assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_901827175.1_ASM90182717v1	NZ_LR594662	Variovorax sp. RA8 chromosome 1	1	766212-766397	1	CRISPRCasFinder	no		csa3,DEDDh,DinG,cas3,WYL	Orphan	GCGATCGGCGGCCCCGGGTCGTCGCGG	27	0	0	NA	NA	NA	2	2	Orphan	csa3,DEDDh,DinG,cas3,WYL,cas14i,c2c9_V-U4	NA|109aa|up_8|NZ_LR594662.1_757358_757685_-,NA|101aa|up_7|NZ_LR594662.1_757710_758013_-,NA|68aa|up_6|NZ_LR594662.1_758176_758380_+,NA|278aa|up_5|NZ_LR594662.1_758435_759269_+,NA|460aa|up_4|NZ_LR594662.1_759265_760645_+,NA	NA|340aa|up_9|NZ_LR594662.1_754182_755202_-	cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC)	NA|109aa|up_8|NZ_LR594662.1_757358_757685_-	NA	NA|101aa|up_7|NZ_LR594662.1_757710_758013_-	NA	NA|68aa|up_6|NZ_LR594662.1_758176_758380_+	NA	NA|278aa|up_5|NZ_LR594662.1_758435_759269_+	NA	NA|460aa|up_4|NZ_LR594662.1_759265_760645_+	NA	NA|342aa|up_3|NZ_LR594662.1_761798_762824_+	cd19993, PBP1_ABC_xylose_binding-like, periplasmic xylose-like sugar-binding component of the ABC-type transport systems	NA|397aa|up_2|NZ_LR594662.1_762837_764028_+	COG4214, XylH, ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]	NA|260aa|up_1|NZ_LR594662.1_764084_764864_+	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|326aa|up_0|NZ_LR594662.1_764888_765866_-	cd13576, PBP2_BugD_Asp, Aspartic acid transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold	NA|446aa|down_0|NZ_LR594662.1_767274_768612_-	PRK07583, PRK07583, cytosine deaminase	NA|186aa|down_1|NZ_LR594662.1_768753_769311_+	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus	NA|416aa|down_2|NZ_LR594662.1_769382_770630_-	cd05913, PaaK, Phenylacetate-CoA ligase (also known as PaaK)	NA|271aa|down_3|NZ_LR594662.1_770626_771439_-	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]	NA|439aa|down_4|NZ_LR594662.1_771575_772892_-	cd06334, PBP1_ABC_ligand_binding-like, type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions	NA|355aa|down_5|NZ_LR594662.1_772932_773997_-	cd06581, TM_PBP1_LivM_like, Transmembrane subunit (TM) of Escherichia coli LivM and related proteins	NA|310aa|down_6|NZ_LR594662.1_773999_774929_-	cd06582, TM_PBP1_LivH_like, Transmembrane subunit (TM) of Escherichia coli LivH and related proteins	NA|278aa|down_7|NZ_LR594662.1_774928_775762_-	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system	NA|653aa|down_8|NZ_LR594662.1_775758_777717_-	cd17641, LC_FACS_bac1, bacterial long-chain fatty acid CoA synthetase	NA|241aa|down_9|NZ_LR594662.1_777801_778524_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
GCF_901827175.1_ASM90182717v1	NZ_LR594662	Variovorax sp. RA8 chromosome 1	2	780111-780225	2	CRISPRCasFinder	no		csa3,DEDDh,DinG,cas3,WYL	Orphan	AGGGGGTGGGCGGCTACACGCAGTGAGCCAACCTGGGGG	39	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,cas3,WYL,cas14i,c2c9_V-U4	NA,NA|71aa|down_1|NZ_LR594662.1_781570_781783_-,NA|33aa|down_2|NZ_LR594662.1_782117_782216_+	NA|416aa|up_9|NZ_LR594662.1_769382_770630_-	cd05913, PaaK, Phenylacetate-CoA ligase (also known as PaaK)	NA|271aa|up_8|NZ_LR594662.1_770626_771439_-	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]	NA|439aa|up_7|NZ_LR594662.1_771575_772892_-	cd06334, PBP1_ABC_ligand_binding-like, type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions	NA|355aa|up_6|NZ_LR594662.1_772932_773997_-	cd06581, TM_PBP1_LivM_like, Transmembrane subunit (TM) of Escherichia coli LivM and related proteins	NA|310aa|up_5|NZ_LR594662.1_773999_774929_-	cd06582, TM_PBP1_LivH_like, Transmembrane subunit (TM) of Escherichia coli LivH and related proteins	NA|278aa|up_4|NZ_LR594662.1_774928_775762_-	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system	NA|653aa|up_3|NZ_LR594662.1_775758_777717_-	cd17641, LC_FACS_bac1, bacterial long-chain fatty acid CoA synthetase	NA|241aa|up_2|NZ_LR594662.1_777801_778524_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|217aa|up_1|NZ_LR594662.1_778524_779175_-	pfam02586, SRAP, SOS response associated peptidase (SRAP)	NA|255aa|up_0|NZ_LR594662.1_779275_780040_+	PRK07023, PRK07023, SDR family oxidoreductase	NA|321aa|down_0|NZ_LR594662.1_780233_781196_-	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|71aa|down_1|NZ_LR594662.1_781570_781783_-	NA	NA|33aa|down_2|NZ_LR594662.1_782117_782216_+	NA	NA|602aa|down_3|NZ_LR594662.1_782339_784145_+	PRK05482, PRK05482, potassium-transporting ATPase subunit A; Provisional	NA|698aa|down_4|NZ_LR594662.1_784286_786380_+	PRK01122, PRK01122, potassium-transporting ATPase subunit KdpB	NA|191aa|down_5|NZ_LR594662.1_786392_786965_+	pfam02669, KdpC, K+-transporting ATPase, c chain	NA|914aa|down_6|NZ_LR594662.1_787020_789762_+	PRK10490, PRK10490, sensor protein KdpD; Provisional	NA|231aa|down_7|NZ_LR594662.1_789776_790469_+	PRK10529, PRK10529, DNA-binding transcriptional activator KdpE; Provisional	NA|91aa|down_8|NZ_LR594662.1_790496_790769_-	pfam14026, DUF4242, Protein of unknown function (DUF4242)	NA|256aa|down_9|NZ_LR594662.1_790917_791685_+	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]
GCF_901827175.1_ASM90182717v1	NZ_LR594662	Variovorax sp. RA8 chromosome 1	3	888075-888214	3	CRISPRCasFinder	no	csa3	csa3,DEDDh,DinG,cas3,WYL	Type I-A	AGGGGGTGGGCGGCTACACGAAGTGAGCCAACCTGGGGGCGAGC	44	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,cas3,WYL,cas14i,c2c9_V-U4	NA,NA|277aa|down_7|NZ_LR594662.1_895721_896552_-	NA|331aa|up_9|NZ_LR594662.1_877757_878750_+	COG3181, COG3181, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|231aa|up_8|NZ_LR594662.1_878784_879477_-	COG0640, ArsR, Predicted transcriptional regulators [Transcription]	NA|386aa|up_7|NZ_LR594662.1_879528_880686_+	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|318aa|up_6|NZ_LR594662.1_880702_881656_-	COG3576, COG3576, Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase [General function prediction only]	NA|215aa|up_5|NZ_LR594662.1_881652_882297_-	cd03206, GST_C_7, C-terminal, alpha helical domain of an unknown subfamily 7 of Glutathione S-transferases	NA|295aa|up_4|NZ_LR594662.1_882403_883288_+	cd08471, PBP2_CrgA_like_2, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold	NA|326aa|up_3|NZ_LR594662.1_883514_884492_+	PRK13537, PRK13537, nodulation factor ABC transporter ATP-binding protein NodI	NA|280aa|up_2|NZ_LR594662.1_884595_885435_+	TIGR01291, Nodulation_protein_J, ABC-2 type transporter, NodJ family	NA|409aa|up_1|NZ_LR594662.1_885545_886772_-	pfam04286, DUF445, Protein of unknown function (DUF445)	NA|404aa|up_0|NZ_LR594662.1_886768_887980_-	PRK07522, PRK07522, acetylornithine deacetylase; Provisional	NA|405aa|down_0|NZ_LR594662.1_888255_889470_+	cd05666, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily	NA|375aa|down_1|NZ_LR594662.1_889466_890591_+	pfam10994, DUF2817, Protein of unknown function (DUF2817)	NA|375aa|down_2|NZ_LR594662.1_890594_891719_-	cd19978, PBP1_ABC_ligand_binding-like, periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to be involved in the uptake of amino acids, peptides, or inorganic ions	NA|677aa|down_3|NZ_LR594662.1_891790_893821_+	cd02766, MopB_3, The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site	NA|381aa|down_4|NZ_LR594662.1_893890_895033_+	pfam10023, Aminopep, Putative aminopeptidase	NA|113aa|down_5|NZ_LR594662.1_895025_895364_+	pfam09650, PHA_gran_rgn, Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn)	NA|86aa|down_6|NZ_LR594662.1_895391_895649_-	pfam00887, ACBP, Acyl CoA binding protein	NA|277aa|down_7|NZ_LR594662.1_895721_896552_-	NA	NA|225aa|down_8|NZ_LR594662.1_896559_897234_-	pfam13972, TetR, Bacterial transcriptional repressor	NA|165aa|down_9|NZ_LR594662.1_897347_897842_-	pfam05597, Phasin, Poly(hydroxyalcanoate) granule associated protein (phasin)
GCF_901827175.1_ASM90182717v1	NZ_LR594662	Variovorax sp. RA8 chromosome 1	4	1269490-1269575	4	CRISPRCasFinder	no		csa3,DEDDh,DinG,cas3,WYL	Orphan	GGGCAAGGCGGCCAGGGCAACCC	23	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,cas3,WYL,cas14i,c2c9_V-U4	NA|73aa|up_2|NZ_LR594662.1_1267133_1267352_-,NA|99aa|down_2|NZ_LR594662.1_1271898_1272195_-,NA|56aa|down_3|NZ_LR594662.1_1272201_1272369_-,NA|158aa|down_6|NZ_LR594662.1_1273866_1274340_-	NA|328aa|up_9|NZ_LR594662.1_1258365_1259349_-	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|720aa|up_8|NZ_LR594662.1_1259381_1261541_-	COG1042, COG1042, Acyl-CoA synthetase (NDP forming) [Energy production and conversion]	NA|294aa|up_7|NZ_LR594662.1_1261711_1262593_+	cd00377, ICL_PEPM, Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage	NA|466aa|up_6|NZ_LR594662.1_1262594_1263992_+	PRK12466, PRK12466, 3-isopropylmalate dehydratase large subunit	NA|207aa|up_5|NZ_LR594662.1_1263988_1264609_+	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit	NA|323aa|up_4|NZ_LR594662.1_1264646_1265615_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|388aa|up_3|NZ_LR594662.1_1265633_1266797_+	COG2828, COG2828, Uncharacterized protein conserved in bacteria [Function unknown]	NA|73aa|up_2|NZ_LR594662.1_1267133_1267352_-	NA	NA|157aa|up_1|NZ_LR594662.1_1267558_1268029_-	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|354aa|up_0|NZ_LR594662.1_1268171_1269233_-	pfam13708, DUF4942, Domain of unknown function (DUF4942)	NA|95aa|down_0|NZ_LR594662.1_1270413_1270698_-	COG3932, COG3932, Uncharacterized ABC-type transport system, permease components [General function prediction only]	NA|334aa|down_1|NZ_LR594662.1_1270801_1271803_-	TIGR03718, R_switched_Alx, integral membrane protein, TerC family	NA|99aa|down_2|NZ_LR594662.1_1271898_1272195_-	NA	NA|56aa|down_3|NZ_LR594662.1_1272201_1272369_-	NA	NA|156aa|down_4|NZ_LR594662.1_1272617_1273085_-	cd12919, VKOR_2, Vitamin K epoxide reductase family in bacteria	NA|134aa|down_5|NZ_LR594662.1_1273484_1273886_-	cd07176, terB, tellurite resistance protein terB	NA|158aa|down_6|NZ_LR594662.1_1273866_1274340_-	NA	NA|132aa|down_7|NZ_LR594662.1_1274336_1274732_-	cd07177, terB_like, tellurium resistance terB-like protein	NA|58aa|down_8|NZ_LR594662.1_1274854_1275028_-	COG3809, COG3809, Uncharacterized protein conserved in bacteria [Function unknown]	NA|234aa|down_9|NZ_LR594662.1_1275051_1275753_-	cd10433, YccA_like, YccA-like proteins
GCF_901827175.1_ASM90182717v1	NZ_LR594662	Variovorax sp. RA8 chromosome 1	5	4710041-4710123	5	CRISPRCasFinder	no		csa3,DEDDh,DinG,cas3,WYL	Orphan	GCCGCACGGCCGTTCCGAAGGCG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,cas3,WYL,cas14i,c2c9_V-U4	NA,NA	NA|387aa|up_9|NZ_LR594662.1_4699438_4700599_+	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|388aa|up_8|NZ_LR594662.1_4700608_4701772_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|219aa|up_7|NZ_LR594662.1_4701818_4702475_-	pfam03352, Adenine_glyco, Methyladenine glycosylase	NA|150aa|up_6|NZ_LR594662.1_4702471_4702921_-	PRK05395, PRK05395, type II 3-dehydroquinate dehydratase	NA|354aa|up_5|NZ_LR594662.1_4703185_4704247_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|83aa|up_4|NZ_LR594662.1_4704496_4704745_+	COG3618, COG3618, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|227aa|up_3|NZ_LR594662.1_4705639_4706320_-	COG1802, GntR, Transcriptional regulators [Transcription]	NA|361aa|up_2|NZ_LR594662.1_4706428_4707511_+	cd19963, PBP1_BMP-like, periplasmic binding component of a basic membrane lipoprotein (BMP) from Brucella abortus and its close homologs in other bacteria	NA|225aa|up_1|NZ_LR594662.1_4707522_4708197_+	cd03469, Rieske_RO_Alpha_N, Rieske non-heme iron oxygenase (RO) family, N-terminal Rieske domain of the oxygenase alpha subunit; The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms	NA|286aa|up_0|NZ_LR594662.1_4709182_4710040_+	cd06185, PDR_like, Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster	NA|215aa|down_0|NZ_LR594662.1_4710177_4710822_+	cd03206, GST_C_7, C-terminal, alpha helical domain of an unknown subfamily 7 of Glutathione S-transferases	NA|369aa|down_1|NZ_LR594662.1_4710877_4711984_+	cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases	NA|304aa|down_2|NZ_LR594662.1_4711997_4712909_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|286aa|down_3|NZ_LR594662.1_4712905_4713763_+	TIGR02821, S-formylglutathione_hydrolase, S-formylglutathione hydrolase	NA|125aa|down_4|NZ_LR594662.1_4713786_4714161_+	pfam04993, TfoX_N, TfoX N-terminal domain	NA|251aa|down_5|NZ_LR594662.1_4714264_4715017_-	NF033203, entero_EhxA, enterohemolysin EhxA	NA|760aa|down_6|NZ_LR594662.1_4715303_4717583_-	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	NA|166aa|down_7|NZ_LR594662.1_4718940_4719438_-	COG3265, GntK, Gluconate kinase [Carbohydrate transport and metabolism]	NA|1072aa|down_8|NZ_LR594662.1_4719553_4722769_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|403aa|down_9|NZ_LR594662.1_4722773_4723982_+	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit
GCF_901827175.1_ASM90182717v1	NZ_LR594662	Variovorax sp. RA8 chromosome 1	6	4852463-4852567	6	CRISPRCasFinder	no		csa3,DEDDh,DinG,cas3,WYL	Orphan	GGCTACACGGAGTGAGCCAACCTGGGGG	28	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,cas3,WYL,cas14i,c2c9_V-U4	NA|167aa|up_5|NZ_LR594662.1_4845735_4846236_-,NA	NA|277aa|up_9|NZ_LR594662.1_4842142_4842973_-	COG2998, TupA, tungsten ABC transporter substrate-binding protein [Coenzyme metabolism]	NA|254aa|up_8|NZ_LR594662.1_4842969_4843731_-	cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system	NA|250aa|up_7|NZ_LR594662.1_4843727_4844477_-	COG4662, TupA, ABC-type tungstate transport system, periplasmic component [Coenzyme metabolism]	NA|366aa|up_6|NZ_LR594662.1_4844604_4845702_+	pfam12727, PBP_like, PBP superfamily domain	NA|167aa|up_5|NZ_LR594662.1_4845735_4846236_-	NA	NA|154aa|up_4|NZ_LR594662.1_4846325_4846787_-	pfam14078, DUF4259, Domain of unknown function (DUF4259)	NA|306aa|up_3|NZ_LR594662.1_4846783_4847701_-	pfam01904, DUF72, Protein of unknown function DUF72	NA|249aa|up_2|NZ_LR594662.1_4847825_4848572_-	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]	NA|613aa|up_1|NZ_LR594662.1_4849210_4851049_-	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system	NA|343aa|up_0|NZ_LR594662.1_4851301_4852330_-	cd06582, TM_PBP1_LivH_like, Transmembrane subunit (TM) of Escherichia coli LivH and related proteins	NA|384aa|down_0|NZ_LR594662.1_4852573_4853725_-	cd06333, PBP1_ABC_RPA1789-like, type 1 periplasmic binding-protein component (CouP) of an ABC system (CouPSTU; RPA1789, RPA1791-1793), involved in active transport of lignin-derived aromatic substrates, and its close homologs	NA|362aa|down_1|NZ_LR594662.1_4853759_4854845_-	TIGR02160, 12-phenylacetyl-CoA_epoxidase_subunit_E, phenylacetate-CoA oxygenase/reductase, PaaK subunit	NA|178aa|down_2|NZ_LR594662.1_4854848_4855382_-	TIGR02159, Putative_12-phenylacetyl-CoA_epoxidase_subunit_D, phenylacetate-CoA oxygenase, PaaJ subunit	NA|258aa|down_3|NZ_LR594662.1_4855473_4856247_-	pfam05138, PaaA_PaaC, Phenylacetic acid catabolic protein	NA|108aa|down_4|NZ_LR594662.1_4856256_4856580_-	PRK13781, paaB, phenylacetate-CoA oxygenase subunit PaaB; Provisional	NA|337aa|down_5|NZ_LR594662.1_4856630_4857641_-	PRK13778, paaA, phenylacetate-CoA oxygenase subunit PaaA; Provisional	NA|440aa|down_6|NZ_LR594662.1_4857663_4858983_-	TIGR02155, Phenylacetate-coenzyme_A_ligase, phenylacetate-CoA ligase	NA|146aa|down_7|NZ_LR594662.1_4859016_4859454_-	TIGR02286, Acyl-coenzyme_A_thioesterase_PaaI, phenylacetic acid degradation protein PaaD	NA|268aa|down_8|NZ_LR594662.1_4859468_4860272_-	PRK08140, PRK08140, enoyl-CoA hydratase; Provisional	NA|201aa|down_9|NZ_LR594662.1_4860447_4861050_+	TIGR02287, Phenylacetic_acid_degradation_protein_PaaY, phenylacetic acid degradation protein PaaY
GCF_901827175.1_ASM90182717v1	NZ_LR594662	Variovorax sp. RA8 chromosome 1	7	6182150-6182297	7	CRISPRCasFinder	no		csa3,DEDDh,DinG,cas3,WYL	Orphan	CACCGCGGAACCGGCTTTGCCGGGCCGCCGGTGTTGCCCCCGGTAGGGGGTG	52	1	3	6182202-6182245|6182202-6182245|6182202-6182245	NZ_LR594662.1_883413-883370|NZ_LR594662.1_3932344-3932387|NZ_LR594662.1_4671400-4671443	NA	1	1	Orphan	csa3,DEDDh,DinG,cas3,WYL,cas14i,c2c9_V-U4	NA|155aa|up_8|NZ_LR594662.1_6174618_6175083_-,NA|103aa|up_5|NZ_LR594662.1_6176744_6177053_+,NA|172aa|down_9|NZ_LR594662.1_6196789_6197305_-	NA|118aa|up_9|NZ_LR594662.1_6174243_6174597_-	pfam04020, Phage_holin_4_2, Mycobacterial 4 TMS phage holin, superfamily IV	NA|155aa|up_8|NZ_LR594662.1_6174618_6175083_-	NA	NA|246aa|up_7|NZ_LR594662.1_6175104_6175842_-	TIGR03717, R_switched_YjbE, integral membrane protein, YjbE family	NA|155aa|up_6|NZ_LR594662.1_6176256_6176721_+	pfam12512, DUF3717, Protein of unknown function (DUF3717)	NA|103aa|up_5|NZ_LR594662.1_6176744_6177053_+	NA	NA|187aa|up_4|NZ_LR594662.1_6177053_6177614_-	pfam07152, YaeQ, YaeQ protein	NA|463aa|up_3|NZ_LR594662.1_6177663_6179052_-	PRK09285, PRK09285, adenylosuccinate lyase; Provisional	NA|352aa|up_2|NZ_LR594662.1_6179088_6180144_-	cd07332, M48C_Oma1_like, Peptidase M48C Ste24p, integral membrane endopeptidase	NA|386aa|up_1|NZ_LR594662.1_6180207_6181365_-	pfam05987, DUF898, Bacterial protein of unknown function (DUF898)	NA|204aa|up_0|NZ_LR594662.1_6181472_6182084_+	PRK10357, PRK10357, putative glutathione S-transferase; Provisional	NA|157aa|down_0|NZ_LR594662.1_6182544_6183015_-	cd00340, GSH_Peroxidase, Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate	NA|286aa|down_1|NZ_LR594662.1_6183297_6184155_+	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|314aa|down_2|NZ_LR594662.1_6184210_6185152_+	TIGR02957, putative_sigma_factor, RNA polymerase sigma-70 factor, TIGR02957 family	NA|343aa|down_3|NZ_LR594662.1_6185175_6186204_-	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane]	NA|935aa|down_4|NZ_LR594662.1_6186196_6189001_-	PRK11072, PRK11072, bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase	NA|1374aa|down_5|NZ_LR594662.1_6189026_6193148_+	TIGR02099, probable_transmembrane_protein, TIGR02099 family protein	NA|272aa|down_6|NZ_LR594662.1_6193204_6194020_+	cd07572, nit, Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases)	NA|686aa|down_7|NZ_LR594662.1_6194040_6196098_+	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS	NA|209aa|down_8|NZ_LR594662.1_6196126_6196753_+	COG4566, TtrR, Response regulator [Signal transduction mechanisms]	NA|172aa|down_9|NZ_LR594662.1_6196789_6197305_-	NA
GCF_901827175.1_ASM90182717v1	NZ_LR594664	Variovorax sp. RA8 plasmid 3	1	2397-2497	1	CRISPRCasFinder	no		cas14i,c2c9_V-U4	Orphan	AGCGGTGGGGACCAGGTCGCCAC	23	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,cas3,WYL,cas14i,c2c9_V-U4	NA,NA|78aa|down_0|NZ_LR594664.1_2532_2766_-,NA|479aa|down_1|NZ_LR594664.1_3867_5304_-,NA|628aa|down_4|NZ_LR594664.1_8272_10156_+,NA|105aa|down_8|NZ_LR594664.1_12829_13144_+,NA|250aa|down_9|NZ_LR594664.1_13330_14080_-	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|401aa|up_1|NZ_LR594664.1_117_1320_+	TIGR03453, partition_RepA, plasmid partitioning protein RepA	NA|333aa|up_0|NZ_LR594664.1_1331_2330_+	cd16405, RepB_like_N, plasmid segregation replication protein B like protein, N-terminal domain	NA|78aa|down_0|NZ_LR594664.1_2532_2766_-	NA	NA|479aa|down_1|NZ_LR594664.1_3867_5304_-	NA	NA|187aa|down_2|NZ_LR594664.1_5882_6443_-	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|374aa|down_3|NZ_LR594664.1_6531_7653_-	TIGR03739, PRTRC_D, PRTRC system protein D	NA|628aa|down_4|NZ_LR594664.1_8272_10156_+	NA	NA|113aa|down_5|NZ_LR594664.1_10389_10728_+	pfam16816, DotD, DotD protein	NA|269aa|down_6|NZ_LR594664.1_10742_11549_+	pfam16932, T4SS_TraI, Type IV secretory system, conjugal DNA-protein transfer	NA|426aa|down_7|NZ_LR594664.1_11555_12833_+	TIGR02524, ATP-binding_protein, Dot/Icm secretion system ATPase DotB	NA|105aa|down_8|NZ_LR594664.1_12829_13144_+	NA	NA|250aa|down_9|NZ_LR594664.1_13330_14080_-	NA
GCF_901827175.1_ASM90182717v1	NZ_LR594664	Variovorax sp. RA8 plasmid 3	2	327874-327974	2	CRISPRCasFinder	no	cas14i	cas14i,c2c9_V-U4	Unclear	GCGCCGCGCTCGTCCTGGGCGCC	23	0	0	NA	NA	NA	1	1	TypeV	csa3,DEDDh,DinG,cas3,WYL,cas14i,c2c9_V-U4	NA|101aa|up_7|NZ_LR594664.1_321388_321691_-,NA|243aa|up_6|NZ_LR594664.1_321687_322416_-,NA|118aa|up_2|NZ_LR594664.1_325132_325486_-,NA|98aa|up_0|NZ_LR594664.1_326830_327124_+,NA|173aa|down_0|NZ_LR594664.1_328018_328537_+,NA|87aa|down_1|NZ_LR594664.1_328533_328794_+,NA|200aa|down_2|NZ_LR594664.1_328790_329390_+,NA|172aa|down_4|NZ_LR594664.1_329709_330225_+,NA|285aa|down_6|NZ_LR594664.1_331097_331952_+,NA|124aa|down_7|NZ_LR594664.1_332018_332390_-,NA|258aa|down_9|NZ_LR594664.1_333710_334484_+	NA|50aa|up_9|NZ_LR594664.1_320402_320552_+	pfam09791, Oxidored-like, Oxidoreductase-like protein, N-terminal	NA|270aa|up_8|NZ_LR594664.1_320582_321392_-	COG0820, COG0820, Predicted Fe-S-cluster redox enzyme [General function prediction only]	NA|101aa|up_7|NZ_LR594664.1_321388_321691_-	NA	NA|243aa|up_6|NZ_LR594664.1_321687_322416_-	NA	NA|74aa|up_5|NZ_LR594664.1_322412_322634_-	pfam07866, DUF1653, Protein of unknown function (DUF1653)	NA|229aa|up_4|NZ_LR594664.1_322951_323638_-	pfam12961, DUF3850, Domain of Unknown Function with PDB structure (DUF3850)	NA|494aa|up_3|NZ_LR594664.1_323654_325136_-	PRK00698, tmk, thymidylate kinase; Validated	NA|118aa|up_2|NZ_LR594664.1_325132_325486_-	NA	NA|318aa|up_1|NZ_LR594664.1_325654_326608_+	pfam18299, R2K_2, ATP-grasp domain, R2K clade family 2	NA|98aa|up_0|NZ_LR594664.1_326830_327124_+	NA	NA|173aa|down_0|NZ_LR594664.1_328018_328537_+	NA	NA|87aa|down_1|NZ_LR594664.1_328533_328794_+	NA	NA|200aa|down_2|NZ_LR594664.1_328790_329390_+	NA	NA|94aa|down_3|NZ_LR594664.1_329407_329689_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|172aa|down_4|NZ_LR594664.1_329709_330225_+	NA	NA|274aa|down_5|NZ_LR594664.1_330226_331048_+	cd02587, HAD_5-3dNT, 5'(3')-deoxyribonucleotidase	NA|285aa|down_6|NZ_LR594664.1_331097_331952_+	NA	NA|124aa|down_7|NZ_LR594664.1_332018_332390_-	NA	NA|366aa|down_8|NZ_LR594664.1_332612_333710_+	TIGR02224, Tyrosine_recombinase_XerC, tyrosine recombinase XerC	NA|258aa|down_9|NZ_LR594664.1_333710_334484_+	NA
