZ_LS483486.1_1264785_1265328_-	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional	NA|475aa|up_0|NZ_LS483486.1_1265487_1266912_-	PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed	NA|887aa|down_0|NZ_LS483486.1_1268785_1271446_-	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed	NA|153aa|down_1|NZ_LS483486.1_1271745_1272204_+	PRK05234, mgsA, methylglyoxal synthase; Validated	NA|481aa|down_2|NZ_LS483486.1_1272360_1273803_-	COG5339, COG5339, Uncharacterized protein conserved in bacteria [Function unknown]	NA|636aa|down_3|NZ_LS483486.1_1274069_1275977_+	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|382aa|down_4|NZ_LS483486.1_1276063_1277209_+	PRK10767, PRK10767, chaperone protein DnaJ; Provisional	NA|418aa|down_5|NZ_LS483486.1_1277287_1278541_-	PRK00197, proA, gamma-glutamyl phosphate reductase; Provisional	NA|221aa|down_6|NZ_LS483486.1_1278561_1279224_-	COG2860, COG2860, Predicted membrane protein [Function unknown]	NA|267aa|down_7|NZ_LS483486.1_1279321_1280122_+	NA	NA|399aa|down_8|NZ_LS483486.1_1280153_1281350_-	PRK11102, PRK11102, Bcr/CflA family multidrug efflux MFS transporter	NA|233aa|down_9|NZ_LS483486.1_1281351_1282050_-	PRK10839, PRK10839, 16S rRNA pseudouridine(516) synthase RsuA
