assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_901542365.1_41825_F01	NZ_LR594034	Streptococcus dysgalactiae subsp. equisimilis strain NCTC8546 chromosome 1	1	1219276-1219839	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1,cas9	cas3,DEDDh,DinG,csm6,csn2,cas2,cas1,cas9,csa3	Type II-C,Type II-B,Type II-A	GTTTTGGGACCATTCAAAACAACATAGCTCTAAAAC,GTTTTGGGACCATTCAAAACAACATAGCTCTAAAAC,GTTTTGGGACCATTCAAAACAACATAGCTCTAAAAC	36,36,36	0	0	NA	NA	II-A,II-B:II-A,II-B:II-A,II-B	8,8,7	8	TypeII-C,TypeII-B,TypeII-A	cas3,DEDDh,DinG,csm6,csn2,cas2,cas1,cas9,csa3	NA,NA|214aa|down_8|NZ_LR594034.1_1229739_1230381_-	NA|164aa|up_9|NZ_LR594034.1_1211158_1211650_-	COG3444, COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism]	NA|142aa|up_8|NZ_LR594034.1_1211668_1212094_-	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|340aa|up_7|NZ_LR594034.1_1212300_1213320_-	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|390aa|up_6|NZ_LR594034.1_1213430_1214600_-	pfam11187, DUF2974, Protein of unknown function (DUF2974)	NA|99aa|up_5|NZ_LR594034.1_1214789_1215086_-	pfam08951, EntA_Immun, Enterocin A Immunity	NA|77aa|up_4|NZ_LR594034.1_1215085_1215316_-	pfam01721, Bacteriocin_II, Class II bacteriocin	NA|217aa|up_3|NZ_LR594034.1_1215523_1216174_-	COG1418, COG1418, Predicted HD superfamily hydrolase [General function prediction only]	NA|146aa|up_2|NZ_LR594034.1_1216186_1216624_-	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|611aa|up_1|NZ_LR594034.1_1216799_1218632_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|153aa|up_0|NZ_LR594034.1_1218701_1219160_-	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated	csn2|221aa|down_0|NZ_LR594034.1_1219941_1220604_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|114aa|down_1|NZ_LR594034.1_1220593_1220935_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|290aa|down_2|NZ_LR594034.1_1220931_1221801_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1372aa|down_3|NZ_LR594034.1_1221800_1225916_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|210aa|down_4|NZ_LR594034.1_1226392_1227022_-	COG4478, COG4478, Predicted membrane protein [Function unknown]	NA|255aa|down_5|NZ_LR594034.1_1227021_1227786_-	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|251aa|down_6|NZ_LR594034.1_1227785_1228538_-	COG3884, FatA, Acyl-ACP thioesterase [Lipid metabolism]	NA|377aa|down_7|NZ_LR594034.1_1228547_1229678_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|214aa|down_8|NZ_LR594034.1_1229739_1230381_-	NA	NA|452aa|down_9|NZ_LR594034.1_1230504_1231860_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional
GCF_901542365.1_41825_F01	NZ_LR594034	Streptococcus dysgalactiae subsp. equisimilis strain NCTC8546 chromosome 1	2	1487892-1488066	2	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csm6,csn2,cas2,cas1,cas9,csa3	Type I-A	AAAAAATTTTTATTAAAAAGCGGAA	25	0	0	NA	NA	NA	2	2	Orphan	cas3,DEDDh,DinG,csm6,csn2,cas2,cas1,cas9,csa3	NA|61aa|up_5|NZ_LR594034.1_1482413_1482596_-,NA|76aa|up_4|NZ_LR594034.1_1482684_1482912_-,NA|168aa|up_3|NZ_LR594034.1_1483096_1483600_-,NA|108aa|down_0|NZ_LR594034.1_1488218_1488542_+,NA|56aa|down_3|NZ_LR594034.1_1490227_1490395_+,NA|202aa|down_5|NZ_LR594034.1_1492438_1493044_-,NA|114aa|down_7|NZ_LR594034.1_1495407_1495749_+	NA|419aa|up_9|NZ_LR594034.1_1477734_1478991_-	cd00315, Cyt_C5_DNA_methylase, Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology	NA|419aa|up_8|NZ_LR594034.1_1478987_1480244_-	cd16401, ParB_N_like_MT, ParB N-terminal-like domain, some attached to C-terminal S-adenosylmethionine-dependent methyltransferase domain	NA|122aa|up_7|NZ_LR594034.1_1480961_1481327_-	cd00085, HNHc, HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins	NA|346aa|up_6|NZ_LR594034.1_1481328_1482366_-	PRK12459, PRK12459, S-adenosylmethionine synthetase; Provisional	