assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_902386585.1_UHGG_MGYG-HGUT-02384	NZ_LR698986	Lactobacillus helveticus isolate MGYG-HGUT-02384 chromosome 1	1	739692-739903	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no		DEDDh,cas14j,Cas14u_CAS-V,DinG,cas14k,cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6,csa3	Orphan	GGATCACCTCCACATACGTGGAGAATAC,GGATCACCTCCACATACGTGGAGAATAC,GGATCACCTCCACATACGTGGAGAATAC	28,28,28	0	0	NA	NA	I-B,III-A,III-B:I-B,III-A,III-B:I-B,III-A,III-B	3,3,2	3	Orphan	DEDDh,cas14j,Cas14u_CAS-V,DinG,cas14k,cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6,csa3	NA|65aa|up_8|NZ_LR698986.1_730592_730787_+,NA|99aa|up_4|NZ_LR698986.1_736940_737237_-,NA|98aa|up_3|NZ_LR698986.1_737384_737678_-,NA|180aa|down_0|NZ_LR698986.1_740018_740558_-,NA|121aa|down_1|NZ_LR698986.1_740569_740932_-,NA|140aa|down_3|NZ_LR698986.1_744805_745225_+,NA|169aa|down_5|NZ_LR698986.1_748357_748864_+,NA|87aa|down_6|NZ_LR698986.1_749737_749998_-,NA|262aa|down_7|NZ_LR698986.1_750114_750900_-	NA|208aa|up_9|NZ_LR698986.1_728195_728819_+	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated	NA|65aa|up_8|NZ_LR698986.1_730592_730787_+	NA	NA|128aa|up_7|NZ_LR698986.1_731342_731726_+	COG4603, COG4603, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|874aa|up_6|NZ_LR698986.1_732892_735514_+	cd02089, P-type_ATPase_Ca_prok, prokaryotic P-type Ca(2+)-ATPase similar to Synechococcus elongatus sp	NA|412aa|up_5|NZ_LR698986.1_735570_736806_-	cd17355, MFS_YcxA_like, MFS-type transporter YcxA and similar proteins of the Major Facilitator Superfamily of transporters	NA|99aa|up_4|NZ_LR698986.1_736940_737237_-	NA	NA|98aa|up_3|NZ_LR698986.1_737384_737678_-	NA	NA|221aa|up_2|NZ_LR698986.1_737779_738442_+	TIGR00719, Probable_L-serine_dehydratase_beta_chain, L-serine dehydratase, iron-sulfur-dependent, beta subunit	NA|294aa|up_1|NZ_LR698986.1_738456_739338_+	TIGR00718, Probable_L-serine_dehydratase_alpha_chain, L-serine dehydratase, iron-sulfur-dependent, alpha subunit	NA|109aa|up_0|NZ_LR698986.1_739342_739669_+	COG2151, PaaD, Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]	NA|180aa|down_0|NZ_LR698986.1_740018_740558_-	NA	NA|121aa|down_1|NZ_LR698986.1_740569_740932_-	NA	NA|323aa|down_2|NZ_LR698986.1_742462_743431_+	COG4990, COG4990, Uncharacterized protein conserved in bacteria [Function unknown]	NA|140aa|down_3|NZ_LR698986.1_744805_745225_+	NA	NA|484aa|down_4|NZ_LR698986.1_746724_748176_-	pfam13240, zinc_ribbon_2, zinc-ribbon domain	NA|169aa|down_5|NZ_LR698986.1_748357_748864_+	NA	NA|87aa|down_6|NZ_LR698986.1_749737_749998_-	NA	NA|262aa|down_7|NZ_LR698986.1_750114_750900_-	NA	NA|235aa|down_8|NZ_LR698986.1_750963_751668_-	cd19071, AKR_AKR1-5-like, AKR1/2/3/4/5 family of aldo-keto reductase (AKR) and similar proteins	NA|136aa|down_9|NZ_LR698986.1_751687_752095_-	pfam02566, OsmC, OsmC-like protein
GCF_902386585.1_UHGG_MGYG-HGUT-02384	NZ_LR698986	Lactobacillus helveticus isolate MGYG-HGUT-02384 chromosome 1	2	741040-741128	2	CRISPRCasFinder	no		DEDDh,cas14j,Cas14u_CAS-V,DinG,cas14k,cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6,csa3	Orphan	GGATCACCTCCACATACGTGGAGAATAC	28	0	0	NA	NA	I-B,III-A,III-B	1	1	Orphan	DEDDh,cas14j,Cas14u_CAS-V,DinG,cas14k,cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6,csa3	NA|99aa|up_6|NZ_LR698986.1_736940_737237_-,NA|98aa|up_5|NZ_LR698986.1_737384_737678_-,NA|180aa|up_1|NZ_LR698986.1_740018_740558_-,NA|121aa|up_0|NZ_LR698986.1_740569_740932_-,NA|140aa|down_1|NZ_LR698986.1_744805_745225_+,NA|169aa|down_3|NZ_LR698986.1_748357_748864_+,NA|87aa|down_4|NZ_LR698986.1_749737_749998_-,NA|262aa|down_5|NZ_LR698986.1_750114_750900_-	NA|128aa|up_9|NZ_LR698986.1_731342_731726_+	COG4603, COG4603, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|874aa|up_8|NZ_LR698986.1_732892_735514_+	cd02089, P-type_ATPase_Ca_prok, prokaryotic P-type Ca(2+)-ATPase similar to Synechococcus elongatus sp	NA|412aa|up_7|NZ_LR698986.1_735570_736806_-	cd17355, MFS_YcxA_like, MFS-type transporter YcxA and similar proteins of the Major Facilitator Superfamily of transporters	NA|99aa|up_6|NZ_LR698986.1_736940_737237_-	NA	NA|98aa|up_5|NZ_LR698986.1_737384_737678_-	NA	NA|221aa|up_4|NZ_LR698986.1_737779_738442_+	TIGR00719, Probable_L-serine_dehydratase_beta_chain, L-serine dehydratase, iron-sulfur-dependent, beta subunit	NA|294aa|up_3|NZ_LR698986.1_738456_739338_+	TIGR00718, Probable_L-serine_dehydratase_alpha_chain, L-serine dehydratase, iron-sulfur-dependent, alpha subunit	NA|109aa|up_2|NZ_LR698986.1_739342_739669_+	COG2151, PaaD, Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]	NA|180aa|up_1|NZ_LR698986.1_740018_740558_-	NA	NA|121aa|up_0|NZ_LR698986.1_740569_740932_-	NA	NA|323aa|down_0|NZ_LR698986.1_742462_743431_+	COG4990, COG4990, Uncharacterized protein conserved in bacteria [Function unknown]	NA|140aa|down_1|NZ_LR698986.1_744805_745225_+	NA	NA|484aa|down_2|NZ_LR698986.1_746724_748176_-	pfam13240, zinc_ribbon_2, zinc-ribbon domain	NA|169aa|down_3|NZ_LR698986.1_748357_748864_+	NA	NA|87aa|down_4|NZ_LR698986.1_749737_749998_-	NA	NA|262aa|down_5|NZ_LR698986.1_750114_750900_-	NA	NA|235aa|down_6|NZ_LR698986.1_750963_751668_-	cd19071, AKR_AKR1-5-like, AKR1/2/3/4/5 family of aldo-keto reductase (AKR) and similar proteins	NA|136aa|down_7|NZ_LR698986.1_751687_752095_-	pfam02566, OsmC, OsmC-like protein	NA|391aa|down_8|NZ_LR698986.1_752113_753286_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|276aa|down_9|NZ_LR698986.1_755159_755987_-	pfam13612, DDE_Tnp_1_3, Transposase DDE domain
GCF_902386585.1_UHGG_MGYG-HGUT-02384	NZ_LR698986	Lactobacillus helveticus isolate MGYG-HGUT-02384 chromosome 1	3	869436-870060	3,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6	DEDDh,cas14j,Cas14u_CAS-V,DinG,cas14k,cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6,csa3	Unclear	CTTTACATTTCTCTTAAGTTAAATAAAAAC,CTTTACATTTCTCTTAAGTTAAATAAAAAC,CTTTACATTTCTCTTAAGTTAAATAAAAAC	30,30,30	2	2	869731-869766|869732-869767	NZ_LR698986.1_363485-363520|NZ_LR698986.1_363485-363520	NA:NA:NA	9,8,7	9	Unclear	DEDDh,cas14j,Cas14u_CAS-V,DinG,cas14k,cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6,csa3	NA|177aa|up_7|NZ_LR698986.1_858846_859377_-,NA	NA|417aa|up_9|NZ_LR698986.1_856218_857469_-	pfam04087, DUF389, Domain of unknown function (DUF389)	NA|106aa|up_8|NZ_LR698986.1_857475_857793_-	COG3603, COG3603, Uncharacterized conserved protein [Function unknown]	NA|177aa|up_7|NZ_LR698986.1_858846_859377_-	NA	NA|645aa|up_6|NZ_LR698986.1_860209_862144_-	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed	NA|303aa|up_5|NZ_LR698986.1_862434_863343_-	PRK08939, PRK08939, primosomal protein DnaI; Reviewed	NA|444aa|up_4|NZ_LR698986.1_863375_864707_-	COG3611, DnaB, Replication initiation/membrane attachment protein [DNA replication, recombination, and repair]	NA|156aa|up_3|NZ_LR698986.1_864709_865177_-	PRK00464, nrdR, transcriptional repressor NrdR	NA|201aa|up_2|NZ_LR698986.1_865179_865782_-	PRK00081, coaE, dephospho-CoA kinase; Reviewed	NA|277aa|up_1|NZ_LR698986.1_865778_866609_-	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA|888aa|up_0|NZ_LR698986.1_866617_869281_-	PRK05755, PRK05755, DNA polymerase I; Provisional	cas2|94aa|down_0|NZ_LR698986.1_872468_872750_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|330aa|down_1|NZ_LR698986.1_872755_873745_-	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1	cas4|164aa|down_2|NZ_LR698986.1_873754_874246_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas3|810aa|down_3|NZ_LR698986.1_874261_876691_-	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas5|238aa|down_4|NZ_LR698986.1_876833_877547_-	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas7|301aa|down_5|NZ_LR698986.1_877533_878436_-	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas8b2|580aa|down_6|NZ_LR698986.1_878454_880194_-	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas6|252aa|down_7|NZ_LR698986.1_880229_880985_-	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	NA|218aa|down_8|NZ_LR698986.1_883474_884128_-	PRK07116, PRK07116, flavodoxin; Provisional	NA|294aa|down_9|NZ_LR698986.1_884272_885154_-	pfam01145, Band_7, SPFH domain / Band 7 family
GCF_902386585.1_UHGG_MGYG-HGUT-02384	NZ_LR698986	Lactobacillus helveticus isolate MGYG-HGUT-02384 chromosome 1	4	870872-872284	3,3,4	CRT,PILER-CR,CRISPRCasFinder	no	cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6	DEDDh,cas14j,Cas14u_CAS-V,DinG,cas14k,cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6,csa3	Unclear	CTTTACATTTCTCTTAAGTTAAATAAAAAC,CTTTACATTTCTCTTAAGTTAAATAAAAAC,CTTTACATTTCTCTTAAGTTAAATAAAAAC	30,30,30	2	2	872155-872189|872220-872254	NZ_LR698986.1_1041141-1041175|NZ_LR698986.1_1041141-1041175	NA:NA:NA	21,19,20	21	Unclear	DEDDh,cas14j,Cas14u_CAS-V,DinG,cas14k,cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6,csa3	NA|177aa|up_7|NZ_LR698986.1_858846_859377_-,NA	NA|417aa|up_9|NZ_LR698986.1_856218_857469_-	pfam04087, DUF389, Domain of unknown function (DUF389)	NA|106aa|up_8|NZ_LR698986.1_857475_857793_-	COG3603, COG3603, Uncharacterized conserved protein [Function unknown]	NA|177aa|up_7|NZ_LR698986.1_858846_859377_-	NA	NA|645aa|up_6|NZ_LR698986.1_860209_862144_-	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed	NA|303aa|up_5|NZ_LR698986.1_862434_863343_-	PRK08939, PRK08939, primosomal protein DnaI; Reviewed	NA|444aa|up_4|NZ_LR698986.1_863375_864707_-	COG3611, DnaB, Replication initiation/membrane attachment protein [DNA replication, recombination, and repair]	NA|156aa|up_3|NZ_LR698986.1_864709_865177_-	PRK00464, nrdR, transcriptional repressor NrdR	NA|201aa|up_2|NZ_LR698986.1_865179_865782_-	PRK00081, coaE, dephospho-CoA kinase; Reviewed	NA|277aa|up_1|NZ_LR698986.1_865778_866609_-	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA|888aa|up_0|NZ_LR698986.1_866617_869281_-	PRK05755, PRK05755, DNA polymerase I; Provisional	cas2|94aa|down_0|NZ_LR698986.1_872468_872750_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|330aa|down_1|NZ_LR698986.1_872755_873745_-	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1	cas4|164aa|down_2|NZ_LR698986.1_873754_874246_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas3|810aa|down_3|NZ_LR698986.1_874261_876691_-	