NA|61aa|up_5|NZ_LR594034.1_1482413_1482596_-	NA	NA|76aa|up_4|NZ_LR594034.1_1482684_1482912_-	NA	NA|168aa|up_3|NZ_LR594034.1_1483096_1483600_-	NA	NA|459aa|up_2|NZ_LR594034.1_1483592_1484969_-	cd18013, DEXQc_bact_SNF2, DEXQ-box helicase domain of bacterial SNF2 family proteins	NA|94aa|up_1|NZ_LR594034.1_1484949_1485231_-	smart00990, VRR_NUC, This model contains proteins with the VRR-NUC domain	NA|762aa|up_0|NZ_LR594034.1_1485515_1487801_-	TIGR01613, putative_primase, phage/plasmid primase, P4 family, C-terminal domain	NA|108aa|down_0|NZ_LR594034.1_1488218_1488542_+	NA	NA|374aa|down_1|NZ_LR594034.1_1488534_1489656_+	pfam10926, DUF2800, Protein of unknown function (DUF2800)	NA|183aa|down_2|NZ_LR594034.1_1489660_1490209_+	pfam10991, DUF2815, Protein of unknown function (DUF2815)	NA|56aa|down_3|NZ_LR594034.1_1490227_1490395_+	NA	NA|652aa|down_4|NZ_LR594034.1_1490443_1492399_+	cd08642, DNA_pol_A_pol_I_A, Polymerase I functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication	NA|202aa|down_5|NZ_LR594034.1_1492438_1493044_-	NA	NA|623aa|down_6|NZ_LR594034.1_1493448_1495317_-	pfam06114, Peptidase_M78, IrrE N-terminal-like domain	NA|114aa|down_7|NZ_LR594034.1_1495407_1495749_+	NA	NA|492aa|down_8|NZ_LR594034.1_1496059_1497535_-	pfam09563, RE_LlaJI, LlaJI restriction endonuclease	NA|703aa|down_9|NZ_LR594034.1_1497549_1499658_-	PRK11331, PRK11331, 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
GCF_901542365.1_41825_F01	NZ_LR594034	Streptococcus dysgalactiae subsp. equisimilis strain NCTC8546 chromosome 1	3	1820488-1820565	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csm6,csn2,cas2,cas1,cas9,csa3	Orphan	ACCACTCGCTCTTTGTCTCTAGGCTC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csm6,csn2,cas2,cas1,cas9,csa3	NA,NA	NA|411aa|up_9|NZ_LR594034.1_1811423_1812656_-	PRK07314, PRK07314, beta-ketoacyl-ACP synthase II	NA|245aa|up_8|NZ_LR594034.1_1812670_1813405_-	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|307aa|up_7|NZ_LR594034.1_1813416_1814337_-	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]	NA|324aa|up_6|NZ_LR594034.1_1814361_1815333_-	TIGR03151, enACPred_II, putative enoyl-[acyl-carrier-protein] reductase II	NA|75aa|up_5|NZ_LR594034.1_1815531_1815756_-	PRK00982, acpP, acyl carrier protein; Provisional	NA|325aa|up_4|NZ_LR594034.1_1815816_1816791_-	PRK09352, PRK09352, beta-ketoacyl-ACP synthase 3	NA|145aa|up_3|NZ_LR594034.1_1816791_1817226_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|264aa|up_2|NZ_LR594034.1_1817302_1818094_-	PRK07260, PRK07260, enoyl-CoA hydratase; Provisional	NA|379aa|up_1|NZ_LR594034.1_1818315_1819452_-	PRK14276, PRK14276, chaperone protein DnaJ; Provisional	NA|230aa|up_0|NZ_LR594034.1_1819685_1820375_-	cd03140, GATase1_PfpI_3, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus	NA|609aa|down_0|NZ_LR594034.1_1820593_1822420_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|181aa|down_1|NZ_LR594034.1_1822537_1823080_-	PRK14156, PRK14156, heat shock protein GrpE; Provisional	NA|345aa|down_2|NZ_LR594034.1_1823121_1824156_-	PRK00082, hrcA, heat-inducible transcription repressor; Provisional	NA|190aa|down_3|NZ_LR594034.1_1824290_1824860_-	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion]	NA|248aa|down_4|NZ_LR594034.1_1824856_1825600_-	COG1876, VanY, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane]	NA|236aa|down_5|NZ_LR594034.1_1825589_1826297_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|79aa|down_6|NZ_LR594034.1_1826602_1826839_-	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|314aa|down_7|NZ_LR594034.1_1826909_1827851_-	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|480aa|down_8|NZ_LR594034.1_1828074_1829514_-	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA|489aa|down_9|NZ_LR594034.1_1829513_1830980_-	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA