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas5|238aa|down_4|NZ_LR698986.1_876833_877547_-	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas7|301aa|down_5|NZ_LR698986.1_877533_878436_-	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas8b2|580aa|down_6|NZ_LR698986.1_878454_880194_-	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas6|252aa|down_7|NZ_LR698986.1_880229_880985_-	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	NA|218aa|down_8|NZ_LR698986.1_883474_884128_-	PRK07116, PRK07116, flavodoxin; Provisional	NA|294aa|down_9|NZ_LR698986.1_884272_885154_-	pfam01145, Band_7, SPFH domain / Band 7 family
GCF_902386585.1_UHGG_MGYG-HGUT-02384	NZ_LR698986	Lactobacillus helveticus isolate MGYG-HGUT-02384 chromosome 1	5	1892529-1892711	4	PILER-CR	no	cas14k	DEDDh,cas14j,Cas14u_CAS-V,DinG,cas14k,cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6,csa3	Unclear	CACGCGTGGGTTCAAATCCCACAT	24	0	0	NA	NA	NA	2	2	TypeV	DEDDh,cas14j,Cas14u_CAS-V,DinG,cas14k,cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6,csa3	NA|130aa|up_3|NZ_LR698986.1_1887808_1888198_+,NA|79aa|down_0|NZ_LR698986.1_1896621_1896858_-	NA|459aa|up_9|NZ_LR698986.1_1877735_1879112_-	TIGR00931, Uncharacterized_Na+/H+_antiporter_HI_1107, Na+/H+ antiporter NhaC	NA|451aa|up_8|NZ_LR698986.1_1879476_1880829_+	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|321aa|up_7|NZ_LR698986.1_1882315_1883278_-	PRK06522, PRK06522, 2-dehydropantoate 2-reductase; Reviewed	NA|393aa|up_6|NZ_LR698986.1_1883296_1884475_-	PRK08068, PRK08068, transaminase; Reviewed	NA|262aa|up_5|NZ_LR698986.1_1884495_1885281_-	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|67aa|up_4|NZ_LR698986.1_1887345_1887546_-	COG1278, CspC, Cold shock proteins [Transcription]	NA|130aa|up_3|NZ_LR698986.1_1887808_1888198_+	NA	NA|167aa|up_2|NZ_LR698986.1_1889563_1890064_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|203aa|up_1|NZ_LR698986.1_1890166_1890775_+	cd03769, SR_IS607_transposase_like, Serine Recombinase (SR) family, IS607-like transposase subfamily, catalytic domain; members contain a DNA binding domain with homology to MerR/SoxR located N-terminal to the catalytic domain	cas14k|442aa|up_0|NZ_LR698986.1_1890804_1892130_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|79aa|down_0|NZ_LR698986.1_1896621_1896858_-	NA	NA|179aa|down_1|NZ_LR698986.1_1897023_1897560_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|426aa|down_2|NZ_LR698986.1_1897748_1899026_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|393aa|down_3|NZ_LR698986.1_1901064_1902243_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|160aa|down_4|NZ_LR698986.1_1902312_1902792_+	pfam17312, Helveticin_J, Bacteriocin helveticin-J	NA|359aa|down_5|NZ_LR698986.1_1902885_1903962_+	pfam03217, SLAP, SLAP domain	NA|393aa|down_6|NZ_LR698986.1_1904200_1905379_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|443aa|down_7|NZ_LR698986.1_1907785_1909114_-	PRK10720, PRK10720, uracil transporter; Provisional	NA|177aa|down_8|NZ_LR698986.1_1909126_1909657_-	PRK05205, PRK05205, bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR	NA|490aa|down_9|NZ_LR698986.1_1909942_1911412_+	cd17502, MFS_Azr1_MDR_like, Saccharomyces cerevisiae Azole resistance protein 1 (Azr1p), and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily
